data_7AC5 # _model_server_result.job_id m2S_GDMnmE2gfYI8vlmpEw _model_server_result.datetime_utc '2025-06-27 17:01:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ac5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 7AC5 # _exptl.entry_id 7AC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.78 _cell.angle_gamma 90 _cell.entry_id 7AC5 _cell.length_a 73.32 _cell.length_b 92.03 _cell.length_c 83.54 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc3 E MG MG . A MG 502 1_555 H O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 E MG MG . A MG 502 1_555 H O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc5 E MG MG . A MG 502 1_555 H O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc6 E MG MG . A MG 502 1_555 H O HOH . A HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 7AC5 _atom_sites.fract_transf_matrix[1][1] 0.013639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001623 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 GDP B 1 501 491 GDP GDP . G 7 PG0 B 1 502 501 PG0 1PE . H 8 HOH A 1 601 147 HOH HOH . H 8 HOH A 2 602 30 HOH HOH . H 8 HOH A 3 603 149 HOH HOH . H 8 HOH A 4 604 21 HOH HOH . H 8 HOH A 5 605 22 HOH HOH . H 8 HOH A 6 606 61 HOH HOH . H 8 HOH A 7 607 7 HOH HOH . H 8 HOH A 8 608 66 HOH HOH . H 8 HOH A 9 609 144 HOH HOH . H 8 HOH A 10 610 121 HOH HOH . H 8 HOH A 11 611 78 HOH HOH . H 8 HOH A 12 612 88 HOH HOH . H 8 HOH A 13 613 13 HOH HOH . H 8 HOH A 14 614 126 HOH HOH . H 8 HOH A 15 615 93 HOH HOH . H 8 HOH A 16 616 133 HOH HOH . H 8 HOH A 17 617 11 HOH HOH . H 8 HOH A 18 618 111 HOH HOH . H 8 HOH A 19 619 41 HOH HOH . H 8 HOH A 20 620 108 HOH HOH . H 8 HOH A 21 621 129 HOH HOH . H 8 HOH A 22 622 119 HOH HOH . H 8 HOH A 23 623 15 HOH HOH . H 8 HOH A 24 624 68 HOH HOH . H 8 HOH A 25 625 100 HOH HOH . H 8 HOH A 26 626 62 HOH HOH . H 8 HOH A 27 627 4 HOH HOH . H 8 HOH A 28 628 110 HOH HOH . H 8 HOH A 29 629 40 HOH HOH . H 8 HOH A 30 630 53 HOH HOH . H 8 HOH A 31 631 1 HOH HOH . H 8 HOH A 32 632 45 HOH HOH . H 8 HOH A 33 633 135 HOH HOH . H 8 HOH A 34 634 34 HOH HOH . H 8 HOH A 35 635 31 HOH HOH . H 8 HOH A 36 636 124 HOH HOH . H 8 HOH A 37 637 20 HOH HOH . H 8 HOH A 38 638 113 HOH HOH . H 8 HOH A 39 639 81 HOH HOH . H 8 HOH A 40 640 55 HOH HOH . H 8 HOH A 41 641 58 HOH HOH . H 8 HOH A 42 642 115 HOH HOH . H 8 HOH A 43 643 122 HOH HOH . H 8 HOH A 44 644 123 HOH HOH . H 8 HOH A 45 645 83 HOH HOH . H 8 HOH A 46 646 2 HOH HOH . H 8 HOH A 47 647 116 HOH HOH . H 8 HOH A 48 648 70 HOH HOH . H 8 HOH A 49 649 118 HOH HOH . H 8 HOH A 50 650 82 HOH HOH . H 8 HOH A 51 651 17 HOH HOH . H 8 HOH A 52 652 142 HOH HOH . H 8 HOH A 53 653 137 HOH HOH . H 8 HOH A 54 654 134 HOH HOH . H 8 HOH A 55 655 89 HOH HOH . H 8 HOH A 56 656 107 HOH HOH . H 8 HOH A 57 657 44 HOH HOH . H 8 HOH A 58 658 74 HOH HOH . H 8 HOH A 59 659 95 HOH HOH . H 8 HOH A 60 660 80 HOH HOH . H 8 HOH A 61 661 67 HOH HOH . H 8 HOH A 62 662 109 HOH HOH . H 8 HOH A 63 663 72 HOH HOH . I 8 HOH B 1 601 50 HOH HOH . I 8 HOH B 2 602 28 HOH HOH . I 8 HOH B 3 603 9 HOH HOH . I 8 HOH B 4 604 71 HOH HOH . I 8 HOH B 5 605 141 HOH HOH . I 8 HOH B 6 606 148 HOH HOH . I 8 HOH B 7 607 52 HOH HOH . I 8 HOH B 8 608 130 HOH HOH . I 8 HOH B 9 609 117 HOH HOH . I 8 HOH B 10 610 59 HOH HOH . I 8 HOH B 11 611 128 HOH HOH . I 8 HOH B 12 612 12 HOH HOH . I 8 HOH B 13 613 125 HOH HOH . I 8 HOH B 14 614 103 HOH HOH . I 8 HOH B 15 615 76 HOH HOH . I 8 HOH B 16 616 140 HOH HOH . I 8 HOH B 17 617 75 HOH HOH . I 8 HOH B 18 618 27 HOH HOH . I 8 HOH B 19 619 57 HOH HOH . I 8 HOH B 20 620 104 HOH HOH . I 8 HOH B 21 621 91 HOH HOH . I 8 HOH B 22 622 96 HOH HOH . I 8 HOH B 23 623 105 HOH HOH . I 8 HOH B 24 624 98 HOH HOH . I 8 HOH B 25 625 14 HOH HOH . I 8 HOH B 26 626 10 HOH HOH . I 8 HOH B 27 627 139 HOH HOH . I 8 HOH B 28 628 86 HOH HOH . I 8 HOH B 29 629 77 HOH HOH . I 8 HOH B 30 630 63 HOH HOH . I 8 HOH B 31 631 97 HOH HOH . I 8 HOH B 32 632 32 HOH HOH . I 8 HOH B 33 633 47 HOH HOH . I 8 HOH B 34 634 143 HOH HOH . I 8 HOH B 35 635 106 HOH HOH . I 8 HOH B 36 636 90 HOH HOH . I 8 HOH B 37 637 79 HOH HOH . I 8 HOH B 38 638 60 HOH HOH . I 8 HOH B 39 639 132 HOH HOH . J 8 HOH F 1 201 18 HOH HOH . J 8 HOH F 2 202 85 HOH HOH . J 8 HOH F 3 203 5 HOH HOH . J 8 HOH F 4 204 112 HOH HOH . J 8 HOH F 5 205 16 HOH HOH . J 8 HOH F 6 206 131 HOH HOH . J 8 HOH F 7 207 127 HOH HOH . J 8 HOH F 8 208 3 HOH HOH . J 8 HOH F 9 209 19 HOH HOH . J 8 HOH F 10 210 56 HOH HOH . J 8 HOH F 11 211 65 HOH HOH . J 8 HOH F 12 212 120 HOH HOH . J 8 HOH F 13 213 92 HOH HOH . J 8 HOH F 14 214 150 HOH HOH . J 8 HOH F 15 215 42 HOH HOH . J 8 HOH F 16 216 43 HOH HOH . J 8 HOH F 17 217 23 HOH HOH . J 8 HOH F 18 218 6 HOH HOH . J 8 HOH F 19 219 35 HOH HOH . J 8 HOH F 20 220 51 HOH HOH . J 8 HOH F 21 221 49 HOH HOH . J 8 HOH F 22 222 24 HOH HOH . J 8 HOH F 23 223 114 HOH HOH . J 8 HOH F 24 224 39 HOH HOH . J 8 HOH F 25 225 33 HOH HOH . J 8 HOH F 26 226 38 HOH HOH . J 8 HOH F 27 227 37 HOH HOH . J 8 HOH F 28 228 99 HOH HOH . J 8 HOH F 29 229 87 HOH HOH . J 8 HOH F 30 230 25 HOH HOH . J 8 HOH F 31 231 54 HOH HOH . J 8 HOH F 32 232 69 HOH HOH . J 8 HOH F 33 233 146 HOH HOH . J 8 HOH F 34 234 73 HOH HOH . J 8 HOH F 35 235 145 HOH HOH . J 8 HOH F 36 236 102 HOH HOH . J 8 HOH F 37 237 26 HOH HOH . J 8 HOH F 38 238 8 HOH HOH . J 8 HOH F 39 239 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 102.826 23.502 23.498 1 36.72 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . D 4 102.873 21.99 23.443 1 32.12 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . D 4 103.39 24.001 24.809 1 42.49 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . D 4 101.401 23.978 23.347 1 40.92 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . D 4 103.708 24.132 22.302 1 47.95 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . D 4 104.15 23.256 21.027 1 39.53 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . D 4 104.994 24.139 20.141 1 35.26 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . D 4 104.9 22.024 21.463 1 33.61 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . D 4 102.778 22.843 20.293 1 66.97 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . D 4 102.725 22.318 18.776 1 95.99 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . D 4 104.041 22.542 18.09 1 95.35 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . D 4 102.346 20.864 18.741 1 68.72 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . D 4 101.596 23.232 18.098 1 97.82 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . D 4 100.492 22.632 17.465 1 52.58 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . D 4 100.474 22.932 15.963 1 33.36 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . D 4 101.593 22.387 15.251 1 25.54 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . D 4 99.261 22.335 15.247 1 27.56 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . D 4 98.898 23.19 14.18 1 27.53 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . D 4 99.733 21.001 14.686 1 32.15 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . D 4 98.984 20.641 13.55 1 40.87 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . D 4 101.195 21.336 14.355 1 33.6 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . D 4 102.193 20.262 14.45 1 40.19 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . D 4 102.554 19.577 15.57 1 37.34 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . D 4 103.501 18.687 15.211 1 39.92 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . D 4 103.761 18.815 13.889 1 38.82 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . D 4 104.64 18.155 13.035 1 38.41 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . D 4 105.369 17.26 13.468 1 38.8 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . D 4 104.685 18.507 11.7 1 35.31 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . D 4 103.864 19.51 11.222 1 40.39 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . D 4 103.909 19.847 9.933 1 42.07 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . D 4 102.995 20.16 12.081 1 41.54 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . D 4 102.947 19.817 13.394 1 37.26 ? C4 GTP 501 A 1 HETATM 33 H H4' GTP . . . D 4 100.479 24.021 15.941 1 40.08 ? H4' GTP 501 A 1 HETATM 34 H H3' GTP . . . D 4 98.402 22.217 15.907 1 33.12 ? H3' GTP 501 A 1 HETATM 35 H HO3' GTP . . . D 4 98.439 23.979 14.536 1 33.08 ? HO3' GTP 501 A 1 HETATM 36 H H2' GTP . . . D 4 99.618 20.143 15.349 1 38.63 ? H2' GTP 501 A 1 HETATM 37 H HO2' GTP . . . D 4 99.352 19.819 13.163 1 49.09 ? HO2' GTP 501 A 1 HETATM 38 H H1' GTP . . . D 4 101.175 21.59 13.295 1 40.37 ? H1' GTP 501 A 1 HETATM 39 H H8 GTP . . . D 4 102.151 19.721 16.572 1 44.86 ? H8 GTP 501 A 1 HETATM 40 H HN21 GTP . . . D 4 103.306 20.582 9.578 1 50.53 ? HN21 GTP 501 A 1 HETATM 41 H HN22 GTP . . . D 4 104.548 19.368 9.305 1 50.53 ? HN22 GTP 501 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 142 _model_server_stats.query_time_ms 477 _model_server_stats.encode_time_ms 47 _model_server_stats.element_count 41 #