data_7AFS
#
_model_server_result.job_id            N1I5WRRDCgh2knbSjnnceg 
_model_server_result.datetime_utc      '2024-11-05 01:20:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7afs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7AFS 
#
_exptl.entry_id    7AFS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         82.89 
_cell.angle_beta          76.43 
_cell.angle_gamma         86.38 
_cell.entry_id            7AFS 
_cell.length_a            35.909 
_cell.length_b            48.062 
_cell.length_c            48.207 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AFS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 34 A HIS 33 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc2 A ND1 HIS 36 A HIS 35 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc3 A NE2 HIS 116 A HIS 115 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc4 A OD2 ASP 137 A ASP 136 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc5 A ND1 HIS 229 A HIS 228 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc6 A ND1 HIS 255 A HIS 254 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc7 A SG CYS 257 A CYS 256 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc8 A SG CYS 273 A CYS 272 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc9 B NI NI . A NI 401 1_555 G O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc10 B NI NI . A NI 401 1_555 G O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7AFS 
_atom_sites.fract_transf_matrix[1][1]    0.027848 
_atom_sites.fract_transf_matrix[1][2]    -0.001764 
_atom_sites.fract_transf_matrix[1][3]    -0.006567 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020848 
_atom_sites.fract_transf_matrix[2][3]    -0.002354 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021476 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 401 1 NI NI . 
C 3 ZN A 1 402 1 ZN ZN . 
D 4 EDO A 1 403 1 EDO EDO . 
E 4 EDO A 1 404 2 EDO EDO . 
F 4 EDO A 1 405 3 EDO EDO . 
G 5 HOH A 1 501 341 HOH HOH . 
G 5 HOH A 2 502 427 HOH HOH . 
G 5 HOH A 3 503 403 HOH HOH . 
G 5 HOH A 4 504 440 HOH HOH . 
G 5 HOH A 5 505 358 HOH HOH . 
G 5 HOH A 6 506 345 HOH HOH . 
G 5 HOH A 7 507 408 HOH HOH . 
G 5 HOH A 8 508 435 HOH HOH . 
G 5 HOH A 9 509 387 HOH HOH . 
G 5 HOH A 10 510 448 HOH HOH . 
G 5 HOH A 11 511 411 HOH HOH . 
G 5 HOH A 12 512 396 HOH HOH . 
G 5 HOH A 13 513 38 HOH HOH . 
G 5 HOH A 14 514 360 HOH HOH . 
G 5 HOH A 15 515 453 HOH HOH . 
G 5 HOH A 16 516 47 HOH HOH . 
G 5 HOH A 17 517 378 HOH HOH . 
G 5 HOH A 18 518 23 HOH HOH . 
G 5 HOH A 19 519 421 HOH HOH . 
G 5 HOH A 20 520 338 HOH HOH . 
G 5 HOH A 21 521 400 HOH HOH . 
G 5 HOH A 22 522 379 HOH HOH . 
G 5 HOH A 23 523 148 HOH HOH . 
G 5 HOH A 24 524 437 HOH HOH . 
G 5 HOH A 25 525 439 HOH HOH . 
G 5 HOH A 26 526 348 HOH HOH . 
G 5 HOH A 27 527 17 HOH HOH . 
G 5 HOH A 28 528 4 HOH HOH . 
G 5 HOH A 29 529 441 HOH HOH . 
G 5 HOH A 30 530 25 HOH HOH . 
G 5 HOH A 31 531 449 HOH HOH . 
G 5 HOH A 32 532 452 HOH HOH . 
G 5 HOH A 33 533 350 HOH HOH . 
G 5 HOH A 34 534 423 HOH HOH . 
G 5 HOH A 35 535 344 HOH HOH . 
G 5 HOH A 36 536 410 HOH HOH . 
G 5 HOH A 37 537 470 HOH HOH . 
G 5 HOH A 38 538 374 HOH HOH . 
G 5 HOH A 39 539 362 HOH HOH . 
G 5 HOH A 40 540 22 HOH HOH . 
G 5 HOH A 41 541 12 HOH HOH . 
G 5 HOH A 42 542 46 HOH HOH . 
G 5 HOH A 43 543 389 HOH HOH . 
G 5 HOH A 44 544 398 HOH HOH . 
G 5 HOH A 45 545 376 HOH HOH . 
G 5 HOH A 46 546 41 HOH HOH . 
G 5 HOH A 47 547 401 HOH HOH . 
G 5 HOH A 48 548 455 HOH HOH . 
G 5 HOH A 49 549 381 HOH HOH . 
G 5 HOH A 50 550 407 HOH HOH . 
G 5 HOH A 51 551 356 HOH HOH . 
G 5 HOH A 52 552 367 HOH HOH . 
G 5 HOH A 53 553 351 HOH HOH . 
G 5 HOH A 54 554 336 HOH HOH . 
G 5 HOH A 55 555 51 HOH HOH . 
G 5 HOH A 56 556 405 HOH HOH . 
G 5 HOH A 57 557 371 HOH HOH . 
G 5 HOH A 58 558 357 HOH HOH . 
G 5 HOH A 59 559 361 HOH HOH . 
G 5 HOH A 60 560 1 HOH HOH . 
G 5 HOH A 61 561 7 HOH HOH . 
G 5 HOH A 62 562 417 HOH HOH . 
G 5 HOH A 63 563 353 HOH HOH . 
G 5 HOH A 64 564 365 HOH HOH . 
G 5 HOH A 65 565 346 HOH HOH . 
G 5 HOH A 66 566 2 HOH HOH . 
G 5 HOH A 67 567 459 HOH HOH . 
G 5 HOH A 68 568 442 HOH HOH . 
G 5 HOH A 69 569 451 HOH HOH . 
G 5 HOH A 70 570 366 HOH HOH . 
G 5 HOH A 71 571 383 HOH HOH . 
G 5 HOH A 72 572 428 HOH HOH . 
G 5 HOH A 73 573 342 HOH HOH . 
G 5 HOH A 74 574 397 HOH HOH . 
G 5 HOH A 75 575 450 HOH HOH . 
G 5 HOH A 76 576 39 HOH HOH . 
G 5 HOH A 77 577 369 HOH HOH . 
G 5 HOH A 78 578 5 HOH HOH . 
G 5 HOH A 79 579 364 HOH HOH . 
G 5 HOH A 80 580 20 HOH HOH . 
G 5 HOH A 81 581 368 HOH HOH . 
G 5 HOH A 82 582 386 HOH HOH . 
G 5 HOH A 83 583 406 HOH HOH . 
G 5 HOH A 84 584 42 HOH HOH . 
G 5 HOH A 85 585 432 HOH HOH . 
G 5 HOH A 86 586 60 HOH HOH . 
G 5 HOH A 87 587 443 HOH HOH . 
G 5 HOH A 88 588 393 HOH HOH . 
G 5 HOH A 89 589 97 HOH HOH . 
G 5 HOH A 90 590 431 HOH HOH . 
G 5 HOH A 91 591 355 HOH HOH . 
G 5 HOH A 92 592 458 HOH HOH . 
G 5 HOH A 93 593 467 HOH HOH . 
G 5 HOH A 94 594 354 HOH HOH . 
G 5 HOH A 95 595 429 HOH HOH . 
G 5 HOH A 96 596 424 HOH HOH . 
G 5 HOH A 97 597 456 HOH HOH . 
G 5 HOH A 98 598 370 HOH HOH . 
G 5 HOH A 99 599 426 HOH HOH . 
G 5 HOH A 100 600 433 HOH HOH . 
G 5 HOH A 101 601 343 HOH HOH . 
G 5 HOH A 102 602 399 HOH HOH . 
G 5 HOH A 103 603 446 HOH HOH . 
G 5 HOH A 104 604 18 HOH HOH . 
G 5 HOH A 105 605 29 HOH HOH . 
G 5 HOH A 106 606 359 HOH HOH . 
G 5 HOH A 107 607 447 HOH HOH . 
G 5 HOH A 108 608 395 HOH HOH . 
G 5 HOH A 109 609 49 HOH HOH . 
G 5 HOH A 110 610 340 HOH HOH . 
G 5 HOH A 111 611 349 HOH HOH . 
G 5 HOH A 112 612 391 HOH HOH . 
G 5 HOH A 113 613 382 HOH HOH . 
G 5 HOH A 114 614 419 HOH HOH . 
G 5 HOH A 115 615 335 HOH HOH . 
G 5 HOH A 116 616 71 HOH HOH . 
G 5 HOH A 117 617 377 HOH HOH . 
G 5 HOH A 118 618 363 HOH HOH . 
G 5 HOH A 119 619 414 HOH HOH . 
G 5 HOH A 120 620 412 HOH HOH . 
G 5 HOH A 121 621 418 HOH HOH . 
G 5 HOH A 122 622 420 HOH HOH . 
G 5 HOH A 123 623 416 HOH HOH . 
G 5 HOH A 124 624 415 HOH HOH . 
G 5 HOH A 125 625 390 HOH HOH . 
G 5 HOH A 126 626 352 HOH HOH . 
G 5 HOH A 127 627 11 HOH HOH . 
G 5 HOH A 128 628 375 HOH HOH . 
G 5 HOH A 129 629 444 HOH HOH . 
G 5 HOH A 130 630 27 HOH HOH . 
G 5 HOH A 131 631 409 HOH HOH . 
G 5 HOH A 132 632 430 HOH HOH . 
G 5 HOH A 133 633 26 HOH HOH . 
G 5 HOH A 134 634 388 HOH HOH . 
G 5 HOH A 135 635 392 HOH HOH . 
G 5 HOH A 136 636 404 HOH HOH . 
G 5 HOH A 137 637 337 HOH HOH . 
G 5 HOH A 138 638 339 HOH HOH . 
G 5 HOH A 139 639 347 HOH HOH . 
G 5 HOH A 140 640 422 HOH HOH . 
G 5 HOH A 141 641 372 HOH HOH . 
G 5 HOH A 142 642 385 HOH HOH . 
G 5 HOH A 143 643 425 HOH HOH . 
G 5 HOH A 144 644 380 HOH HOH . 
G 5 HOH A 145 645 3 HOH HOH . 
G 5 HOH A 146 646 463 HOH HOH . 
G 5 HOH A 147 647 31 HOH HOH . 
G 5 HOH A 148 648 394 HOH HOH . 
G 5 HOH A 149 649 465 HOH HOH . 
G 5 HOH A 150 650 438 HOH HOH . 
G 5 HOH A 151 651 402 HOH HOH . 
G 5 HOH A 152 652 445 HOH HOH . 
G 5 HOH A 153 653 332 HOH HOH . 
G 5 HOH A 154 654 461 HOH HOH . 
G 5 HOH A 155 655 469 HOH HOH . 
G 5 HOH A 156 656 464 HOH HOH . 
G 5 HOH A 157 657 436 HOH HOH . 
G 5 HOH A 158 658 373 HOH HOH . 
G 5 HOH A 159 659 466 HOH HOH . 
G 5 HOH A 160 660 468 HOH HOH . 
G 5 HOH A 161 661 139 HOH HOH . 
G 5 HOH A 162 662 462 HOH HOH . 
G 5 HOH A 163 663 434 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -9.711 
_atom_site.Cartn_y               22.188 
_atom_site.Cartn_z               3.833 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        19.96 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#