data_7AFU # _model_server_result.job_id jZApENhKqQhRmmPU2CwgXg _model_server_result.datetime_utc '2024-11-22 16:46:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7afu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7AFU # _exptl.entry_id 7AFU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 82.51 _cell.angle_beta 75.94 _cell.angle_gamma 87.73 _cell.entry_id 7AFU _cell.length_a 35.966 _cell.length_b 47.897 _cell.length_c 48.373 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AFU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 229 A HIS 228 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc2 A ND1 HIS 255 A HIS 254 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc3 A SG CYS 257 A CYS 256 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 A SG CYS 273 A CYS 272 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7AFU _atom_sites.fract_transf_matrix[1][1] 0.027804 _atom_sites.fract_transf_matrix[1][2] -0.001103 _atom_sites.fract_transf_matrix[1][3] -0.006881 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020895 _atom_sites.fract_transf_matrix[2][3] -0.002623 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 3 EDO A 1 404 3 EDO EDO . F 3 EDO A 1 405 4 EDO EDO . G 3 EDO A 1 406 5 EDO EDO . H 3 EDO A 1 407 6 EDO EDO . I 3 EDO A 1 408 7 EDO EDO . J 3 EDO A 1 409 8 EDO EDO . K 3 EDO A 1 410 9 EDO EDO . L 3 EDO A 1 411 10 EDO EDO . M 3 EDO A 1 412 12 EDO EDO . N 4 HOH A 1 501 238 HOH HOH . N 4 HOH A 2 502 174 HOH HOH . N 4 HOH A 3 503 220 HOH HOH . N 4 HOH A 4 504 114 HOH HOH . N 4 HOH A 5 505 64 HOH HOH . N 4 HOH A 6 506 135 HOH HOH . N 4 HOH A 7 507 131 HOH HOH . N 4 HOH A 8 508 52 HOH HOH . N 4 HOH A 9 509 250 HOH HOH . N 4 HOH A 10 510 229 HOH HOH . N 4 HOH A 11 511 104 HOH HOH . N 4 HOH A 12 512 177 HOH HOH . N 4 HOH A 13 513 38 HOH HOH . N 4 HOH A 14 514 54 HOH HOH . N 4 HOH A 15 515 287 HOH HOH . N 4 HOH A 16 516 60 HOH HOH . N 4 HOH A 17 517 183 HOH HOH . N 4 HOH A 18 518 11 HOH HOH . N 4 HOH A 19 519 163 HOH HOH . N 4 HOH A 20 520 243 HOH HOH . N 4 HOH A 21 521 61 HOH HOH . N 4 HOH A 22 522 125 HOH HOH . N 4 HOH A 23 523 184 HOH HOH . N 4 HOH A 24 524 291 HOH HOH . N 4 HOH A 25 525 249 HOH HOH . N 4 HOH A 26 526 210 HOH HOH . N 4 HOH A 27 527 10 HOH HOH . N 4 HOH A 28 528 202 HOH HOH . N 4 HOH A 29 529 3 HOH HOH . N 4 HOH A 30 530 106 HOH HOH . N 4 HOH A 31 531 75 HOH HOH . N 4 HOH A 32 532 267 HOH HOH . N 4 HOH A 33 533 44 HOH HOH . N 4 HOH A 34 534 292 HOH HOH . N 4 HOH A 35 535 59 HOH HOH . N 4 HOH A 36 536 130 HOH HOH . N 4 HOH A 37 537 103 HOH HOH . N 4 HOH A 38 538 25 HOH HOH . N 4 HOH A 39 539 271 HOH HOH . N 4 HOH A 40 540 236 HOH HOH . N 4 HOH A 41 541 33 HOH HOH . N 4 HOH A 42 542 109 HOH HOH . N 4 HOH A 43 543 9 HOH HOH . N 4 HOH A 44 544 14 HOH HOH . N 4 HOH A 45 545 68 HOH HOH . N 4 HOH A 46 546 90 HOH HOH . N 4 HOH A 47 547 139 HOH HOH . N 4 HOH A 48 548 182 HOH HOH . N 4 HOH A 49 549 85 HOH HOH . N 4 HOH A 50 550 186 HOH HOH . N 4 HOH A 51 551 69 HOH HOH . N 4 HOH A 52 552 207 HOH HOH . N 4 HOH A 53 553 108 HOH HOH . N 4 HOH A 54 554 284 HOH HOH . N 4 HOH A 55 555 31 HOH HOH . N 4 HOH A 56 556 234 HOH HOH . N 4 HOH A 57 557 96 HOH HOH . N 4 HOH A 58 558 245 HOH HOH . N 4 HOH A 59 559 105 HOH HOH . N 4 HOH A 60 560 21 HOH HOH . N 4 HOH A 61 561 51 HOH HOH . N 4 HOH A 62 562 203 HOH HOH . N 4 HOH A 63 563 23 HOH HOH . N 4 HOH A 64 564 57 HOH HOH . N 4 HOH A 65 565 110 HOH HOH . N 4 HOH A 66 566 41 HOH HOH . N 4 HOH A 67 567 117 HOH HOH . N 4 HOH A 68 568 160 HOH HOH . N 4 HOH A 69 569 1 HOH HOH . N 4 HOH A 70 570 28 HOH HOH . N 4 HOH A 71 571 47 HOH HOH . N 4 HOH A 72 572 4 HOH HOH . N 4 HOH A 73 573 257 HOH HOH . N 4 HOH A 74 574 26 HOH HOH . N 4 HOH A 75 575 46 HOH HOH . N 4 HOH A 76 576 215 HOH HOH . N 4 HOH A 77 577 206 HOH HOH . N 4 HOH A 78 578 98 HOH HOH . N 4 HOH A 79 579 290 HOH HOH . N 4 HOH A 80 580 159 HOH HOH . N 4 HOH A 81 581 55 HOH HOH . N 4 HOH A 82 582 194 HOH HOH . N 4 HOH A 83 583 223 HOH HOH . N 4 HOH A 84 584 275 HOH HOH . N 4 HOH A 85 585 39 HOH HOH . N 4 HOH A 86 586 269 HOH HOH . N 4 HOH A 87 587 282 HOH HOH . N 4 HOH A 88 588 189 HOH HOH . N 4 HOH A 89 589 12 HOH HOH . N 4 HOH A 90 590 165 HOH HOH . N 4 HOH A 91 591 45 HOH HOH . N 4 HOH A 92 592 29 HOH HOH . N 4 HOH A 93 593 144 HOH HOH . N 4 HOH A 94 594 251 HOH HOH . N 4 HOH A 95 595 32 HOH HOH . N 4 HOH A 96 596 197 HOH HOH . N 4 HOH A 97 597 19 HOH HOH . N 4 HOH A 98 598 66 HOH HOH . N 4 HOH A 99 599 252 HOH HOH . N 4 HOH A 100 600 134 HOH HOH . N 4 HOH A 101 601 266 HOH HOH . N 4 HOH A 102 602 263 HOH HOH . N 4 HOH A 103 603 83 HOH HOH . N 4 HOH A 104 604 73 HOH HOH . N 4 HOH A 105 605 6 HOH HOH . N 4 HOH A 106 606 20 HOH HOH . N 4 HOH A 107 607 113 HOH HOH . N 4 HOH A 108 608 76 HOH HOH . N 4 HOH A 109 609 43 HOH HOH . N 4 HOH A 110 610 82 HOH HOH . N 4 HOH A 111 611 246 HOH HOH . N 4 HOH A 112 612 107 HOH HOH . N 4 HOH A 113 613 7 HOH HOH . N 4 HOH A 114 614 116 HOH HOH . N 4 HOH A 115 615 15 HOH HOH . N 4 HOH A 116 616 70 HOH HOH . N 4 HOH A 117 617 94 HOH HOH . N 4 HOH A 118 618 77 HOH HOH . N 4 HOH A 119 619 2 HOH HOH . N 4 HOH A 120 620 79 HOH HOH . N 4 HOH A 121 621 191 HOH HOH . N 4 HOH A 122 622 34 HOH HOH . N 4 HOH A 123 623 101 HOH HOH . N 4 HOH A 124 624 121 HOH HOH . N 4 HOH A 125 625 173 HOH HOH . N 4 HOH A 126 626 281 HOH HOH . N 4 HOH A 127 627 179 HOH HOH . N 4 HOH A 128 628 168 HOH HOH . N 4 HOH A 129 629 56 HOH HOH . N 4 HOH A 130 630 81 HOH HOH . N 4 HOH A 131 631 283 HOH HOH . N 4 HOH A 132 632 48 HOH HOH . N 4 HOH A 133 633 80 HOH HOH . N 4 HOH A 134 634 30 HOH HOH . N 4 HOH A 135 635 185 HOH HOH . N 4 HOH A 136 636 143 HOH HOH . N 4 HOH A 137 637 216 HOH HOH . N 4 HOH A 138 638 67 HOH HOH . N 4 HOH A 139 639 17 HOH HOH . N 4 HOH A 140 640 200 HOH HOH . N 4 HOH A 141 641 100 HOH HOH . N 4 HOH A 142 642 259 HOH HOH . N 4 HOH A 143 643 187 HOH HOH . N 4 HOH A 144 644 74 HOH HOH . N 4 HOH A 145 645 27 HOH HOH . N 4 HOH A 146 646 18 HOH HOH . N 4 HOH A 147 647 88 HOH HOH . N 4 HOH A 148 648 22 HOH HOH . N 4 HOH A 149 649 181 HOH HOH . N 4 HOH A 150 650 50 HOH HOH . N 4 HOH A 151 651 63 HOH HOH . N 4 HOH A 152 652 225 HOH HOH . N 4 HOH A 153 653 213 HOH HOH . N 4 HOH A 154 654 145 HOH HOH . N 4 HOH A 155 655 86 HOH HOH . N 4 HOH A 156 656 89 HOH HOH . N 4 HOH A 157 657 270 HOH HOH . N 4 HOH A 158 658 42 HOH HOH . N 4 HOH A 159 659 123 HOH HOH . N 4 HOH A 160 660 13 HOH HOH . N 4 HOH A 161 661 272 HOH HOH . N 4 HOH A 162 662 99 HOH HOH . N 4 HOH A 163 663 126 HOH HOH . N 4 HOH A 164 664 193 HOH HOH . N 4 HOH A 165 665 178 HOH HOH . N 4 HOH A 166 666 264 HOH HOH . N 4 HOH A 167 667 151 HOH HOH . N 4 HOH A 168 668 180 HOH HOH . N 4 HOH A 169 669 260 HOH HOH . N 4 HOH A 170 670 230 HOH HOH . N 4 HOH A 171 671 136 HOH HOH . N 4 HOH A 172 672 111 HOH HOH . N 4 HOH A 173 673 71 HOH HOH . N 4 HOH A 174 674 188 HOH HOH . N 4 HOH A 175 675 36 HOH HOH . N 4 HOH A 176 676 172 HOH HOH . N 4 HOH A 177 677 155 HOH HOH . N 4 HOH A 178 678 115 HOH HOH . N 4 HOH A 179 679 146 HOH HOH . N 4 HOH A 180 680 138 HOH HOH . N 4 HOH A 181 681 120 HOH HOH . N 4 HOH A 182 682 265 HOH HOH . N 4 HOH A 183 683 157 HOH HOH . N 4 HOH A 184 684 112 HOH HOH . N 4 HOH A 185 685 78 HOH HOH . N 4 HOH A 186 686 233 HOH HOH . N 4 HOH A 187 687 49 HOH HOH . N 4 HOH A 188 688 152 HOH HOH . N 4 HOH A 189 689 235 HOH HOH . N 4 HOH A 190 690 97 HOH HOH . N 4 HOH A 191 691 169 HOH HOH . N 4 HOH A 192 692 132 HOH HOH . N 4 HOH A 193 693 288 HOH HOH . N 4 HOH A 194 694 62 HOH HOH . N 4 HOH A 195 695 149 HOH HOH . N 4 HOH A 196 696 93 HOH HOH . N 4 HOH A 197 697 158 HOH HOH . N 4 HOH A 198 698 161 HOH HOH . N 4 HOH A 199 699 37 HOH HOH . N 4 HOH A 200 700 124 HOH HOH . N 4 HOH A 201 701 278 HOH HOH . N 4 HOH A 202 702 254 HOH HOH . N 4 HOH A 203 703 129 HOH HOH . N 4 HOH A 204 704 190 HOH HOH . N 4 HOH A 205 705 289 HOH HOH . N 4 HOH A 206 706 40 HOH HOH . N 4 HOH A 207 707 119 HOH HOH . N 4 HOH A 208 708 162 HOH HOH . N 4 HOH A 209 709 261 HOH HOH . N 4 HOH A 210 710 16 HOH HOH . N 4 HOH A 211 711 171 HOH HOH . N 4 HOH A 212 712 231 HOH HOH . N 4 HOH A 213 713 227 HOH HOH . N 4 HOH A 214 714 241 HOH HOH . N 4 HOH A 215 715 214 HOH HOH . N 4 HOH A 216 716 253 HOH HOH . N 4 HOH A 217 717 65 HOH HOH . N 4 HOH A 218 718 170 HOH HOH . N 4 HOH A 219 719 228 HOH HOH . N 4 HOH A 220 720 198 HOH HOH . N 4 HOH A 221 721 175 HOH HOH . N 4 HOH A 222 722 279 HOH HOH . N 4 HOH A 223 723 226 HOH HOH . N 4 HOH A 224 724 247 HOH HOH . N 4 HOH A 225 725 224 HOH HOH . N 4 HOH A 226 726 248 HOH HOH . N 4 HOH A 227 727 244 HOH HOH . N 4 HOH A 228 728 148 HOH HOH . N 4 HOH A 229 729 277 HOH HOH . N 4 HOH A 230 730 204 HOH HOH . N 4 HOH A 231 731 280 HOH HOH . N 4 HOH A 232 732 211 HOH HOH . N 4 HOH A 233 733 195 HOH HOH . N 4 HOH A 234 734 58 HOH HOH . N 4 HOH A 235 735 217 HOH HOH . N 4 HOH A 236 736 84 HOH HOH . N 4 HOH A 237 737 237 HOH HOH . N 4 HOH A 238 738 262 HOH HOH . N 4 HOH A 239 739 91 HOH HOH . N 4 HOH A 240 740 122 HOH HOH . N 4 HOH A 241 741 221 HOH HOH . N 4 HOH A 242 742 199 HOH HOH . N 4 HOH A 243 743 255 HOH HOH . N 4 HOH A 244 744 128 HOH HOH . N 4 HOH A 245 745 276 HOH HOH . N 4 HOH A 246 746 95 HOH HOH . N 4 HOH A 247 747 258 HOH HOH . N 4 HOH A 248 748 274 HOH HOH . N 4 HOH A 249 749 141 HOH HOH . N 4 HOH A 250 750 5 HOH HOH . N 4 HOH A 251 751 232 HOH HOH . N 4 HOH A 252 752 212 HOH HOH . N 4 HOH A 253 753 87 HOH HOH . N 4 HOH A 254 754 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -5.995 40.091 -18.934 1 19.54 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . E 3 -6.081 41.183 -18.015 1 20.16 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . E 3 -6.604 38.833 -18.319 1 19.35 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . E 3 -5.794 38.346 -17.231 1 18.73 ? O2 EDO 404 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #