data_7ADQ # _model_server_result.job_id YDXpwlmaHX1XOzmlOPhZug _model_server_result.datetime_utc '2024-10-10 10:22:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7adq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7ADQ # _exptl.entry_id 7ADQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ADQ _cell.length_a 60.8 _cell.length_b 67.3 _cell.length_c 67.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ADQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 90 A HIS 89 1_555 D FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 B NE2 HIS 90 B HIS 89 1_555 F FE HEM . B HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7ADQ _atom_sites.fract_transf_matrix[1][1] 0.016447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 301 SO4 SO4 . D 3 HEM A 1 302 401 HEM HEM . E 2 SO4 B 1 301 301 SO4 SO4 . F 3 HEM B 1 302 401 HEM HEM . G 4 HOH A 1 401 111 HOH HOH . G 4 HOH A 2 402 107 HOH HOH . G 4 HOH A 3 403 149 HOH HOH . G 4 HOH A 4 404 126 HOH HOH . G 4 HOH A 5 405 91 HOH HOH . G 4 HOH A 6 406 57 HOH HOH . G 4 HOH A 7 407 138 HOH HOH . G 4 HOH A 8 408 6 HOH HOH . G 4 HOH A 9 409 45 HOH HOH . G 4 HOH A 10 410 76 HOH HOH . G 4 HOH A 11 411 152 HOH HOH . G 4 HOH A 12 412 44 HOH HOH . G 4 HOH A 13 413 53 HOH HOH . G 4 HOH A 14 414 23 HOH HOH . G 4 HOH A 15 415 120 HOH HOH . G 4 HOH A 16 416 89 HOH HOH . G 4 HOH A 17 417 3 HOH HOH . G 4 HOH A 18 418 17 HOH HOH . G 4 HOH A 19 419 92 HOH HOH . G 4 HOH A 20 420 10 HOH HOH . G 4 HOH A 21 421 70 HOH HOH . G 4 HOH A 22 422 29 HOH HOH . G 4 HOH A 23 423 158 HOH HOH . G 4 HOH A 24 424 2 HOH HOH . G 4 HOH A 25 425 58 HOH HOH . G 4 HOH A 26 426 15 HOH HOH . G 4 HOH A 27 427 155 HOH HOH . G 4 HOH A 28 428 153 HOH HOH . G 4 HOH A 29 429 32 HOH HOH . G 4 HOH A 30 430 4 HOH HOH . G 4 HOH A 31 431 30 HOH HOH . G 4 HOH A 32 432 72 HOH HOH . G 4 HOH A 33 433 19 HOH HOH . G 4 HOH A 34 434 135 HOH HOH . G 4 HOH A 35 435 108 HOH HOH . G 4 HOH A 36 436 97 HOH HOH . G 4 HOH A 37 437 95 HOH HOH . G 4 HOH A 38 438 12 HOH HOH . G 4 HOH A 39 439 150 HOH HOH . G 4 HOH A 40 440 154 HOH HOH . G 4 HOH A 41 441 56 HOH HOH . G 4 HOH A 42 442 26 HOH HOH . G 4 HOH A 43 443 117 HOH HOH . G 4 HOH A 44 444 113 HOH HOH . G 4 HOH A 45 445 66 HOH HOH . G 4 HOH A 46 446 16 HOH HOH . G 4 HOH A 47 447 83 HOH HOH . G 4 HOH A 48 448 42 HOH HOH . G 4 HOH A 49 449 36 HOH HOH . G 4 HOH A 50 450 21 HOH HOH . G 4 HOH A 51 451 68 HOH HOH . G 4 HOH A 52 452 116 HOH HOH . G 4 HOH A 53 453 67 HOH HOH . G 4 HOH A 54 454 39 HOH HOH . G 4 HOH A 55 455 80 HOH HOH . G 4 HOH A 56 456 104 HOH HOH . G 4 HOH A 57 457 34 HOH HOH . G 4 HOH A 58 458 139 HOH HOH . G 4 HOH A 59 459 86 HOH HOH . G 4 HOH A 60 460 64 HOH HOH . G 4 HOH A 61 461 123 HOH HOH . G 4 HOH A 62 462 74 HOH HOH . G 4 HOH A 63 463 122 HOH HOH . G 4 HOH A 64 464 93 HOH HOH . H 4 HOH B 1 401 51 HOH HOH . H 4 HOH B 2 402 105 HOH HOH . H 4 HOH B 3 403 79 HOH HOH . H 4 HOH B 4 404 165 HOH HOH . H 4 HOH B 5 405 28 HOH HOH . H 4 HOH B 6 406 128 HOH HOH . H 4 HOH B 7 407 61 HOH HOH . H 4 HOH B 8 408 133 HOH HOH . H 4 HOH B 9 409 78 HOH HOH . H 4 HOH B 10 410 77 HOH HOH . H 4 HOH B 11 411 62 HOH HOH . H 4 HOH B 12 412 103 HOH HOH . H 4 HOH B 13 413 1 HOH HOH . H 4 HOH B 14 414 142 HOH HOH . H 4 HOH B 15 415 75 HOH HOH . H 4 HOH B 16 416 55 HOH HOH . H 4 HOH B 17 417 9 HOH HOH . H 4 HOH B 18 418 5 HOH HOH . H 4 HOH B 19 419 46 HOH HOH . H 4 HOH B 20 420 43 HOH HOH . H 4 HOH B 21 421 94 HOH HOH . H 4 HOH B 22 422 48 HOH HOH . H 4 HOH B 23 423 38 HOH HOH . H 4 HOH B 24 424 24 HOH HOH . H 4 HOH B 25 425 132 HOH HOH . H 4 HOH B 26 426 14 HOH HOH . H 4 HOH B 27 427 31 HOH HOH . H 4 HOH B 28 428 35 HOH HOH . H 4 HOH B 29 429 18 HOH HOH . H 4 HOH B 30 430 129 HOH HOH . H 4 HOH B 31 431 136 HOH HOH . H 4 HOH B 32 432 162 HOH HOH . H 4 HOH B 33 433 33 HOH HOH . H 4 HOH B 34 434 27 HOH HOH . H 4 HOH B 35 435 144 HOH HOH . H 4 HOH B 36 436 114 HOH HOH . H 4 HOH B 37 437 156 HOH HOH . H 4 HOH B 38 438 47 HOH HOH . H 4 HOH B 39 439 11 HOH HOH . H 4 HOH B 40 440 8 HOH HOH . H 4 HOH B 41 441 49 HOH HOH . H 4 HOH B 42 442 41 HOH HOH . H 4 HOH B 43 443 141 HOH HOH . H 4 HOH B 44 444 121 HOH HOH . H 4 HOH B 45 445 50 HOH HOH . H 4 HOH B 46 446 52 HOH HOH . H 4 HOH B 47 447 124 HOH HOH . H 4 HOH B 48 448 54 HOH HOH . H 4 HOH B 49 449 7 HOH HOH . H 4 HOH B 50 450 90 HOH HOH . H 4 HOH B 51 451 85 HOH HOH . H 4 HOH B 52 452 110 HOH HOH . H 4 HOH B 53 453 131 HOH HOH . H 4 HOH B 54 454 13 HOH HOH . H 4 HOH B 55 455 63 HOH HOH . H 4 HOH B 56 456 82 HOH HOH . H 4 HOH B 57 457 84 HOH HOH . H 4 HOH B 58 458 37 HOH HOH . H 4 HOH B 59 459 112 HOH HOH . H 4 HOH B 60 460 102 HOH HOH . H 4 HOH B 61 461 160 HOH HOH . H 4 HOH B 62 462 59 HOH HOH . H 4 HOH B 63 463 151 HOH HOH . H 4 HOH B 64 464 137 HOH HOH . H 4 HOH B 65 465 109 HOH HOH . H 4 HOH B 66 466 164 HOH HOH . H 4 HOH B 67 467 81 HOH HOH . H 4 HOH B 68 468 143 HOH HOH . H 4 HOH B 69 469 161 HOH HOH . H 4 HOH B 70 470 125 HOH HOH . H 4 HOH B 71 471 100 HOH HOH . H 4 HOH B 72 472 40 HOH HOH . H 4 HOH B 73 473 145 HOH HOH . H 4 HOH B 74 474 69 HOH HOH . H 4 HOH B 75 475 119 HOH HOH . H 4 HOH B 76 476 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 5.066 6.429 -11.711 1 15.51 ? CHA HEM 302 A 1 HETATM 2 C CHB HEM . . . D 3 3.629 7.527 -16.222 1 8.28 ? CHB HEM 302 A 1 HETATM 3 C CHC HEM . . . D 3 7.775 5.824 -18.054 1 15.51 ? CHC HEM 302 A 1 HETATM 4 C CHD HEM . . . D 3 9.23 4.762 -13.551 1 17.98 ? CHD HEM 302 A 1 HETATM 5 C C1A HEM . . . D 3 4.301 6.85 -12.778 1 12.68 ? C1A HEM 302 A 1 HETATM 6 C C2A HEM . . . D 3 2.943 7.355 -12.717 1 16.72 ? C2A HEM 302 A 1 HETATM 7 C C3A HEM . . . D 3 2.554 7.653 -13.959 1 15.93 ? C3A HEM 302 A 1 HETATM 8 C C4A HEM . . . D 3 3.648 7.353 -14.857 1 9.5 ? C4A HEM 302 A 1 HETATM 9 C CMA HEM . . . D 3 1.181 8.227 -14.372 1 14.92 ? CMA HEM 302 A 1 HETATM 10 C CAA HEM . . . D 3 2.09 7.527 -11.443 1 16.85 ? CAA HEM 302 A 1 HETATM 11 C CBA HEM . . . D 3 1.18 6.316 -11.273 1 24.57 ? CBA HEM 302 A 1 HETATM 12 C CGA HEM . . . D 3 0.456 6.425 -9.958 1 30.15 ? CGA HEM 302 A 1 HETATM 13 O O1A HEM . . . D 3 -0.095 5.395 -9.489 1 30.16 ? O1A HEM 302 A 1 HETATM 14 O O2A HEM . . . D 3 0.438 7.541 -9.375 1 40.07 ? O2A HEM 302 A 1 HETATM 15 C C1B HEM . . . D 3 4.614 7.163 -17.11 1 11.95 ? C1B HEM 302 A 1 HETATM 16 C C2B HEM . . . D 3 4.552 7.324 -18.543 1 12.47 ? C2B HEM 302 A 1 HETATM 17 C C3B HEM . . . D 3 5.685 6.858 -19.076 1 12.3 ? C3B HEM 302 A 1 HETATM 18 C C4B HEM . . . D 3 6.519 6.384 -17.981 1 13.55 ? C4B HEM 302 A 1 HETATM 19 C CMB HEM . . . D 3 3.36 7.931 -19.312 1 10.29 ? CMB HEM 302 A 1 HETATM 20 C CAB HEM . . . D 3 5.99 6.863 -20.596 1 11.6 ? CAB HEM 302 A 1 HETATM 21 C CBB HEM . . . D 3 7.107 6.337 -21.106 1 16.05 ? CBB HEM 302 A 1 HETATM 22 C C1C HEM . . . D 3 8.5 5.328 -16.996 1 15.39 ? C1C HEM 302 A 1 HETATM 23 C C2C HEM . . . D 3 9.72 4.555 -17.091 1 14.17 ? C2C HEM 302 A 1 HETATM 24 C C3C HEM . . . D 3 10.127 4.27 -15.845 1 16.3 ? C3C HEM 302 A 1 HETATM 25 C C4C HEM . . . D 3 9.166 4.841 -14.924 1 15.71 ? C4C HEM 302 A 1 HETATM 26 C CMC HEM . . . D 3 10.399 4.172 -18.426 1 16.89 ? CMC HEM 302 A 1 HETATM 27 C CAC HEM . . . D 3 11.362 3.455 -15.39 1 19.77 ? CAC HEM 302 A 1 HETATM 28 C CBC HEM . . . D 3 12.025 2.651 -16.227 1 20.37 ? CBC HEM 302 A 1 HETATM 29 C C1D HEM . . . D 3 8.235 5.105 -12.662 1 19.66 ? C1D HEM 302 A 1 HETATM 30 C C2D HEM . . . D 3 8.278 4.899 -11.23 1 17.03 ? C2D HEM 302 A 1 HETATM 31 C C3D HEM . . . D 3 7.128 5.346 -10.709 1 17.63 ? C3D HEM 302 A 1 HETATM 32 C C4D HEM . . . D 3 6.321 5.868 -11.801 1 13.47 ? C4D HEM 302 A 1 HETATM 33 C CMD HEM . . . D 3 9.457 4.256 -10.466 1 23.15 ? CMD HEM 302 A 1 HETATM 34 C CAD HEM . . . D 3 6.756 5.326 -9.207 1 20.36 ? CAD HEM 302 A 1 HETATM 35 C CBD HEM . . . D 3 5.336 4.811 -8.971 1 28.95 ? CBD HEM 302 A 1 HETATM 36 C CGD HEM . . . D 3 4.983 3.727 -9.956 1 24.67 ? CGD HEM 302 A 1 HETATM 37 N NA HEM . . . D 3 4.699 6.864 -14.104 1 11.58 ? NA HEM 302 A 1 HETATM 38 N NB HEM . . . D 3 5.829 6.588 -16.799 1 8.01 ? NB HEM 302 A 1 HETATM 39 N NC HEM . . . D 3 8.191 5.485 -15.658 1 14.2 ? NC HEM 302 A 1 HETATM 40 N ND HEM . . . D 3 7.028 5.698 -12.976 1 18.53 ? ND HEM 302 A 1 HETATM 41 FE FE HEM . . . D 3 6.505 6.311 -14.876 1 14.46 ? FE HEM 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #