data_7AER
#
_model_server_result.job_id            yReyo0q5Fe9YXlJKo5TfKw 
_model_server_result.datetime_utc      '2025-08-31 07:58:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7aer 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":203}' 
#
_entry.id    7AER 
#
_exptl.entry_id    7AER 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AER 
_cell.length_a            56.61 
_cell.length_b            224.38 
_cell.length_c            53.31 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AER 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 109 A SER 109 1_555 A N MSE 110 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C MSE 110 A MSE 110 1_555 A N TYR 111 A TYR 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 A C VAL 125 A VAL 125 1_555 A N MSE 126 A MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C MSE 126 A MSE 126 1_555 A N ALA 127 A ALA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 B C MSE 1 B MSE 1 1_555 B N ASN 2 B ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 B C LYS 92 B LYS 92 1_555 B N MSE 93 B MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 B C MSE 93 B MSE 93 1_555 B N VAL 94 B VAL 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 B OH TYR 104 B TYR 104 1_555 E P AMP . B AMP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? 
covale ? covale9 E O3' AMP . B AMP 201 1_555 F P AMP . B AMP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? 
covale ? covale10 F O3' AMP . B AMP 202 1_555 G P AMP . B AMP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? 
covale ? covale11 C C LYS 92 C LYS 92 1_555 C N MSE 93 C MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 C C MSE 93 C MSE 93 1_555 C N VAL 94 C VAL 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale13 C OH TYR 104 C TYR 104 1_555 H P AMP . C AMP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? 
covale ? covale14 H O3' AMP . C AMP 201 1_555 I P AMP . C AMP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? 
covale ? covale15 I O3' AMP . C AMP 202 1_555 J P AMP . C AMP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? 
covale ? covale16 D C LYS 92 D LYS 92 1_555 D N MSE 93 D MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale17 D C MSE 93 D MSE 93 1_555 D N VAL 94 D VAL 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     7AER 
_atom_sites.fract_transf_matrix[1][1]    0.017665 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004457 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018758 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 AMP B 1 201 201 AMP AMP . 
F 3 AMP B 1 202 202 AMP AMP . 
G 3 AMP B 1 203 203 AMP AMP . 
H 3 AMP C 1 201 201 AMP AMP . 
I 3 AMP C 1 202 202 AMP AMP . 
J 3 AMP C 1 203 203 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . J 3 22.519 26.055 -4.856 1 77.73 ? P AMP 203 C 1 
HETATM 2 O O1P AMP . . . J 3 22.295 24.593 -4.551 1 87.06 ? O1P AMP 203 C 1 
HETATM 3 O O2P AMP . . . J 3 23.795 26.72 -4.404 1 78.49 ? O2P AMP 203 C 1 
HETATM 4 O O5' AMP . . . J 3 22.428 26.245 -6.434 1 88 ? O5' AMP 203 C 1 
HETATM 5 C C5' AMP . . . J 3 22.748 27.491 -7.036 1 76.09 ? C5' AMP 203 C 1 
HETATM 6 C C4' AMP . . . J 3 24.036 27.409 -7.816 1 80.84 ? C4' AMP 203 C 1 
HETATM 7 O O4' AMP . . . J 3 24.969 28.375 -7.287 1 81.08 ? O4' AMP 203 C 1 
HETATM 8 C C3' AMP . . . J 3 24.769 26.08 -7.711 1 86.01 ? C3' AMP 203 C 1 
HETATM 9 O O3' AMP . . . J 3 24.3 25.124 -8.646 1 81.81 ? O3' AMP 203 C 1 
HETATM 10 C C2' AMP . . . J 3 26.242 26.451 -7.906 1 93.72 ? C2' AMP 203 C 1 
HETATM 11 O O2' AMP . . . J 3 26.604 26.383 -9.277 1 106.5 ? O2' AMP 203 C 1 
HETATM 12 C C1' AMP . . . J 3 26.289 27.917 -7.455 1 85.34 ? C1' AMP 203 C 1 
HETATM 13 N N9 AMP . . . J 3 27.001 28.084 -6.174 1 76.07 ? N9 AMP 203 C 1 
HETATM 14 C C8 AMP . . . J 3 26.691 27.47 -5.017 1 74.34 ? C8 AMP 203 C 1 
HETATM 15 N N7 AMP . . . J 3 27.539 27.84 -4.022 1 73.24 ? N7 AMP 203 C 1 
HETATM 16 C C5 AMP . . . J 3 28.419 28.714 -4.546 1 76.8 ? C5 AMP 203 C 1 
HETATM 17 C C6 AMP . . . J 3 29.578 29.492 -4.048 1 80.44 ? C6 AMP 203 C 1 
HETATM 18 N N6 AMP . . . J 3 29.979 29.407 -2.755 1 73.46 ? N6 AMP 203 C 1 
HETATM 19 N N1 AMP . . . J 3 30.224 30.29 -4.93 1 74.55 ? N1 AMP 203 C 1 
HETATM 20 C C2 AMP . . . J 3 29.838 30.385 -6.217 1 76.7 ? C2 AMP 203 C 1 
HETATM 21 N N3 AMP . . . J 3 28.797 29.709 -6.735 1 76.34 ? N3 AMP 203 C 1 
HETATM 22 C C4 AMP . . . J 3 28.061 28.87 -5.966 1 78.06 ? C4 AMP 203 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
#