data_7ABR # _model_server_result.job_id gPCv3PthfyQIGklT7e_lmg _model_server_result.datetime_utc '2025-04-21 14:52:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7abr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1003}' # _entry.id 7ABR # _exptl.entry_id 7ABR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ABR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ABR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH2 ARG 333 A ARG 333 1_555 J O2G ATP . A ATP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale2 A CG PRO 388 A PRO 388 1_555 H C8 ADP . A ADP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale3 C C GLY 211 C GLY 211 1_555 L O2B ATP . C ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale4 D N GLY 213 D GLY 213 1_555 N O1B ATP . D ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale5 D NH1 ARG 704 D ARG 704 1_555 P O2G ATP . D ATP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ABR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ADP A 1 1001 1001 ADP ADP . I 3 ADP A 1 1002 1002 ADP ADP . J 4 ATP A 1 1003 1001 ATP ATP . K 3 ADP B 1 901 1002 ADP ADP . L 4 ATP C 1 1001 1001 ATP ATP . M 4 ATP C 1 1002 1002 ATP ATP . N 4 ATP D 1 1001 1001 ATP ATP . O 4 ATP D 1 1002 1002 ATP ATP . P 4 ATP D 1 1003 1002 ATP ATP . Q 4 ATP E 1 1001 1001 ATP ATP . R 3 ADP F 1 1001 1001 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . P 4 185.606 144.526 174.067 1 44.53 ? PG ATP 1003 D 1 HETATM 2 O O1G ATP . . . P 4 186.908 145.041 173.532 1 44.53 ? O1G ATP 1003 D 1 HETATM 3 O O2G ATP . . . P 4 184.925 143.403 173.3 1 44.53 ? O2G ATP 1003 D 1 HETATM 4 O O3G ATP . . . P 4 184.754 145.646 174.59 1 44.53 ? O3G ATP 1003 D 1 HETATM 5 P PB ATP . . . P 4 186.231 144.684 176.713 1 44.53 ? PB ATP 1003 D 1 HETATM 6 O O1B ATP . . . P 4 184.875 145.139 177.121 1 44.53 ? O1B ATP 1003 D 1 HETATM 7 O O2B ATP . . . P 4 187.338 145.66 176.523 1 44.53 ? O2B ATP 1003 D 1 HETATM 8 O O3B ATP . . . P 4 186.088 143.817 175.398 1 44.53 ? O3B ATP 1003 D 1 HETATM 9 P PA ATP . . . P 4 185.705 143.249 178.896 1 44.53 ? PA ATP 1003 D 1 HETATM 10 O O1A ATP . . . P 4 184.379 142.902 178.311 1 44.53 ? O1A ATP 1003 D 1 HETATM 11 O O2A ATP . . . P 4 185.793 144.365 179.885 1 44.53 ? O2A ATP 1003 D 1 HETATM 12 O O3A ATP . . . P 4 186.712 143.568 177.726 1 44.53 ? O3A ATP 1003 D 1 HETATM 13 O O5' ATP . . . P 4 186.249 141.881 179.491 1 44.53 ? O5' ATP 1003 D 1 HETATM 14 C C5' ATP . . . P 4 185.274 140.95 179.919 1 44.53 ? C5' ATP 1003 D 1 HETATM 15 C C4' ATP . . . P 4 185.983 139.659 180.246 1 44.53 ? C4' ATP 1003 D 1 HETATM 16 O O4' ATP . . . P 4 187.366 139.95 180.267 1 44.53 ? O4' ATP 1003 D 1 HETATM 17 C C3' ATP . . . P 4 185.615 139.171 181.622 1 44.53 ? C3' ATP 1003 D 1 HETATM 18 O O3' ATP . . . P 4 185.704 137.755 181.6 1 44.53 ? O3' ATP 1003 D 1 HETATM 19 C C2' ATP . . . P 4 186.732 139.659 182.49 1 44.53 ? C2' ATP 1003 D 1 HETATM 20 O O2' ATP . . . P 4 186.982 138.753 183.559 1 44.53 ? O2' ATP 1003 D 1 HETATM 21 C C1' ATP . . . P 4 187.893 139.635 181.54 1 44.53 ? C1' ATP 1003 D 1 HETATM 22 N N9 ATP . . . P 4 188.869 140.669 181.899 1 44.53 ? N9 ATP 1003 D 1 HETATM 23 C C8 ATP . . . P 4 189.384 141.563 181.048 1 44.53 ? C8 ATP 1003 D 1 HETATM 24 N N7 ATP . . . P 4 190.273 142.356 181.68 1 44.53 ? N7 ATP 1003 D 1 HETATM 25 C C5 ATP . . . P 4 190.323 141.969 182.953 1 44.53 ? C5 ATP 1003 D 1 HETATM 26 C C6 ATP . . . P 4 191.058 142.394 184.14 1 44.53 ? C6 ATP 1003 D 1 HETATM 27 N N6 ATP . . . P 4 191.924 143.422 184.072 1 44.53 ? N6 ATP 1003 D 1 HETATM 28 N N1 ATP . . . P 4 190.828 141.729 185.283 1 44.53 ? N1 ATP 1003 D 1 HETATM 29 C C2 ATP . . . P 4 189.961 140.708 185.348 1 44.53 ? C2 ATP 1003 D 1 HETATM 30 N N3 ATP . . . P 4 189.26 140.267 184.304 1 44.53 ? N3 ATP 1003 D 1 HETATM 31 C C4 ATP . . . P 4 189.399 140.851 183.1 1 44.53 ? C4 ATP 1003 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #