data_7AD3
#
_model_server_result.job_id            aptW19YqP9zsrXIjMxRAHQ 
_model_server_result.datetime_utc      '2024-12-03 18:48:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ad3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":503}' 
#
_entry.id    7AD3 
#
_exptl.entry_id    7AD3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AD3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AD3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 K N N 
? 7 L N N 
? 7 N N N 
? 7 O N N 
? 7 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 25 B ASN 25 1_555 I C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 B ND2 ASN 25 A ASN 25 1_555 M C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 404 n n 
CBA CAB Y01 sing 405 n n 
CBA CAN Y01 sing 406 n n 
CAN CAJ Y01 sing 407 n n 
CAJ CAO Y01 sing 408 n n 
CAO CBB Y01 sing 409 n n 
CBB CAC Y01 sing 410 n n 
CBB CBE Y01 sing 411 n n 
CBE CAP Y01 sing 412 n n 
CBE CBI Y01 sing 413 n n 
CAP CAQ Y01 sing 414 n n 
CAQ CBG Y01 sing 415 n n 
CBG CBI Y01 sing 416 n n 
CBG CBD Y01 sing 417 n n 
CBI CAE Y01 sing 418 n n 
CBI CAU Y01 sing 419 n n 
CAU CAS Y01 sing 420 n n 
CAS CBF Y01 sing 421 n n 
CBF CBD Y01 sing 422 n n 
CBF CBH Y01 sing 423 n n 
CBD CAK Y01 sing 424 n n 
CAK CAI Y01 sing 425 n n 
CAI CAZ Y01 doub 426 n n 
CAZ CAV Y01 sing 427 n n 
CAZ CBH Y01 sing 428 n n 
CAV CBC Y01 sing 429 n n 
CBH CAD Y01 sing 430 n n 
CBH CAT Y01 sing 431 n n 
CAT CAR Y01 sing 432 n n 
CAR CBC Y01 sing 433 n n 
CBC OAW Y01 sing 434 n n 
OAW CAY Y01 sing 435 n n 
CAY OAG Y01 doub 436 n n 
CAY CAM Y01 sing 437 n n 
CAM CAL Y01 sing 438 n n 
CAL CAX Y01 sing 439 n n 
CAX OAH Y01 sing 440 n n 
CAX OAF Y01 doub 441 n n 
CAA HAA1 Y01 sing 442 n n 
CAA HAA2 Y01 sing 443 n n 
CAA HAA3 Y01 sing 444 n n 
CBA HBA Y01 sing 445 n n 
CAB HAB1 Y01 sing 446 n n 
CAB HAB2 Y01 sing 447 n n 
CAB HAB3 Y01 sing 448 n n 
CAN HAN1 Y01 sing 449 n n 
CAN HAN2 Y01 sing 450 n n 
CAJ HAJ1 Y01 sing 451 n n 
CAJ HAJ2 Y01 sing 452 n n 
CAO HAO1 Y01 sing 453 n n 
CAO HAO2 Y01 sing 454 n n 
CBB HBB Y01 sing 455 n n 
CAC HAC1 Y01 sing 456 n n 
CAC HAC2 Y01 sing 457 n n 
CAC HAC3 Y01 sing 458 n n 
CBE HBE Y01 sing 459 n n 
CAP HAP1 Y01 sing 460 n n 
CAP HAP2 Y01 sing 461 n n 
CAQ HAQ1 Y01 sing 462 n n 
CAQ HAQ2 Y01 sing 463 n n 
CBG HBG Y01 sing 464 n n 
CBD HBD Y01 sing 465 n n 
CAE HAE1 Y01 sing 466 n n 
CAE HAE2 Y01 sing 467 n n 
CAE HAE3 Y01 sing 468 n n 
CAU HAU1 Y01 sing 469 n n 
CAU HAU2 Y01 sing 470 n n 
CAS HAS1 Y01 sing 471 n n 
CAS HAS2 Y01 sing 472 n n 
CBF HBF Y01 sing 473 n n 
CAK HAK1 Y01 sing 474 n n 
CAK HAK2 Y01 sing 475 n n 
CAI HAI Y01 sing 476 n n 
CAV HAV1 Y01 sing 477 n n 
CAV HAV2 Y01 sing 478 n n 
CBC HBC Y01 sing 479 n n 
CAD HAD1 Y01 sing 480 n n 
CAD HAD2 Y01 sing 481 n n 
CAD HAD3 Y01 sing 482 n n 
CAT HAT1 Y01 sing 483 n n 
CAT HAT2 Y01 sing 484 n n 
CAR HAR1 Y01 sing 485 n n 
CAR HAR2 Y01 sing 486 n n 
CAM HAM1 Y01 sing 487 n n 
CAM HAM2 Y01 sing 488 n n 
CAL HAL1 Y01 sing 489 n n 
CAL HAL2 Y01 sing 490 n n 
OAH HAH Y01 sing 491 n n 
#
_atom_sites.entry_id                     7AD3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 6 NAG B 1 501 317 NAG NAG . 
J 7 Y01 B 1 502 1 Y01 Y01 . 
K 7 Y01 B 1 503 1 Y01 Y01 . 
L 7 Y01 B 1 504 1 Y01 Y01 . 
M 6 NAG A 1 501 307 NAG NAG . 
N 7 Y01 A 1 502 1 Y01 Y01 . 
O 7 Y01 A 1 503 1 Y01 Y01 . 
P 7 Y01 A 1 504 2 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . K 7 114.73 98.271 123.424 1 21.53 ? CAA Y01 503 B 1 
HETATM 2 C CBA Y01 . . . K 7 116.16 97.852 123.119 1 21.53 ? CBA Y01 503 B 1 
HETATM 3 C CAB Y01 . . . K 7 116.179 96.735 122.088 1 21.53 ? CAB Y01 503 B 1 
HETATM 4 C CAN Y01 . . . K 7 116.905 97.449 124.392 1 21.53 ? CAN Y01 503 B 1 
HETATM 5 C CAJ Y01 . . . K 7 118.379 97.158 124.225 1 21.53 ? CAJ Y01 503 B 1 
HETATM 6 C CAO Y01 . . . K 7 119.165 97.368 125.494 1 21.53 ? CAO Y01 503 B 1 
HETATM 7 C CBB Y01 . . . K 7 120.586 96.78 125.503 1 21.53 ? CBB Y01 503 B 1 
HETATM 8 C CAC Y01 . . . K 7 121.342 97.205 124.245 1 21.53 ? CAC Y01 503 B 1 
HETATM 9 C CBE Y01 . . . K 7 121.312 97.173 126.807 1 21.53 ? CBE Y01 503 B 1 
HETATM 10 C CAP Y01 . . . K 7 120.36 97.126 128.042 1 21.53 ? CAP Y01 503 B 1 
HETATM 11 C CAQ Y01 . . . K 7 121.11 96.387 129.15 1 21.53 ? CAQ Y01 503 B 1 
HETATM 12 C CBG Y01 . . . K 7 122.553 96.665 128.786 1 21.53 ? CBG Y01 503 B 1 
HETATM 13 C CBI Y01 . . . K 7 122.591 96.382 127.269 1 21.53 ? CBI Y01 503 B 1 
HETATM 14 C CAE Y01 . . . K 7 122.427 94.885 126.953 1 21.53 ? CAE Y01 503 B 1 
HETATM 15 C CAU Y01 . . . K 7 123.944 96.898 126.76 1 21.53 ? CAU Y01 503 B 1 
HETATM 16 C CAS Y01 . . . K 7 125.118 96.279 127.528 1 21.53 ? CAS Y01 503 B 1 
HETATM 17 C CBF Y01 . . . K 7 125.027 96.489 129.048 1 21.53 ? CBF Y01 503 B 1 
HETATM 18 C CBD Y01 . . . K 7 123.667 96.026 129.606 1 21.53 ? CBD Y01 503 B 1 
HETATM 19 C CAK Y01 . . . K 7 123.535 96.428 131.074 1 21.53 ? CAK Y01 503 B 1 
HETATM 20 C CAI Y01 . . . K 7 124.814 96.31 131.838 1 21.53 ? CAI Y01 503 B 1 
HETATM 21 C CAZ Y01 . . . K 7 125.982 95.965 131.321 1 21.53 ? CAZ Y01 503 B 1 
HETATM 22 C CAV Y01 . . . K 7 127.172 95.703 132.217 1 21.53 ? CAV Y01 503 B 1 
HETATM 23 C CBH Y01 . . . K 7 126.234 95.878 129.819 1 21.53 ? CBH Y01 503 B 1 
HETATM 24 C CAD Y01 . . . K 7 126.458 94.4 129.451 1 21.53 ? CAD Y01 503 B 1 
HETATM 25 C CAT Y01 . . . K 7 127.502 96.698 129.482 1 21.53 ? CAT Y01 503 B 1 
HETATM 26 C CAR Y01 . . . K 7 128.701 96.416 130.394 1 21.53 ? CAR Y01 503 B 1 
HETATM 27 C CBC Y01 . . . K 7 128.341 96.595 131.849 1 21.53 ? CBC Y01 503 B 1 
HETATM 28 O OAW Y01 . . . K 7 129.444 96.505 132.818 1 21.53 ? OAW Y01 503 B 1 
HETATM 29 C CAY Y01 . . . K 7 130.194 95.378 132.913 1 21.53 ? CAY Y01 503 B 1 
HETATM 30 O OAG Y01 . . . K 7 129.97 94.352 132.333 1 21.53 ? OAG Y01 503 B 1 
HETATM 31 C CAM Y01 . . . K 7 131.364 95.575 133.837 1 21.53 ? CAM Y01 503 B 1 
HETATM 32 C CAL Y01 . . . K 7 132.714 95.142 133.303 1 21.53 ? CAL Y01 503 B 1 
HETATM 33 C CAX Y01 . . . K 7 133.89 95.469 134.206 1 21.53 ? CAX Y01 503 B 1 
HETATM 34 O OAH Y01 . . . K 7 134.828 96.14 133.731 1 21.53 ? OAH Y01 503 B 1 
HETATM 35 O OAF Y01 . . . K 7 133.862 95.06 135.384 1 21.53 ? OAF Y01 503 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    108 
_model_server_stats.query_time_ms           941 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           35 
#