data_7AEV # _model_server_result.job_id F-nK4jpu0GIHiHs2AlW_GQ _model_server_result.datetime_utc '2024-11-22 19:34:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 7AEV # _exptl.entry_id 7AEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AEV _cell.length_a 55.7 _cell.length_b 158.1 _cell.length_c 67.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 86 AAA HIS 87 1_555 E FE HEM . AAA HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 B NE2 HIS 91 BBB HIS 92 1_555 G FE HEM . BBB HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 C NE2 HIS 86 CCC HIS 87 1_555 I FE HEM . CCC HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc4 D NE2 HIS 91 DDD HIS 92 1_555 K FE HEM . DDD HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 7AEV _atom_sites.fract_transf_matrix[1][1] 0.017953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM AAA 1 201 150 HEM HEM . F 4 CMO AAA 1 202 151 CMO CMO . G 3 HEM BBB 1 201 150 HEM HEM . H 4 CMO BBB 1 202 151 CMO CMO . I 3 HEM CCC 1 201 150 HEM HEM . J 4 CMO CCC 1 202 151 CMO CMO . K 3 HEM DDD 1 201 150 HEM HEM . L 4 CMO DDD 1 202 151 CMO CMO . M 5 HOH AAA 1 301 50 HOH HOH . M 5 HOH AAA 2 302 17 HOH HOH . M 5 HOH AAA 3 303 24 HOH HOH . M 5 HOH AAA 4 304 18 HOH HOH . M 5 HOH AAA 5 305 21 HOH HOH . M 5 HOH AAA 6 306 2 HOH HOH . M 5 HOH AAA 7 307 14 HOH HOH . M 5 HOH AAA 8 308 22 HOH HOH . M 5 HOH AAA 9 309 19 HOH HOH . M 5 HOH AAA 10 310 26 HOH HOH . M 5 HOH AAA 11 311 10 HOH HOH . M 5 HOH AAA 12 312 25 HOH HOH . N 5 HOH BBB 1 301 36 HOH HOH . N 5 HOH BBB 2 302 7 HOH HOH . N 5 HOH BBB 3 303 13 HOH HOH . N 5 HOH BBB 4 304 49 HOH HOH . N 5 HOH BBB 5 305 12 HOH HOH . N 5 HOH BBB 6 306 42 HOH HOH . N 5 HOH BBB 7 307 6 HOH HOH . N 5 HOH BBB 8 308 23 HOH HOH . N 5 HOH BBB 9 309 11 HOH HOH . N 5 HOH BBB 10 310 20 HOH HOH . O 5 HOH CCC 1 301 3 HOH HOH . O 5 HOH CCC 2 302 30 HOH HOH . O 5 HOH CCC 3 303 8 HOH HOH . O 5 HOH CCC 4 304 4 HOH HOH . O 5 HOH CCC 5 305 5 HOH HOH . O 5 HOH CCC 6 306 29 HOH HOH . O 5 HOH CCC 7 307 28 HOH HOH . O 5 HOH CCC 8 308 32 HOH HOH . P 5 HOH DDD 1 301 1 HOH HOH . P 5 HOH DDD 2 302 45 HOH HOH . P 5 HOH DDD 3 303 16 HOH HOH . P 5 HOH DDD 4 304 44 HOH HOH . P 5 HOH DDD 5 305 47 HOH HOH . P 5 HOH DDD 6 306 40 HOH HOH . P 5 HOH DDD 7 307 9 HOH HOH . P 5 HOH DDD 8 308 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 3 -19.831 -31.807 21.102 1 45.03 ? CHA HEM 201 AAA 1 HETATM 2 C CHB HEM . . . E 3 -15.527 -33.562 22.581 1 42.46 ? CHB HEM 201 AAA 1 HETATM 3 C CHC HEM . . . E 3 -13.426 -29.385 21.158 1 42.22 ? CHC HEM 201 AAA 1 HETATM 4 C CHD HEM . . . E 3 -17.788 -27.465 20.28 1 46.44 ? CHD HEM 201 AAA 1 HETATM 5 C C1A HEM . . . E 3 -18.822 -32.618 21.606 1 47.36 ? C1A HEM 201 AAA 1 HETATM 6 C C2A HEM . . . E 3 -19.028 -33.906 22.166 1 51.53 ? C2A HEM 201 AAA 1 HETATM 7 C C3A HEM . . . E 3 -17.813 -34.403 22.568 1 46.87 ? C3A HEM 201 AAA 1 HETATM 8 C C4A HEM . . . E 3 -16.856 -33.42 22.295 1 44.22 ? C4A HEM 201 AAA 1 HETATM 9 C CMA HEM . . . E 3 -17.514 -35.734 23.208 1 44.11 ? CMA HEM 201 AAA 1 HETATM 10 C CAA HEM . . . E 3 -20.361 -34.62 22.263 1 55.07 ? CAA HEM 201 AAA 1 HETATM 11 C CBA HEM . . . E 3 -20.661 -35.376 20.961 1 57.16 ? CBA HEM 201 AAA 1 HETATM 12 C CGA HEM . . . E 3 -22.056 -35.947 20.967 1 60.33 ? CGA HEM 201 AAA 1 HETATM 13 O O1A HEM . . . E 3 -22.969 -35.459 21.684 1 65.97 ? O1A HEM 201 AAA 1 HETATM 14 O O2A HEM . . . E 3 -22.286 -36.932 20.232 1 63.52 ? O2A HEM 201 AAA 1 HETATM 15 C C1B HEM . . . E 3 -14.606 -32.547 22.304 1 44.62 ? C1B HEM 201 AAA 1 HETATM 16 C C2B HEM . . . E 3 -13.212 -32.729 22.528 1 44.76 ? C2B HEM 201 AAA 1 HETATM 17 C C3B HEM . . . E 3 -12.599 -31.562 22.127 1 44.05 ? C3B HEM 201 AAA 1 HETATM 18 C C4B HEM . . . E 3 -13.683 -30.668 21.638 1 43.4 ? C4B HEM 201 AAA 1 HETATM 19 C CMB HEM . . . E 3 -12.572 -33.986 23.08 1 45.5 ? CMB HEM 201 AAA 1 HETATM 20 C CAB HEM . . . E 3 -11.186 -31.141 22.195 1 42.97 ? CAB HEM 201 AAA 1 HETATM 21 C CBB HEM . . . E 3 -10.278 -31.789 22.904 1 47.39 ? CBB HEM 201 AAA 1 HETATM 22 C C1C HEM . . . E 3 -14.4 -28.48 20.817 1 44.54 ? C1C HEM 201 AAA 1 HETATM 23 C C2C HEM . . . E 3 -14.221 -27.1 20.638 1 44.54 ? C2C HEM 201 AAA 1 HETATM 24 C C3C HEM . . . E 3 -15.461 -26.525 20.374 1 42.28 ? C3C HEM 201 AAA 1 HETATM 25 C C4C HEM . . . E 3 -16.413 -27.6 20.421 1 46.47 ? C4C HEM 201 AAA 1 HETATM 26 C CMC HEM . . . E 3 -12.895 -26.415 20.685 1 47.69 ? CMC HEM 201 AAA 1 HETATM 27 C CAC HEM . . . E 3 -15.827 -25.104 20.19 1 37.54 ? CAC HEM 201 AAA 1 HETATM 28 C CBC HEM . . . E 3 -15.077 -24.083 20.552 1 33.93 ? CBC HEM 201 AAA 1 HETATM 29 C C1D HEM . . . E 3 -18.678 -28.523 20.465 1 44.39 ? C1D HEM 201 AAA 1 HETATM 30 C C2D HEM . . . E 3 -20.093 -28.361 20.2 1 42.83 ? C2D HEM 201 AAA 1 HETATM 31 C C3D HEM . . . E 3 -20.692 -29.572 20.392 1 49.56 ? C3D HEM 201 AAA 1 HETATM 32 C C4D HEM . . . E 3 -19.594 -30.475 20.779 1 48.67 ? C4D HEM 201 AAA 1 HETATM 33 C CMD HEM . . . E 3 -20.693 -27.074 19.761 1 42.68 ? CMD HEM 201 AAA 1 HETATM 34 C CAD HEM . . . E 3 -22.165 -29.976 20.24 1 50.08 ? CAD HEM 201 AAA 1 HETATM 35 C CBD HEM . . . E 3 -22.967 -29.674 21.519 1 53.92 ? CBD HEM 201 AAA 1 HETATM 36 C CGD HEM . . . E 3 -24.424 -30.024 21.419 1 50.75 ? CGD HEM 201 AAA 1 HETATM 37 O O1D HEM . . . E 3 -24.935 -30.722 22.321 1 50.27 ? O1D HEM 201 AAA 1 HETATM 38 O O2D HEM . . . E 3 -25.09 -29.598 20.452 1 46.01 ? O2D HEM 201 AAA 1 HETATM 39 N NA HEM . . . E 3 -17.474 -32.325 21.741 1 45.79 ? NA HEM 201 AAA 1 HETATM 40 N NB HEM . . . E 3 -14.834 -31.324 21.767 1 44.49 ? NB HEM 201 AAA 1 HETATM 41 N NC HEM . . . E 3 -15.727 -28.765 20.731 1 47.33 ? NC HEM 201 AAA 1 HETATM 42 N ND HEM . . . E 3 -18.41 -29.796 20.8 1 47.8 ? ND HEM 201 AAA 1 HETATM 43 FE FE HEM . . . E 3 -16.709 -30.537 21.247 1 52.63 ? FE HEM 201 AAA 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #