data_7AEM # _model_server_result.job_id pRJO9uw7ryQCtASN3eF6FQ _model_server_result.datetime_utc '2024-12-23 12:40:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 7AEM # _exptl.entry_id 7AEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.092 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloro-N~4~-[2-(dimethylphosphoryl)phenyl]-N~2~-{2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AEM _cell.length_a 146.43 _cell.length_b 146.43 _cell.length_c 146.43 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H39 Cl N7 O2 P' _chem_comp.formula_weight 584.092 _chem_comp.id 6GY _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloro-N~4~-[2-(dimethylphosphoryl)phenyl]-N~2~-{2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Brigatinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 N25 6GY sing 1 n n N25 C26 6GY sing 2 n n N25 C24 6GY sing 3 n n C26 C27 6GY sing 4 n n C27 N22 6GY sing 5 n n C24 C23 6GY sing 6 n n C23 N22 6GY sing 7 n n N22 C19 6GY sing 8 n n C20 C19 6GY sing 9 n n C20 C21 6GY sing 10 n n C19 C18 6GY sing 11 n n C21 N16 6GY sing 12 n n C18 C17 6GY sing 13 n n N16 C17 6GY sing 14 n n N16 C11 6GY sing 15 n n C34 C33 6GY doub 16 n y C34 C35 6GY sing 17 n y C33 C32 6GY sing 18 n y C11 C12 6GY doub 19 n y C11 C10 6GY sing 20 n y C12 C13 6GY sing 21 n y C35 C30 6GY doub 22 n y C10 C9 6GY doub 23 n y C32 C31 6GY doub 24 n y C13 O14 6GY sing 25 n n C13 C8 6GY doub 26 n y O14 C15 6GY sing 27 n n C30 C31 6GY sing 28 n y C30 N29 6GY sing 29 n n C9 C8 6GY sing 30 n y C8 N7 6GY sing 31 n n C31 P1 6GY sing 32 n n N29 C2 6GY sing 33 n n N3 C2 6GY doub 34 n y N3 C4 6GY sing 35 n y N7 C4 6GY sing 36 n n C2 C1 6GY sing 37 n y C4 N5 6GY doub 38 n y C3 P1 6GY sing 39 n n P1 O41 6GY doub 40 n n P1 C37 6GY sing 41 n n C1 C6 6GY doub 42 n y C1 CL 6GY sing 43 n n N5 C6 6GY sing 44 n y C3 H1 6GY sing 45 n n C3 H2 6GY sing 46 n n C3 H3 6GY sing 47 n n C6 H4 6GY sing 48 n n C9 H5 6GY sing 49 n n C10 H6 6GY sing 50 n n C12 H7 6GY sing 51 n n C15 H8 6GY sing 52 n n C15 H9 6GY sing 53 n n C15 H10 6GY sing 54 n n C18 H11 6GY sing 55 n n C18 H12 6GY sing 56 n n C26 H13 6GY sing 57 n n C26 H14 6GY sing 58 n n N7 H15 6GY sing 59 n n C17 H16 6GY sing 60 n n C17 H17 6GY sing 61 n n C19 H18 6GY sing 62 n n C20 H19 6GY sing 63 n n C20 H20 6GY sing 64 n n C21 H21 6GY sing 65 n n C21 H22 6GY sing 66 n n C23 H24 6GY sing 67 n n C23 H25 6GY sing 68 n n C24 H26 6GY sing 69 n n C24 H27 6GY sing 70 n n C27 H29 6GY sing 71 n n C27 H30 6GY sing 72 n n C28 H31 6GY sing 73 n n C28 H32 6GY sing 74 n n C28 H33 6GY sing 75 n n N29 H34 6GY sing 76 n n C32 H35 6GY sing 77 n n C33 H36 6GY sing 78 n n C34 H37 6GY sing 79 n n C35 H38 6GY sing 80 n n C37 H39 6GY sing 81 n n C37 H40 6GY sing 82 n n C37 H41 6GY sing 83 n n # _atom_sites.entry_id 7AEM _atom_sites.fract_transf_matrix[1][1] 0.006829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006829 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6GY A 1 1101 1 6GY INH . C 3 HOH A 1 1201 2 HOH HOH . C 3 HOH A 2 1202 6 HOH HOH . C 3 HOH A 3 1203 1 HOH HOH . C 3 HOH A 4 1204 3 HOH HOH . C 3 HOH A 5 1205 7 HOH HOH . C 3 HOH A 6 1206 5 HOH HOH . C 3 HOH A 7 1207 4 HOH HOH . C 3 HOH A 8 1208 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6GY . . . B 2 -53.884 0.545 -22.934 1 84 ? C1 6GY 1101 A 1 HETATM 2 C C2 6GY . . . B 2 -53.046 -0.147 -22.062 1 83.4 ? C2 6GY 1101 A 1 HETATM 3 C C3 6GY . . . B 2 -52.135 -4.832 -23.362 1 89.04 ? C3 6GY 1101 A 1 HETATM 4 C C4 6GY . . . B 2 -53.81 1.173 -20.353 1 79.46 ? C4 6GY 1101 A 1 HETATM 5 C C6 6GY . . . B 2 -54.666 1.558 -22.412 1 80.61 ? C6 6GY 1101 A 1 HETATM 6 C C9 6GY . . . B 2 -52.58 -0.415 -18.126 1 84.25 ? C9 6GY 1101 A 1 HETATM 7 C C10 6GY . . . B 2 -51.805 -0.963 -17.12 1 88.4 ? C10 6GY 1101 A 1 HETATM 8 C C11 6GY . . . B 2 -51.432 -0.205 -16.013 1 94.09 ? C11 6GY 1101 A 1 HETATM 9 C C12 6GY . . . B 2 -51.855 1.122 -15.935 1 88.17 ? C12 6GY 1101 A 1 HETATM 10 C C13 6GY . . . B 2 -52.629 1.671 -16.938 1 82.74 ? C13 6GY 1101 A 1 HETATM 11 O O14 6GY . . . B 2 -53.087 2.958 -16.945 1 78.76 ? O14 6GY 1101 A 1 HETATM 12 C C15 6GY . . . B 2 -53.256 3.604 -15.686 1 78.73 ? C15 6GY 1101 A 1 HETATM 13 C C18 6GY . . . B 2 -48.433 -1.379 -14.145 1 114.32 ? C18 6GY 1101 A 1 HETATM 14 C C26 6GY . . . B 2 -47.05 -2.757 -9.763 1 131.18 ? C26 6GY 1101 A 1 HETATM 15 N N3 6GY . . . B 2 -53.008 0.17 -20.758 1 79.2 ? N3 6GY 1101 A 1 HETATM 16 N N5 6GY . . . B 2 -54.644 1.89 -21.119 1 77.31 ? N5 6GY 1101 A 1 HETATM 17 N N7 6GY . . . B 2 -53.782 1.505 -19.033 1 82.71 ? N7 6GY 1101 A 1 HETATM 18 C C8 6GY . . . B 2 -53 0.908 -18.045 1 82.81 ? C8 6GY 1101 A 1 HETATM 19 N N16 6GY . . . B 2 -50.657 -0.761 -15.012 1 104.91 ? N16 6GY 1101 A 1 HETATM 20 C C17 6GY . . . B 2 -49.241 -0.389 -14.976 1 109.54 ? C17 6GY 1101 A 1 HETATM 21 C C19 6GY . . . B 2 -49.009 -1.494 -12.74 1 118.7 ? C19 6GY 1101 A 1 HETATM 22 C C20 6GY . . . B 2 -50.498 -1.81 -12.787 1 113.79 ? C20 6GY 1101 A 1 HETATM 23 C C21 6GY . . . B 2 -51.232 -0.805 -13.666 1 109.02 ? C21 6GY 1101 A 1 HETATM 24 N N22 6GY . . . B 2 -48.248 -2.405 -11.87 1 126.42 ? N22 6GY 1101 A 1 HETATM 25 C C23 6GY . . . B 2 -48.913 -3.699 -11.672 1 129.01 ? C23 6GY 1101 A 1 HETATM 26 C C24 6GY . . . B 2 -48.027 -4.628 -10.868 1 130.28 ? C24 6GY 1101 A 1 HETATM 27 N N25 6GY . . . B 2 -47.706 -4.046 -9.568 1 131.33 ? N25 6GY 1101 A 1 HETATM 28 C C27 6GY . . . B 2 -47.93 -1.818 -10.563 1 129.37 ? C27 6GY 1101 A 1 HETATM 29 C C28 6GY . . . B 2 -46.853 -4.948 -8.794 1 131.16 ? C28 6GY 1101 A 1 HETATM 30 N N29 6GY . . . B 2 -52.258 -1.154 -22.535 1 85.52 ? N29 6GY 1101 A 1 HETATM 31 C C30 6GY . . . B 2 -50.986 -1.548 -22.13 1 86.12 ? C30 6GY 1101 A 1 HETATM 32 C C31 6GY . . . B 2 -50.364 -2.638 -22.785 1 88.37 ? C31 6GY 1101 A 1 HETATM 33 C C32 6GY . . . B 2 -49.087 -3.034 -22.378 1 88.55 ? C32 6GY 1101 A 1 HETATM 34 C C33 6GY . . . B 2 -48.436 -2.374 -21.351 1 87.2 ? C33 6GY 1101 A 1 HETATM 35 C C34 6GY . . . B 2 -49.043 -1.314 -20.715 1 85.59 ? C34 6GY 1101 A 1 HETATM 36 C C35 6GY . . . B 2 -50.308 -0.9 -21.098 1 85.12 ? C35 6GY 1101 A 1 HETATM 37 P P1 6GY . . . B 2 -51.127 -3.563 -24.133 1 89.82 ? P1 6GY 1101 A 1 HETATM 38 C C37 6GY . . . B 2 -49.792 -4.42 -24.97 1 86.65 ? C37 6GY 1101 A 1 HETATM 39 O O41 6GY . . . B 2 -51.912 -2.632 -24.975 1 92.05 ? O41 6GY 1101 A 1 HETATM 40 CL CL 6GY . . . B 2 -53.968 0.172 -24.625 1 85.59 ? CL 6GY 1101 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 423 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 40 #