data_7AE6 # _model_server_result.job_id E9S3BC27sWy889oyS60iNA _model_server_result.datetime_utc '2024-10-10 10:27:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ae6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7AE6 # _exptl.entry_id 7AE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AE6 _cell.length_a 60.443 _cell.length_b 62.722 _cell.length_c 84.356 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OH TYR 109 A TYR 109 1_555 C P AMP . A AMP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale2 C O3' AMP . A AMP 201 1_555 D P AMP . A AMP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale3 B OH TYR 109 B TYR 109 1_555 H P AMP . B AMP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.579 ? covale ? covale4 H O3' AMP . B AMP 201 1_555 I P AMP . B AMP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 7AE6 _atom_sites.fract_transf_matrix[1][1] 0.016545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 201 201 AMP AMP . D 2 AMP A 1 202 202 AMP AMP . E 3 EDO A 1 203 1 EDO EDO . F 3 EDO A 1 204 2 EDO EDO . G 3 EDO A 1 205 6 EDO EDO . H 2 AMP B 1 201 201 AMP AMP . I 2 AMP B 1 202 202 AMP AMP . J 3 EDO B 1 203 3 EDO EDO . K 3 EDO B 1 204 4 EDO EDO . L 3 EDO B 1 205 5 EDO EDO . M 4 HOH A 1 301 100 HOH HOH . M 4 HOH A 2 302 96 HOH HOH . M 4 HOH A 3 303 99 HOH HOH . M 4 HOH A 4 304 78 HOH HOH . M 4 HOH A 5 305 16 HOH HOH . M 4 HOH A 6 306 77 HOH HOH . M 4 HOH A 7 307 97 HOH HOH . M 4 HOH A 8 308 69 HOH HOH . M 4 HOH A 9 309 24 HOH HOH . M 4 HOH A 10 310 7 HOH HOH . M 4 HOH A 11 311 102 HOH HOH . M 4 HOH A 12 312 15 HOH HOH . M 4 HOH A 13 313 33 HOH HOH . M 4 HOH A 14 314 116 HOH HOH . M 4 HOH A 15 315 43 HOH HOH . M 4 HOH A 16 316 58 HOH HOH . M 4 HOH A 17 317 83 HOH HOH . M 4 HOH A 18 318 63 HOH HOH . M 4 HOH A 19 319 47 HOH HOH . M 4 HOH A 20 320 60 HOH HOH . M 4 HOH A 21 321 10 HOH HOH . M 4 HOH A 22 322 71 HOH HOH . M 4 HOH A 23 323 4 HOH HOH . M 4 HOH A 24 324 46 HOH HOH . M 4 HOH A 25 325 12 HOH HOH . M 4 HOH A 26 326 74 HOH HOH . M 4 HOH A 27 327 92 HOH HOH . M 4 HOH A 28 328 17 HOH HOH . M 4 HOH A 29 329 75 HOH HOH . M 4 HOH A 30 330 70 HOH HOH . M 4 HOH A 31 331 41 HOH HOH . M 4 HOH A 32 332 38 HOH HOH . M 4 HOH A 33 333 113 HOH HOH . M 4 HOH A 34 334 95 HOH HOH . M 4 HOH A 35 335 39 HOH HOH . M 4 HOH A 36 336 30 HOH HOH . M 4 HOH A 37 337 66 HOH HOH . M 4 HOH A 38 338 111 HOH HOH . M 4 HOH A 39 339 89 HOH HOH . M 4 HOH A 40 340 91 HOH HOH . M 4 HOH A 41 341 98 HOH HOH . M 4 HOH A 42 342 112 HOH HOH . M 4 HOH A 43 343 29 HOH HOH . M 4 HOH A 44 344 90 HOH HOH . M 4 HOH A 45 345 103 HOH HOH . M 4 HOH A 46 346 121 HOH HOH . N 4 HOH B 1 301 80 HOH HOH . N 4 HOH B 2 302 65 HOH HOH . N 4 HOH B 3 303 94 HOH HOH . N 4 HOH B 4 304 19 HOH HOH . N 4 HOH B 5 305 44 HOH HOH . N 4 HOH B 6 306 26 HOH HOH . N 4 HOH B 7 307 117 HOH HOH . N 4 HOH B 8 308 93 HOH HOH . N 4 HOH B 9 309 62 HOH HOH . N 4 HOH B 10 310 84 HOH HOH . N 4 HOH B 11 311 13 HOH HOH . N 4 HOH B 12 312 28 HOH HOH . N 4 HOH B 13 313 67 HOH HOH . N 4 HOH B 14 314 22 HOH HOH . N 4 HOH B 15 315 31 HOH HOH . N 4 HOH B 16 316 37 HOH HOH . N 4 HOH B 17 317 51 HOH HOH . N 4 HOH B 18 318 115 HOH HOH . N 4 HOH B 19 319 49 HOH HOH . N 4 HOH B 20 320 59 HOH HOH . N 4 HOH B 21 321 18 HOH HOH . N 4 HOH B 22 322 57 HOH HOH . N 4 HOH B 23 323 76 HOH HOH . N 4 HOH B 24 324 23 HOH HOH . N 4 HOH B 25 325 53 HOH HOH . N 4 HOH B 26 326 40 HOH HOH . N 4 HOH B 27 327 27 HOH HOH . N 4 HOH B 28 328 79 HOH HOH . N 4 HOH B 29 329 120 HOH HOH . N 4 HOH B 30 330 2 HOH HOH . N 4 HOH B 31 331 34 HOH HOH . N 4 HOH B 32 332 5 HOH HOH . N 4 HOH B 33 333 73 HOH HOH . N 4 HOH B 34 334 118 HOH HOH . N 4 HOH B 35 335 14 HOH HOH . N 4 HOH B 36 336 8 HOH HOH . N 4 HOH B 37 337 55 HOH HOH . N 4 HOH B 38 338 68 HOH HOH . N 4 HOH B 39 339 61 HOH HOH . N 4 HOH B 40 340 50 HOH HOH . N 4 HOH B 41 341 3 HOH HOH . N 4 HOH B 42 342 107 HOH HOH . N 4 HOH B 43 343 81 HOH HOH . N 4 HOH B 44 344 72 HOH HOH . N 4 HOH B 45 345 82 HOH HOH . N 4 HOH B 46 346 6 HOH HOH . N 4 HOH B 47 347 52 HOH HOH . N 4 HOH B 48 348 106 HOH HOH . N 4 HOH B 49 349 42 HOH HOH . N 4 HOH B 50 350 20 HOH HOH . N 4 HOH B 51 351 1 HOH HOH . N 4 HOH B 52 352 114 HOH HOH . N 4 HOH B 53 353 32 HOH HOH . N 4 HOH B 54 354 85 HOH HOH . N 4 HOH B 55 355 64 HOH HOH . N 4 HOH B 56 356 21 HOH HOH . N 4 HOH B 57 357 35 HOH HOH . N 4 HOH B 58 358 11 HOH HOH . N 4 HOH B 59 359 86 HOH HOH . N 4 HOH B 60 360 48 HOH HOH . N 4 HOH B 61 361 54 HOH HOH . N 4 HOH B 62 362 45 HOH HOH . N 4 HOH B 63 363 25 HOH HOH . N 4 HOH B 64 364 9 HOH HOH . N 4 HOH B 65 365 87 HOH HOH . N 4 HOH B 66 366 110 HOH HOH . N 4 HOH B 67 367 104 HOH HOH . N 4 HOH B 68 368 36 HOH HOH . N 4 HOH B 69 369 56 HOH HOH . N 4 HOH B 70 370 108 HOH HOH . N 4 HOH B 71 371 119 HOH HOH . N 4 HOH B 72 372 109 HOH HOH . N 4 HOH B 73 373 101 HOH HOH . N 4 HOH B 74 374 105 HOH HOH . N 4 HOH B 75 375 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 2 47.836 69.565 18.727 1 44.6 ? P AMP 201 A 1 HETATM 2 O O1P AMP . . . C 2 46.957 68.784 17.775 1 41.93 ? O1P AMP 201 A 1 HETATM 3 O O2P AMP . . . C 2 47.323 70.787 19.452 1 47.83 ? O2P AMP 201 A 1 HETATM 4 O O5' AMP . . . C 2 48.445 68.554 19.794 1 41.07 ? O5' AMP 201 A 1 HETATM 5 C C5' AMP . . . C 2 49.155 69.019 20.942 1 42.05 ? C5' AMP 201 A 1 HETATM 6 C C4' AMP . . . C 2 49.485 67.861 21.846 1 41.03 ? C4' AMP 201 A 1 HETATM 7 O O4' AMP . . . C 2 48.34 67.587 22.708 1 40.9 ? O4' AMP 201 A 1 HETATM 8 C C3' AMP . . . C 2 49.775 66.561 21.094 1 35.94 ? C3' AMP 201 A 1 HETATM 9 O O3' AMP . . . C 2 50.79 65.822 21.772 1 45.24 ? O3' AMP 201 A 1 HETATM 10 C C2' AMP . . . C 2 48.446 65.809 21.185 1 35.42 ? C2' AMP 201 A 1 HETATM 11 O O2' AMP . . . C 2 48.567 64.409 21.075 1 37.41 ? O2' AMP 201 A 1 HETATM 12 C C1' AMP . . . C 2 47.956 66.232 22.567 1 38.01 ? C1' AMP 201 A 1 HETATM 13 N N9 AMP . . . C 2 46.505 66.139 22.776 1 34.02 ? N9 AMP 201 A 1 HETATM 14 C C8 AMP . . . C 2 45.521 66.602 21.971 1 33.62 ? C8 AMP 201 A 1 HETATM 15 N N7 AMP . . . C 2 44.289 66.351 22.516 1 35.43 ? N7 AMP 201 A 1 HETATM 16 C C5 AMP . . . C 2 44.475 65.716 23.693 1 33.84 ? C5 AMP 201 A 1 HETATM 17 C C6 AMP . . . C 2 43.618 65.155 24.765 1 39.96 ? C6 AMP 201 A 1 HETATM 18 N N6 AMP . . . C 2 42.261 65.224 24.706 1 41.85 ? N6 AMP 201 A 1 HETATM 19 N N1 AMP . . . C 2 44.23 64.572 25.816 1 40.54 ? N1 AMP 201 A 1 HETATM 20 C C2 AMP . . . C 2 45.571 64.495 25.899 1 41.98 ? C2 AMP 201 A 1 HETATM 21 N N3 AMP . . . C 2 46.404 64.977 24.961 1 37.13 ? N3 AMP 201 A 1 HETATM 22 C C4 AMP . . . C 2 45.933 65.585 23.852 1 35.95 ? C4 AMP 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #