data_7AER # _model_server_result.job_id mjhp4ejOA6suO-_1NMm8Cw _model_server_result.datetime_utc '2025-08-31 07:58:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 7AER # _exptl.entry_id 7AER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AER _cell.length_a 56.61 _cell.length_b 224.38 _cell.length_c 53.31 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AER _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 109 A SER 109 1_555 A N MSE 110 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 110 A MSE 110 1_555 A N TYR 111 A TYR 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C VAL 125 A VAL 125 1_555 A N MSE 126 A MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 126 A MSE 126 1_555 A N ALA 127 A ALA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C MSE 1 B MSE 1 1_555 B N ASN 2 B ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 B C LYS 92 B LYS 92 1_555 B N MSE 93 B MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C MSE 93 B MSE 93 1_555 B N VAL 94 B VAL 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B OH TYR 104 B TYR 104 1_555 E P AMP . B AMP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? covale ? covale9 E O3' AMP . B AMP 201 1_555 F P AMP . B AMP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale10 F O3' AMP . B AMP 202 1_555 G P AMP . B AMP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale11 C C LYS 92 C LYS 92 1_555 C N MSE 93 C MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 C C MSE 93 C MSE 93 1_555 C N VAL 94 C VAL 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 C OH TYR 104 C TYR 104 1_555 H P AMP . C AMP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? covale ? covale14 H O3' AMP . C AMP 201 1_555 I P AMP . C AMP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? covale ? covale15 I O3' AMP . C AMP 202 1_555 J P AMP . C AMP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? covale ? covale16 D C LYS 92 D LYS 92 1_555 D N MSE 93 D MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 D C MSE 93 D MSE 93 1_555 D N VAL 94 D VAL 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 7AER _atom_sites.fract_transf_matrix[1][1] 0.017665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004457 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AMP B 1 201 201 AMP AMP . F 3 AMP B 1 202 202 AMP AMP . G 3 AMP B 1 203 203 AMP AMP . H 3 AMP C 1 201 201 AMP AMP . I 3 AMP C 1 202 202 AMP AMP . J 3 AMP C 1 203 203 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . F 3 -2.265 49.346 5.333 1 60.91 ? P AMP 202 B 1 HETATM 2 O O1P AMP . . . F 3 -3.429 49.818 4.499 1 89.71 ? O1P AMP 202 B 1 HETATM 3 O O2P AMP . . . F 3 -2.254 49.719 6.797 1 71.42 ? O2P AMP 202 B 1 HETATM 4 O O5' AMP . . . F 3 -0.927 49.956 4.719 1 53.73 ? O5' AMP 202 B 1 HETATM 5 C C5' AMP . . . F 3 -0.808 51.357 4.512 1 61.15 ? C5' AMP 202 B 1 HETATM 6 C C4' AMP . . . F 3 0.525 51.727 3.914 1 60.59 ? C4' AMP 202 B 1 HETATM 7 O O4' AMP . . . F 3 0.728 50.981 2.689 1 65.58 ? O4' AMP 202 B 1 HETATM 8 C C3' AMP . . . F 3 0.676 53.177 3.481 1 62.8 ? C3' AMP 202 B 1 HETATM 9 O O3' AMP . . . F 3 0.957 54.063 4.553 1 70.3 ? O3' AMP 202 B 1 HETATM 10 C C2' AMP . . . F 3 1.784 53.099 2.44 1 67.71 ? C2' AMP 202 B 1 HETATM 11 O O2' AMP . . . F 3 3.056 53.026 3.067 1 73.03 ? O2' AMP 202 B 1 HETATM 12 C C1' AMP . . . F 3 1.493 51.747 1.782 1 63.62 ? C1' AMP 202 B 1 HETATM 13 N N9 AMP . . . F 3 0.728 51.898 0.53 1 59.53 ? N9 AMP 202 B 1 HETATM 14 C C8 AMP . . . F 3 -0.613 51.874 0.41 1 72.4 ? C8 AMP 202 B 1 HETATM 15 N N7 AMP . . . F 3 -0.993 52.044 -0.883 1 75.61 ? N7 AMP 202 B 1 HETATM 16 C C5 AMP . . . F 3 0.127 52.184 -1.618 1 71.02 ? C5 AMP 202 B 1 HETATM 17 C C6 AMP . . . F 3 0.449 52.395 -3.049 1 71.57 ? C6 AMP 202 B 1 HETATM 18 N N6 AMP . . . F 3 -0.531 52.495 -3.979 1 78.54 ? N6 AMP 202 B 1 HETATM 19 N N1 AMP . . . F 3 1.752 52.485 -3.394 1 64.6 ? N1 AMP 202 B 1 HETATM 20 C C2 AMP . . . F 3 2.734 52.388 -2.479 1 74.01 ? C2 AMP 202 B 1 HETATM 21 N N3 AMP . . . F 3 2.515 52.196 -1.166 1 70.8 ? N3 AMP 202 B 1 HETATM 22 C C4 AMP . . . F 3 1.256 52.087 -0.682 1 57.13 ? C4 AMP 202 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #