data_7AC9 # _model_server_result.job_id SA4DCY-xY0V5TP4X8z1vYA _model_server_result.datetime_utc '2024-11-26 09:42:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ac9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 7AC9 # _exptl.entry_id 7AC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.47 _cell.angle_gamma 90 _cell.entry_id 7AC9 _cell.length_a 70.469 _cell.length_b 71.37 _cell.length_c 72.598 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 J C1 NAG . H NAG 307 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 C C GLU 9 I GLU 525 1_555 C N TYS 10 I TYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 C C TYS 10 I TYS 526 1_555 C N LEU 11 I LEU 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 B O LYS 174 H LYS 169 1_555 E NA NA . H NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 B O THR 177 H THR 172 1_555 E NA NA . H NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 B O PHE 215 H PHE 204 1_555 E NA NA . H NA 302 4_556 A ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc4 B O ARG 233 H ARG 221 1_555 D NA NA . H NA 301 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 B O LYS 236 H LYS 224 1_555 D NA NA . H NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 D NA NA . H NA 301 1_555 L O HOH . H HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc7 D NA NA . H NA 301 1_555 L O HOH . H HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc8 D NA NA . H NA 301 1_555 L O HOH . H HOH 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc9 D NA NA . H NA 301 1_555 L O HOH . H HOH 569 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc10 E NA NA . H NA 302 1_555 L O HOH . H HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc11 E NA NA . H NA 302 1_555 L O HOH . H HOH 515 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc12 E NA NA . H NA 302 1_555 L O HOH . H HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 109 n n S C1 DMS sing 110 n n S C2 DMS sing 111 n n C1 H11 DMS sing 112 n n C1 H12 DMS sing 113 n n C1 H13 DMS sing 114 n n C2 H21 DMS sing 115 n n C2 H22 DMS sing 116 n n C2 H23 DMS sing 117 n n # _atom_sites.entry_id 7AC9 _atom_sites.fract_transf_matrix[1][1] 0.014191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002621 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA H 1 301 1 NA NA . E 4 NA H 1 302 2 NA NA . F 5 DMS H 1 303 3 DMS DMS . G 5 DMS H 1 304 4 DMS DMS . H 6 PO4 H 1 305 5 PO4 PO4 . I 7 DAR H 1 306 6 DAR J77 . J 8 NAG H 1 307 7 NAG NAG . K 9 HOH L 1 101 153 HOH HOH . K 9 HOH L 2 102 131 HOH HOH . K 9 HOH L 3 103 50 HOH HOH . K 9 HOH L 4 104 189 HOH HOH . K 9 HOH L 5 105 51 HOH HOH . K 9 HOH L 6 106 142 HOH HOH . K 9 HOH L 7 107 37 HOH HOH . K 9 HOH L 8 108 45 HOH HOH . K 9 HOH L 9 109 44 HOH HOH . K 9 HOH L 10 110 26 HOH HOH . K 9 HOH L 11 111 6 HOH HOH . K 9 HOH L 12 112 48 HOH HOH . K 9 HOH L 13 113 77 HOH HOH . K 9 HOH L 14 114 69 HOH HOH . K 9 HOH L 15 115 108 HOH HOH . K 9 HOH L 16 116 13 HOH HOH . K 9 HOH L 17 117 277 HOH HOH . K 9 HOH L 18 118 73 HOH HOH . K 9 HOH L 19 119 223 HOH HOH . K 9 HOH L 20 120 174 HOH HOH . K 9 HOH L 21 121 198 HOH HOH . K 9 HOH L 22 122 184 HOH HOH . K 9 HOH L 23 123 91 HOH HOH . K 9 HOH L 24 124 144 HOH HOH . K 9 HOH L 25 125 270 HOH HOH . K 9 HOH L 26 126 167 HOH HOH . K 9 HOH L 27 127 134 HOH HOH . K 9 HOH L 28 128 243 HOH HOH . K 9 HOH L 29 129 83 HOH HOH . K 9 HOH L 30 130 121 HOH HOH . K 9 HOH L 31 131 249 HOH HOH . K 9 HOH L 32 132 135 HOH HOH . K 9 HOH L 33 133 269 HOH HOH . K 9 HOH L 34 134 146 HOH HOH . L 9 HOH H 1 401 195 HOH HOH . L 9 HOH H 2 402 196 HOH HOH . L 9 HOH H 3 403 224 HOH HOH . L 9 HOH H 4 404 235 HOH HOH . L 9 HOH H 5 405 179 HOH HOH . L 9 HOH H 6 406 166 HOH HOH . L 9 HOH H 7 407 279 HOH HOH . L 9 HOH H 8 408 85 HOH HOH . L 9 HOH H 9 409 252 HOH HOH . L 9 HOH H 10 410 103 HOH HOH . L 9 HOH H 11 411 138 HOH HOH . L 9 HOH H 12 412 158 HOH HOH . L 9 HOH H 13 413 61 HOH HOH . L 9 HOH H 14 414 217 HOH HOH . L 9 HOH H 15 415 38 HOH HOH . L 9 HOH H 16 416 132 HOH HOH . L 9 HOH H 17 417 220 HOH HOH . L 9 HOH H 18 418 58 HOH HOH . L 9 HOH H 19 419 49 HOH HOH . L 9 HOH H 20 420 154 HOH HOH . L 9 HOH H 21 421 96 HOH HOH . L 9 HOH H 22 422 136 HOH HOH . L 9 HOH H 23 423 164 HOH HOH . L 9 HOH H 24 424 156 HOH HOH . L 9 HOH H 25 425 225 HOH HOH . L 9 HOH H 26 426 47 HOH HOH . L 9 HOH H 27 427 72 HOH HOH . L 9 HOH H 28 428 201 HOH HOH . L 9 HOH H 29 429 202 HOH HOH . L 9 HOH H 30 430 203 HOH HOH . L 9 HOH H 31 431 99 HOH HOH . L 9 HOH H 32 432 171 HOH HOH . L 9 HOH H 33 433 118 HOH HOH . L 9 HOH H 34 434 59 HOH HOH . L 9 HOH H 35 435 102 HOH HOH . L 9 HOH H 36 436 82 HOH HOH . L 9 HOH H 37 437 35 HOH HOH . L 9 HOH H 38 438 71 HOH HOH . L 9 HOH H 39 439 63 HOH HOH . L 9 HOH H 40 440 2 HOH HOH . L 9 HOH H 41 441 65 HOH HOH . L 9 HOH H 42 442 15 HOH HOH . L 9 HOH H 43 443 29 HOH HOH . L 9 HOH H 44 444 94 HOH HOH . L 9 HOH H 45 445 22 HOH HOH . L 9 HOH H 46 446 31 HOH HOH . L 9 HOH H 47 447 7 HOH HOH . L 9 HOH H 48 448 262 HOH HOH . L 9 HOH H 49 449 183 HOH HOH . L 9 HOH H 50 450 176 HOH HOH . L 9 HOH H 51 451 8 HOH HOH . L 9 HOH H 52 452 116 HOH HOH . L 9 HOH H 53 453 178 HOH HOH . L 9 HOH H 54 454 141 HOH HOH . L 9 HOH H 55 455 23 HOH HOH . L 9 HOH H 56 456 173 HOH HOH . L 9 HOH H 57 457 76 HOH HOH . L 9 HOH H 58 458 219 HOH HOH . L 9 HOH H 59 459 5 HOH HOH . L 9 HOH H 60 460 90 HOH HOH . L 9 HOH H 61 461 128 HOH HOH . L 9 HOH H 62 462 19 HOH HOH . L 9 HOH H 63 463 27 HOH HOH . L 9 HOH H 64 464 9 HOH HOH . L 9 HOH H 65 465 3 HOH HOH . L 9 HOH H 66 466 206 HOH HOH . L 9 HOH H 67 467 64 HOH HOH . L 9 HOH H 68 468 36 HOH HOH . L 9 HOH H 69 469 265 HOH HOH . L 9 HOH H 70 470 39 HOH HOH . L 9 HOH H 71 471 114 HOH HOH . L 9 HOH H 72 472 67 HOH HOH . L 9 HOH H 73 473 182 HOH HOH . L 9 HOH H 74 474 264 HOH HOH . L 9 HOH H 75 475 14 HOH HOH . L 9 HOH H 76 476 20 HOH HOH . L 9 HOH H 77 477 87 HOH HOH . L 9 HOH H 78 478 147 HOH HOH . L 9 HOH H 79 479 12 HOH HOH . L 9 HOH H 80 480 42 HOH HOH . L 9 HOH H 81 481 18 HOH HOH . L 9 HOH H 82 482 66 HOH HOH . L 9 HOH H 83 483 187 HOH HOH . L 9 HOH H 84 484 253 HOH HOH . L 9 HOH H 85 485 204 HOH HOH . L 9 HOH H 86 486 25 HOH HOH . L 9 HOH H 87 487 149 HOH HOH . L 9 HOH H 88 488 4 HOH HOH . L 9 HOH H 89 489 124 HOH HOH . L 9 HOH H 90 490 143 HOH HOH . L 9 HOH H 91 491 53 HOH HOH . L 9 HOH H 92 492 119 HOH HOH . L 9 HOH H 93 493 41 HOH HOH . L 9 HOH H 94 494 56 HOH HOH . L 9 HOH H 95 495 130 HOH HOH . L 9 HOH H 96 496 28 HOH HOH . L 9 HOH H 97 497 117 HOH HOH . L 9 HOH H 98 498 21 HOH HOH . L 9 HOH H 99 499 32 HOH HOH . L 9 HOH H 100 500 207 HOH HOH . L 9 HOH H 101 501 104 HOH HOH . L 9 HOH H 102 502 200 HOH HOH . L 9 HOH H 103 503 238 HOH HOH . L 9 HOH H 104 504 34 HOH HOH . L 9 HOH H 105 505 40 HOH HOH . L 9 HOH H 106 506 191 HOH HOH . L 9 HOH H 107 507 284 HOH HOH . L 9 HOH H 108 508 68 HOH HOH . L 9 HOH H 109 509 106 HOH HOH . L 9 HOH H 110 510 52 HOH HOH . L 9 HOH H 111 511 1 HOH HOH . L 9 HOH H 112 512 11 HOH HOH . L 9 HOH H 113 513 33 HOH HOH . L 9 HOH H 114 514 70 HOH HOH . L 9 HOH H 115 515 152 HOH HOH . L 9 HOH H 116 516 88 HOH HOH . L 9 HOH H 117 517 163 HOH HOH . L 9 HOH H 118 518 139 HOH HOH . L 9 HOH H 119 519 10 HOH HOH . L 9 HOH H 120 520 226 HOH HOH . L 9 HOH H 121 521 258 HOH HOH . L 9 HOH H 122 522 62 HOH HOH . L 9 HOH H 123 523 234 HOH HOH . L 9 HOH H 124 524 129 HOH HOH . L 9 HOH H 125 525 282 HOH HOH . L 9 HOH H 126 526 244 HOH HOH . L 9 HOH H 127 527 115 HOH HOH . L 9 HOH H 128 528 285 HOH HOH . L 9 HOH H 129 529 254 HOH HOH . L 9 HOH H 130 530 145 HOH HOH . L 9 HOH H 131 531 137 HOH HOH . L 9 HOH H 132 532 232 HOH HOH . L 9 HOH H 133 533 95 HOH HOH . L 9 HOH H 134 534 113 HOH HOH . L 9 HOH H 135 535 80 HOH HOH . L 9 HOH H 136 536 151 HOH HOH . L 9 HOH H 137 537 16 HOH HOH . L 9 HOH H 138 538 112 HOH HOH . L 9 HOH H 139 539 97 HOH HOH . L 9 HOH H 140 540 110 HOH HOH . L 9 HOH H 141 541 46 HOH HOH . L 9 HOH H 142 542 74 HOH HOH . L 9 HOH H 143 543 165 HOH HOH . L 9 HOH H 144 544 197 HOH HOH . L 9 HOH H 145 545 175 HOH HOH . L 9 HOH H 146 546 212 HOH HOH . L 9 HOH H 147 547 186 HOH HOH . L 9 HOH H 148 548 122 HOH HOH . L 9 HOH H 149 549 92 HOH HOH . L 9 HOH H 150 550 78 HOH HOH . L 9 HOH H 151 551 89 HOH HOH . L 9 HOH H 152 552 109 HOH HOH . L 9 HOH H 153 553 79 HOH HOH . L 9 HOH H 154 554 86 HOH HOH . L 9 HOH H 155 555 75 HOH HOH . L 9 HOH H 156 556 126 HOH HOH . L 9 HOH H 157 557 222 HOH HOH . L 9 HOH H 158 558 150 HOH HOH . L 9 HOH H 159 559 192 HOH HOH . L 9 HOH H 160 560 236 HOH HOH . L 9 HOH H 161 561 193 HOH HOH . L 9 HOH H 162 562 281 HOH HOH . L 9 HOH H 163 563 180 HOH HOH . L 9 HOH H 164 564 274 HOH HOH . L 9 HOH H 165 565 172 HOH HOH . L 9 HOH H 166 566 133 HOH HOH . L 9 HOH H 167 567 280 HOH HOH . L 9 HOH H 168 568 242 HOH HOH . L 9 HOH H 169 569 43 HOH HOH . L 9 HOH H 170 570 57 HOH HOH . L 9 HOH H 171 571 190 HOH HOH . L 9 HOH H 172 572 24 HOH HOH . L 9 HOH H 173 573 127 HOH HOH . L 9 HOH H 174 574 194 HOH HOH . L 9 HOH H 175 575 188 HOH HOH . L 9 HOH H 176 576 210 HOH HOH . L 9 HOH H 177 577 263 HOH HOH . L 9 HOH H 178 578 205 HOH HOH . L 9 HOH H 179 579 273 HOH HOH . L 9 HOH H 180 580 111 HOH HOH . L 9 HOH H 181 581 157 HOH HOH . L 9 HOH H 182 582 239 HOH HOH . L 9 HOH H 183 583 218 HOH HOH . L 9 HOH H 184 584 251 HOH HOH . L 9 HOH H 185 585 93 HOH HOH . L 9 HOH H 186 586 275 HOH HOH . L 9 HOH H 187 587 160 HOH HOH . L 9 HOH H 188 588 261 HOH HOH . L 9 HOH H 189 589 125 HOH HOH . L 9 HOH H 190 590 246 HOH HOH . L 9 HOH H 191 591 185 HOH HOH . L 9 HOH H 192 592 107 HOH HOH . L 9 HOH H 193 593 283 HOH HOH . L 9 HOH H 194 594 227 HOH HOH . L 9 HOH H 195 595 255 HOH HOH . M 9 HOH I 1 601 245 HOH HOH . M 9 HOH I 2 602 140 HOH HOH . M 9 HOH I 3 603 148 HOH HOH . M 9 HOH I 4 604 247 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 5 20.865 -13.92 25.788 0.9 60.5 ? S DMS 303 H 1 HETATM 2 O O DMS . . . F 5 20.798 -12.622 26.547 0.9 58.59 ? O DMS 303 H 1 HETATM 3 C C1 DMS . . . F 5 19.545 -13.983 24.549 0.9 60.42 ? C1 DMS 303 H 1 HETATM 4 C C2 DMS . . . F 5 22.323 -13.935 24.711 0.9 60.27 ? C2 DMS 303 H 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #