data_7AG5 # _model_server_result.job_id bLI3R9FfUmndNuLSPbwP9g _model_server_result.datetime_utc '2024-10-20 20:42:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ag5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 7AG5 # _exptl.entry_id 7AG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AG5 _cell.length_a 40.428 _cell.length_b 40.428 _cell.length_c 31.033 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 1 A ASP 1 1_555 A N DNP 2 A DNP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A N ASP 1 A ASP 1 1_555 E C 9GE . A 9GE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 A C DNP 2 A DNP 2 1_555 A N CPI 3 A CPI 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale4 A NG DNP 2 A DNP 2 1_555 A C PRO 11 A PRO 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C CPI 3 A CPI 3 1_555 A N ASP 4 A ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale6 A C GLY 8 A GLY 8 1_555 A N 2RA 9 A 2RA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale7 A C 2RA 9 A 2RA 9 1_555 A N ILE 10 A ILE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A OD1 ASP 1 A ASP 1 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc2 A O DNP 2 A DNP 2 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc3 A OD2 ASP 4 A ASP 4 1_555 C CA CA . A CA 102 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A OD1 ASP 5 A ASP 5 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 A O GLY 6 A GLY 6 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 A OD1 ASP 7 A ASP 7 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc7 A O GLY 8 A GLY 8 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc8 A O ILE 10 A ILE 10 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 B CA CA . A CA 101 1_555 D O3 RDZ . A RDZ 103 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.264 ? metalc ? metalc10 B CA CA . A CA 101 1_555 D O3 RDZ . A RDZ 103 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.289 ? metalc ? metalc11 C CA CA . A CA 102 1_555 D O2 RDZ . A RDZ 103 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.288 ? metalc ? metalc12 C CA CA . A CA 102 1_555 D O2 RDZ . A RDZ 103 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.218 ? metalc ? metalc13 C CA CA . A CA 102 1_555 E O 9GE . A 9GE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc14 C CA CA . A CA 102 1_555 F O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7AG5 _atom_sites.fract_transf_matrix[1][1] 0.024735 _atom_sites.fract_transf_matrix[1][2] 0.014281 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.032224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 102 CA CA . C 2 CA A 1 102 103 CA CA . D 3 RDZ A 1 103 201 RDZ UNL . E 4 9GE A 1 104 0 9GE 9GE . F 5 HOH A 1 201 19 HOH HOH . F 5 HOH A 2 202 11 HOH HOH . F 5 HOH A 3 203 8 HOH HOH . F 5 HOH A 4 204 4 HOH HOH . F 5 HOH A 5 205 6 HOH HOH . F 5 HOH A 6 206 15 HOH HOH . F 5 HOH A 7 207 17 HOH HOH . F 5 HOH A 8 208 14 HOH HOH . F 5 HOH A 9 209 2 HOH HOH . F 5 HOH A 10 210 3 HOH HOH . F 5 HOH A 11 211 5 HOH HOH . F 5 HOH A 12 212 1 HOH HOH . F 5 HOH A 13 213 9 HOH HOH . F 5 HOH A 14 214 16 HOH HOH . F 5 HOH A 15 215 18 HOH HOH . F 5 HOH A 16 216 22 HOH HOH . F 5 HOH A 17 217 20 HOH HOH . F 5 HOH A 18 218 7 HOH HOH . F 5 HOH A 19 219 13 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -9.512 _atom_site.Cartn_y 13.342 _atom_site.Cartn_z 9.279 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 8.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #