data_7ACG # _model_server_result.job_id Gd88uiHZCATNa8L7TET7VA _model_server_result.datetime_utc '2024-11-30 04:40:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7acg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":511}' # _entry.id 7ACG # _exptl.entry_id 7ACG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.732 _cell.angle_gamma 90 _cell.entry_id 7ACG _cell.length_a 56.751 _cell.length_b 74.187 _cell.length_c 114.992 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ACG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 125 A ALA 105 1_555 P NA NA . A NA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 A O THR 128 A THR 108 1_555 P NA NA . A NA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc3 A O TYR 130 A TYR 110 1_555 P NA NA . A NA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc4 A O GLU 133 A GLU 113 1_555 P NA NA . A NA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc5 A OE1 GLU 133 A GLU 113 1_555 P NA NA . A NA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc6 A OD1 ASN 262 A ASN 242 1_555 Q NA NA . A NA 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc7 A OD1 ASN 308 A ASN 288 1_555 Q NA NA . A NA 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc8 P NA NA . A NA 515 1_555 S O HOH . A HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 161 n n C1 O2 CIT sing 162 n n C1 C2 CIT sing 163 n n O2 HO2 CIT sing 164 n n C2 C3 CIT sing 165 n n C2 H21 CIT sing 166 n n C2 H22 CIT sing 167 n n C3 O7 CIT sing 168 n n C3 C4 CIT sing 169 n n C3 C6 CIT sing 170 n n O7 HO7 CIT sing 171 n n C4 C5 CIT sing 172 n n C4 H41 CIT sing 173 n n C4 H42 CIT sing 174 n n C5 O3 CIT doub 175 n n C5 O4 CIT sing 176 n n O4 HO4 CIT sing 177 n n C6 O5 CIT doub 178 n n C6 O6 CIT sing 179 n n O6 HO6 CIT sing 180 n n # _atom_sites.entry_id 7ACG _atom_sites.fract_transf_matrix[1][1] 0.017621 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003981 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LH9 A 1 501 1 LH9 LH9 . C 2 LH9 A 1 502 2 LH9 LH9 . D 3 1PE A 1 503 3 1PE PE5 . E 2 LH9 A 1 504 4 LH9 LH9 . F 2 LH9 A 1 505 5 LH9 LH9 . G 2 LH9 A 1 506 6 LH9 LH9 . H 2 LH9 A 1 507 7 LH9 LH9 . I 4 SO4 A 1 508 8 SO4 SO4 . J 5 C8E A 1 509 9 C8E C8E . K 2 LH9 A 1 510 10 LH9 LH9 . L 6 CIT A 1 511 11 CIT FLC . M 7 PG0 A 1 512 12 PG0 PE5 . N 2 LH9 A 1 513 13 LH9 LH9 . O 2 LH9 A 1 514 14 LH9 LH9 . P 8 NA A 1 515 15 NA NA . Q 8 NA A 1 516 16 NA NA . R 2 LH9 A 1 517 17 LH9 LH9 . S 9 HOH A 1 601 112 HOH HOH . S 9 HOH A 2 602 100 HOH HOH . S 9 HOH A 3 603 14 HOH HOH . S 9 HOH A 4 604 35 HOH HOH . S 9 HOH A 5 605 54 HOH HOH . S 9 HOH A 6 606 59 HOH HOH . S 9 HOH A 7 607 84 HOH HOH . S 9 HOH A 8 608 2 HOH HOH . S 9 HOH A 9 609 85 HOH HOH . S 9 HOH A 10 610 113 HOH HOH . S 9 HOH A 11 611 12 HOH HOH . S 9 HOH A 12 612 65 HOH HOH . S 9 HOH A 13 613 75 HOH HOH . S 9 HOH A 14 614 61 HOH HOH . S 9 HOH A 15 615 16 HOH HOH . S 9 HOH A 16 616 32 HOH HOH . S 9 HOH A 17 617 29 HOH HOH . S 9 HOH A 18 618 41 HOH HOH . S 9 HOH A 19 619 6 HOH HOH . S 9 HOH A 20 620 87 HOH HOH . S 9 HOH A 21 621 39 HOH HOH . S 9 HOH A 22 622 46 HOH HOH . S 9 HOH A 23 623 3 HOH HOH . S 9 HOH A 24 624 49 HOH HOH . S 9 HOH A 25 625 22 HOH HOH . S 9 HOH A 26 626 66 HOH HOH . S 9 HOH A 27 627 103 HOH HOH . S 9 HOH A 28 628 5 HOH HOH . S 9 HOH A 29 629 93 HOH HOH . S 9 HOH A 30 630 42 HOH HOH . S 9 HOH A 31 631 94 HOH HOH . S 9 HOH A 32 632 48 HOH HOH . S 9 HOH A 33 633 73 HOH HOH . S 9 HOH A 34 634 7 HOH HOH . S 9 HOH A 35 635 76 HOH HOH . S 9 HOH A 36 636 77 HOH HOH . S 9 HOH A 37 637 62 HOH HOH . S 9 HOH A 38 638 53 HOH HOH . S 9 HOH A 39 639 38 HOH HOH . S 9 HOH A 40 640 27 HOH HOH . S 9 HOH A 41 641 21 HOH HOH . S 9 HOH A 42 642 83 HOH HOH . S 9 HOH A 43 643 47 HOH HOH . S 9 HOH A 44 644 90 HOH HOH . S 9 HOH A 45 645 72 HOH HOH . S 9 HOH A 46 646 17 HOH HOH . S 9 HOH A 47 647 4 HOH HOH . S 9 HOH A 48 648 40 HOH HOH . S 9 HOH A 49 649 89 HOH HOH . S 9 HOH A 50 650 56 HOH HOH . S 9 HOH A 51 651 10 HOH HOH . S 9 HOH A 52 652 80 HOH HOH . S 9 HOH A 53 653 101 HOH HOH . S 9 HOH A 54 654 111 HOH HOH . S 9 HOH A 55 655 1 HOH HOH . S 9 HOH A 56 656 55 HOH HOH . S 9 HOH A 57 657 95 HOH HOH . S 9 HOH A 58 658 45 HOH HOH . S 9 HOH A 59 659 52 HOH HOH . S 9 HOH A 60 660 57 HOH HOH . S 9 HOH A 61 661 20 HOH HOH . S 9 HOH A 62 662 108 HOH HOH . S 9 HOH A 63 663 79 HOH HOH . S 9 HOH A 64 664 11 HOH HOH . S 9 HOH A 65 665 81 HOH HOH . S 9 HOH A 66 666 92 HOH HOH . S 9 HOH A 67 667 18 HOH HOH . S 9 HOH A 68 668 9 HOH HOH . S 9 HOH A 69 669 44 HOH HOH . S 9 HOH A 70 670 88 HOH HOH . S 9 HOH A 71 671 110 HOH HOH . S 9 HOH A 72 672 34 HOH HOH . S 9 HOH A 73 673 50 HOH HOH . S 9 HOH A 74 674 23 HOH HOH . S 9 HOH A 75 675 25 HOH HOH . S 9 HOH A 76 676 70 HOH HOH . S 9 HOH A 77 677 15 HOH HOH . S 9 HOH A 78 678 63 HOH HOH . S 9 HOH A 79 679 102 HOH HOH . S 9 HOH A 80 680 31 HOH HOH . S 9 HOH A 81 681 24 HOH HOH . S 9 HOH A 82 682 67 HOH HOH . S 9 HOH A 83 683 28 HOH HOH . S 9 HOH A 84 684 8 HOH HOH . S 9 HOH A 85 685 19 HOH HOH . S 9 HOH A 86 686 58 HOH HOH . S 9 HOH A 87 687 36 HOH HOH . S 9 HOH A 88 688 107 HOH HOH . S 9 HOH A 89 689 26 HOH HOH . S 9 HOH A 90 690 69 HOH HOH . S 9 HOH A 91 691 43 HOH HOH . S 9 HOH A 92 692 98 HOH HOH . S 9 HOH A 93 693 37 HOH HOH . S 9 HOH A 94 694 97 HOH HOH . S 9 HOH A 95 695 114 HOH HOH . S 9 HOH A 96 696 105 HOH HOH . S 9 HOH A 97 697 71 HOH HOH . S 9 HOH A 98 698 51 HOH HOH . S 9 HOH A 99 699 68 HOH HOH . S 9 HOH A 100 700 96 HOH HOH . S 9 HOH A 101 701 82 HOH HOH . S 9 HOH A 102 702 33 HOH HOH . S 9 HOH A 103 703 86 HOH HOH . S 9 HOH A 104 704 13 HOH HOH . S 9 HOH A 105 705 78 HOH HOH . S 9 HOH A 106 706 91 HOH HOH . S 9 HOH A 107 707 99 HOH HOH . S 9 HOH A 108 708 60 HOH HOH . S 9 HOH A 109 709 30 HOH HOH . S 9 HOH A 110 710 106 HOH HOH . S 9 HOH A 111 711 64 HOH HOH . S 9 HOH A 112 712 104 HOH HOH . S 9 HOH A 113 713 109 HOH HOH . S 9 HOH A 114 714 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . L 6 7.315 1.816 37.916 1 48.92 ? C1 CIT 511 A 1 HETATM 2 O O1 CIT . . . L 6 8.326 2.481 38.26 1 45.52 ? O1 CIT 511 A 1 HETATM 3 O O2 CIT . . . L 6 6.452 1.491 38.774 1 48.79 ? O2 CIT 511 A 1 HETATM 4 C C2 CIT . . . L 6 7.123 1.407 36.457 1 39.7 ? C2 CIT 511 A 1 HETATM 5 C C3 CIT . . . L 6 8.296 1.848 35.58 1 44.62 ? C3 CIT 511 A 1 HETATM 6 O O7 CIT . . . L 6 8.438 3.25 35.593 1 35.8 ? O7 CIT 511 A 1 HETATM 7 C C4 CIT . . . L 6 8.003 1.367 34.154 1 37.94 ? C4 CIT 511 A 1 HETATM 8 C C5 CIT . . . L 6 6.847 2.178 33.561 1 50.94 ? C5 CIT 511 A 1 HETATM 9 O O3 CIT . . . L 6 7.064 3.296 33.02 1 30.1 ? O3 CIT 511 A 1 HETATM 10 O O4 CIT . . . L 6 5.667 1.733 33.612 1 35 ? O4 CIT 511 A 1 HETATM 11 C C6 CIT . . . L 6 9.591 1.204 36.073 1 37.42 ? C6 CIT 511 A 1 HETATM 12 O O5 CIT . . . L 6 9.642 -0.04 36.263 1 42.9 ? O5 CIT 511 A 1 HETATM 13 O O6 CIT . . . L 6 10.605 1.919 36.292 1 31.03 ? O6 CIT 511 A 1 HETATM 14 H H21 CIT . . . L 6 7.033 0.329 36.405 1 47.65 ? H21 CIT 511 A 1 HETATM 15 H H22 CIT . . . L 6 6.215 1.863 36.083 1 47.65 ? H22 CIT 511 A 1 HETATM 16 H HO7 CIT . . . L 6 8.577 3.574 34.716 1 42.96 ? HO7 CIT 511 A 1 HETATM 17 H H41 CIT . . . L 6 7.732 0.319 34.177 1 45.53 ? H41 CIT 511 A 1 HETATM 18 H H42 CIT . . . L 6 8.886 1.499 33.542 1 45.53 ? H42 CIT 511 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #