data_7ABR # _model_server_result.job_id ckPgsezZ6VgJecwDbvHkXg _model_server_result.datetime_utc '2025-04-22 00:51:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7abr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1003}' # _entry.id 7ABR # _exptl.entry_id 7ABR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ABR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ABR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH2 ARG 333 A ARG 333 1_555 J O2G ATP . A ATP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale2 A CG PRO 388 A PRO 388 1_555 H C8 ADP . A ADP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale3 C C GLY 211 C GLY 211 1_555 L O2B ATP . C ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale4 D N GLY 213 D GLY 213 1_555 N O1B ATP . D ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale5 D NH1 ARG 704 D ARG 704 1_555 P O2G ATP . D ATP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ABR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ADP A 1 1001 1001 ADP ADP . I 3 ADP A 1 1002 1002 ADP ADP . J 4 ATP A 1 1003 1001 ATP ATP . K 3 ADP B 1 901 1002 ADP ADP . L 4 ATP C 1 1001 1001 ATP ATP . M 4 ATP C 1 1002 1002 ATP ATP . N 4 ATP D 1 1001 1001 ATP ATP . O 4 ATP D 1 1002 1002 ATP ATP . P 4 ATP D 1 1003 1002 ATP ATP . Q 4 ATP E 1 1001 1001 ATP ATP . R 3 ADP F 1 1001 1001 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 4 137.654 146.853 139.341 1 37.52 ? PG ATP 1003 A 1 HETATM 2 O O1G ATP . . . J 4 136.724 146.314 140.389 1 37.52 ? O1G ATP 1003 A 1 HETATM 3 O O2G ATP . . . J 4 137.514 148.319 139.015 1 37.52 ? O2G ATP 1003 A 1 HETATM 4 O O3G ATP . . . J 4 139.051 146.363 139.54 1 37.52 ? O3G ATP 1003 A 1 HETATM 5 P PB ATP . . . J 4 136.575 144.632 138.221 1 37.52 ? PB ATP 1003 A 1 HETATM 6 O O1B ATP . . . J 4 135.294 144.805 138.97 1 37.52 ? O1B ATP 1003 A 1 HETATM 7 O O2B ATP . . . J 4 137.672 143.796 138.791 1 37.52 ? O2B ATP 1003 A 1 HETATM 8 O O3B ATP . . . J 4 137.241 146.061 138.021 1 37.52 ? O3B ATP 1003 A 1 HETATM 9 P PA ATP . . . J 4 134.971 144.939 136.076 1 37.52 ? PA ATP 1003 A 1 HETATM 10 O O1A ATP . . . J 4 133.731 144.73 136.882 1 37.52 ? O1A ATP 1003 A 1 HETATM 11 O O2A ATP . . . J 4 135.414 146.344 135.807 1 37.52 ? O2A ATP 1003 A 1 HETATM 12 O O3A ATP . . . J 4 136.193 144.162 136.743 1 37.52 ? O3A ATP 1003 A 1 HETATM 13 O O5' ATP . . . J 4 134.745 144.263 134.66 1 37.52 ? O5' ATP 1003 A 1 HETATM 14 C C5' ATP . . . J 4 135.46 144.852 133.597 1 37.52 ? C5' ATP 1003 A 1 HETATM 15 C C4' ATP . . . J 4 134.583 144.93 132.37 1 37.52 ? C4' ATP 1003 A 1 HETATM 16 O O4' ATP . . . J 4 134.82 143.794 131.558 1 37.52 ? O4' ATP 1003 A 1 HETATM 17 C C3' ATP . . . J 4 133.132 144.916 132.75 1 37.52 ? C3' ATP 1003 A 1 HETATM 18 O O3' ATP . . . J 4 132.508 145.964 132.025 1 37.52 ? O3' ATP 1003 A 1 HETATM 19 C C2' ATP . . . J 4 132.596 143.608 132.237 1 37.52 ? C2' ATP 1003 A 1 HETATM 20 O O2' ATP . . . J 4 131.35 143.796 131.573 1 37.52 ? O2' ATP 1003 A 1 HETATM 21 C C1' ATP . . . J 4 133.607 143.142 131.232 1 37.52 ? C1' ATP 1003 A 1 HETATM 22 N N9 ATP . . . J 4 133.841 141.717 131.457 1 37.52 ? N9 ATP 1003 A 1 HETATM 23 C C8 ATP . . . J 4 134.834 141.243 132.209 1 37.52 ? C8 ATP 1003 A 1 HETATM 24 N N7 ATP . . . J 4 134.819 139.895 132.246 1 37.52 ? N7 ATP 1003 A 1 HETATM 25 C C5 ATP . . . J 4 133.795 139.498 131.494 1 37.52 ? C5 ATP 1003 A 1 HETATM 26 C C6 ATP . . . J 4 133.232 138.203 131.124 1 37.52 ? C6 ATP 1003 A 1 HETATM 27 N N6 ATP . . . J 4 133.79 137.062 131.571 1 37.52 ? N6 ATP 1003 A 1 HETATM 28 N N1 ATP . . . J 4 132.155 138.209 130.325 1 37.52 ? N1 ATP 1003 A 1 HETATM 29 C C2 ATP . . . J 4 131.617 139.357 129.887 1 37.52 ? C2 ATP 1003 A 1 HETATM 30 N N3 ATP . . . J 4 132.077 140.573 130.191 1 37.52 ? N3 ATP 1003 A 1 HETATM 31 C C4 ATP . . . J 4 133.148 140.7 130.982 1 37.52 ? C4 ATP 1003 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #