data_7ADH # _model_server_result.job_id qO1gDmbCE5RgODOsoWwKFQ _model_server_result.datetime_utc '2024-12-26 20:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7adh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":385}' # _entry.id 7ADH # _exptl.entry_id 7ADH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 121.14 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ISONICOTINAMIDINE _entity.pdbx_number_of_molecules 23 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104 _cell.angle_gamma 90 _cell.entry_id 7ADH _cell.length_a 177.8 _cell.length_b 61.2 _cell.length_c 56.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ADH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 103 1_555 A SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? covale ? covale1 A NZ LYS 5 A LYS 5 1_555 D CI1 NTN . A NTN 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale2 A NZ LYS 8 A LYS 8 1_555 E CI1 NTN . A NTN 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale3 A NZ LYS 10 A LYS 10 1_555 F CI1 NTN . A NTN 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale4 A NZ LYS 18 A LYS 18 1_555 G CI1 NTN . A NTN 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? covale ? covale5 A NZ LYS 19 A LYS 19 1_555 H CI1 NTN . A NTN 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale6 A NZ LYS 32 A LYS 32 1_555 I CI1 NTN . A NTN 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? covale ? covale7 A NZ LYS 39 A LYS 39 1_555 J CI1 NTN . A NTN 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? covale ? covale8 A NZ LYS 88 A LYS 88 1_555 K CI1 NTN . A NTN 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale9 A NZ LYS 99 A LYS 99 1_555 L CI1 NTN . A NTN 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale10 A NZ LYS 113 A LYS 113 1_555 M CI1 NTN . A NTN 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.271 ? covale ? covale11 A NZ LYS 135 A LYS 135 1_555 N CI1 NTN . A NTN 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.29 ? covale ? covale12 A NZ LYS 159 A LYS 159 1_555 O CI1 NTN . A NTN 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale13 A NZ LYS 168 A LYS 168 1_555 P CI1 NTN . A NTN 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale14 A NZ LYS 185 A LYS 185 1_555 Q CI1 NTN . A NTN 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.29 ? covale ? covale15 A NZ LYS 188 A LYS 188 1_555 R CI1 NTN . A NTN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale16 A NZ LYS 212 A LYS 212 1_555 S CI1 NTN . A NTN 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.218 ? covale ? covale17 A NZ LYS 226 A LYS 226 1_555 T CI1 NTN . A NTN 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale18 A NZ LYS 228 A LYS 228 1_555 U CI1 NTN . A NTN 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.245 ? covale ? covale19 A NZ LYS 231 A LYS 231 1_555 V CI1 NTN . A NTN 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale20 A NZ LYS 247 A LYS 247 1_555 W CI1 NTN . A NTN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.288 ? covale ? covale21 A NZ LYS 325 A LYS 325 1_555 X CI1 NTN . A NTN 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? covale ? covale22 A NZ LYS 330 A LYS 330 1_555 Y CI1 NTN . A NTN 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.236 ? covale ? covale23 A NZ LYS 354 A LYS 354 1_555 Z CI1 NTN . A NTN 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.28 ? metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 B ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 B ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 C ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 C ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 C ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 C ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc7 A SG CYS 174 A CYS 174 1_555 B ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? # _chem_comp.formula 'C6 H7 N3' _chem_comp.formula_weight 121.14 _chem_comp.id NTN _chem_comp.mon_nstd_flag . _chem_comp.name ISONICOTINAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NZ CI1 NTN sing 235 n n NZ HZ1 NTN sing 236 n n NZ HZ2 NTN sing 237 n n CI1 CI2 NTN sing 238 n n CI1 NI1 NTN doub 239 n n CI2 CI3 NTN doub 240 n y CI2 CI6 NTN sing 241 n y NI1 H2 NTN sing 242 n n CI3 CI4 NTN sing 243 n y CI3 H3 NTN sing 244 n n CI4 NI2 NTN doub 245 n y CI4 H4 NTN sing 246 n n NI2 CI5 NTN sing 247 n y CI5 CI6 NTN doub 248 n y CI5 H5 NTN sing 249 n n CI6 H6 NTN sing 250 n n # _atom_sites.entry_id 7ADH _atom_sites.fract_transf_matrix[1][1] 0.005624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001402 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 375 1 ZN ZN . C 2 ZN A 1 376 2 ZN ZN . D 3 NTN A 1 377 5 NTN INI . E 3 NTN A 1 378 8 NTN INI . F 3 NTN A 1 379 10 NTN INI . G 3 NTN A 1 380 18 NTN INI . H 3 NTN A 1 381 19 NTN INI . I 3 NTN A 1 382 32 NTN INI . J 3 NTN A 1 383 39 NTN INI . K 3 NTN A 1 384 88 NTN INI . L 3 NTN A 1 385 99 NTN INI . M 3 NTN A 1 386 113 NTN INI . N 3 NTN A 1 387 135 NTN INI . O 3 NTN A 1 388 159 NTN INI . P 3 NTN A 1 389 168 NTN INI . Q 3 NTN A 1 390 185 NTN INI . R 3 NTN A 1 391 188 NTN INI . S 3 NTN A 1 392 212 NTN INI . T 3 NTN A 1 393 226 NTN INI . U 3 NTN A 1 394 228 NTN INI . V 3 NTN A 1 395 231 NTN INI . W 3 NTN A 1 396 247 NTN INI . X 3 NTN A 1 397 325 NTN INI . Y 3 NTN A 1 398 330 NTN INI . Z 3 NTN A 1 399 354 NTN INI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CI1 NTN . . . L 3 -19.856 25.904 30.536 1 20 ? CI1 NTN 385 A 1 HETATM 2 C CI2 NTN . . . L 3 -19.79 25.834 32.002 1 20 ? CI2 NTN 385 A 1 HETATM 3 N NI1 NTN . . . L 3 -20.863 25.853 29.712 1 20 ? NI1 NTN 385 A 1 HETATM 4 C CI3 NTN . . . L 3 -20.888 25.678 32.852 1 20 ? CI3 NTN 385 A 1 HETATM 5 C CI4 NTN . . . L 3 -20.653 25.622 34.255 1 20 ? CI4 NTN 385 A 1 HETATM 6 N NI2 NTN . . . L 3 -19.351 25.726 34.757 1 20 ? NI2 NTN 385 A 1 HETATM 7 C CI5 NTN . . . L 3 -18.279 25.882 33.881 1 20 ? CI5 NTN 385 A 1 HETATM 8 C CI6 NTN . . . L 3 -18.506 25.934 32.521 1 20 ? CI6 NTN 385 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #