data_7AG6 # _model_server_result.job_id RqZCSeLfjNsAYieEWAh_qg _model_server_result.datetime_utc '2025-01-08 10:48:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ag6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7AG6 # _exptl.entry_id 7AG6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.22 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-deoxy-6-sulfo-D-fructose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AG6 _cell.length_a 94.88 _cell.length_b 94.88 _cell.length_c 167.43 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O1A ADP . A ADP 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc2 E MG MG . A MG 403 1_555 I O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 E MG MG . A MG 403 1_555 I O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc4 E MG MG . A MG 403 1_555 I O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc5 E MG MG . A MG 403 1_555 I O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 E MG MG . A MG 403 1_555 I O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc7 F O2A ADP . B ADP 401 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc8 H MG MG . B MG 403 1_555 J O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc9 H MG MG . B MG 403 1_555 J O HOH . B HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 H MG MG . B MG 403 1_555 J O HOH . B HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc11 H MG MG . B MG 403 1_555 J O HOH . B HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc12 H MG MG . B MG 403 1_555 J O HOH . B HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? # _chem_comp.formula 'C6 H12 O8 S' _chem_comp.formula_weight 244.22 _chem_comp.id RB8 _chem_comp.mon_nstd_flag . _chem_comp.name 6-deoxy-6-sulfo-D-fructose _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(2~{S},3~{S},4~{S},5~{R})-5-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxolan-2-yl]methanesulfonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C6 RB8 sing 321 n n O3 S1 RB8 doub 322 n n C1 S1 RB8 sing 323 n n C1 C2 RB8 sing 324 n n O1 S1 RB8 doub 325 n n C6 C2 RB8 sing 326 n n C6 C5 RB8 sing 327 n n S1 O2 RB8 sing 328 n n C2 O4 RB8 sing 329 n n C5 O7 RB8 sing 330 n n C5 C3 RB8 sing 331 n n O4 C3 RB8 sing 332 n n C3 O5 RB8 sing 333 n n C3 C4 RB8 sing 334 n n C4 O6 RB8 sing 335 n n C1 H1 RB8 sing 336 n n C1 H2 RB8 sing 337 n n C2 H3 RB8 sing 338 n n O5 H4 RB8 sing 339 n n C4 H5 RB8 sing 340 n n C4 H6 RB8 sing 341 n n O6 H7 RB8 sing 342 n n C5 H8 RB8 sing 343 n n O7 H9 RB8 sing 344 n n C6 H10 RB8 sing 345 n n O8 H11 RB8 sing 346 n n O2 H12 RB8 sing 347 n n # _atom_sites.entry_id 7AG6 _atom_sites.fract_transf_matrix[1][1] 0.01054 _atom_sites.fract_transf_matrix[1][2] 0.006085 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 401 401 ADP ADP . D 3 RB8 A 1 402 501 RB8 SF . E 4 MG A 1 403 2 MG MG . F 2 ADP B 1 401 301 ADP ADP . G 3 RB8 B 1 402 401 RB8 SF . H 4 MG B 1 403 1 MG MG . I 5 HOH A 1 501 287 HOH HOH . I 5 HOH A 2 502 302 HOH HOH . I 5 HOH A 3 503 304 HOH HOH . I 5 HOH A 4 504 69 HOH HOH . I 5 HOH A 5 505 67 HOH HOH . I 5 HOH A 6 506 23 HOH HOH . I 5 HOH A 7 507 40 HOH HOH . I 5 HOH A 8 508 152 HOH HOH . I 5 HOH A 9 509 21 HOH HOH . I 5 HOH A 10 510 86 HOH HOH . I 5 HOH A 11 511 107 HOH HOH . I 5 HOH A 12 512 180 HOH HOH . I 5 HOH A 13 513 43 HOH HOH . I 5 HOH A 14 514 286 HOH HOH . I 5 HOH A 15 515 25 HOH HOH . I 5 HOH A 16 516 45 HOH HOH . I 5 HOH A 17 517 117 HOH HOH . I 5 HOH A 18 518 48 HOH HOH . I 5 HOH A 19 519 139 HOH HOH . I 5 HOH A 20 520 26 HOH HOH . I 5 HOH A 21 521 52 HOH HOH . I 5 HOH A 22 522 31 HOH HOH . I 5 HOH A 23 523 46 HOH HOH . I 5 HOH A 24 524 290 HOH HOH . I 5 HOH A 25 525 291 HOH HOH . I 5 HOH A 26 526 108 HOH HOH . I 5 HOH A 27 527 59 HOH HOH . I 5 HOH A 28 528 285 HOH HOH . I 5 HOH A 29 529 53 HOH HOH . I 5 HOH A 30 530 111 HOH HOH . I 5 HOH A 31 531 123 HOH HOH . I 5 HOH A 32 532 164 HOH HOH . I 5 HOH A 33 533 37 HOH HOH . I 5 HOH A 34 534 76 HOH HOH . I 5 HOH A 35 535 8 HOH HOH . I 5 HOH A 36 536 71 HOH HOH . I 5 HOH A 37 537 22 HOH HOH . I 5 HOH A 38 538 301 HOH HOH . I 5 HOH A 39 539 133 HOH HOH . I 5 HOH A 40 540 84 HOH HOH . I 5 HOH A 41 541 32 HOH HOH . I 5 HOH A 42 542 81 HOH HOH . I 5 HOH A 43 543 79 HOH HOH . I 5 HOH A 44 544 306 HOH HOH . I 5 HOH A 45 545 162 HOH HOH . I 5 HOH A 46 546 14 HOH HOH . I 5 HOH A 47 547 128 HOH HOH . I 5 HOH A 48 548 171 HOH HOH . I 5 HOH A 49 549 95 HOH HOH . I 5 HOH A 50 550 68 HOH HOH . I 5 HOH A 51 551 219 HOH HOH . I 5 HOH A 52 552 51 HOH HOH . I 5 HOH A 53 553 303 HOH HOH . I 5 HOH A 54 554 57 HOH HOH . I 5 HOH A 55 555 50 HOH HOH . I 5 HOH A 56 556 217 HOH HOH . I 5 HOH A 57 557 78 HOH HOH . I 5 HOH A 58 558 58 HOH HOH . I 5 HOH A 59 559 305 HOH HOH . I 5 HOH A 60 560 24 HOH HOH . I 5 HOH A 61 561 224 HOH HOH . I 5 HOH A 62 562 35 HOH HOH . I 5 HOH A 63 563 173 HOH HOH . I 5 HOH A 64 564 169 HOH HOH . I 5 HOH A 65 565 146 HOH HOH . I 5 HOH A 66 566 179 HOH HOH . I 5 HOH A 67 567 110 HOH HOH . I 5 HOH A 68 568 201 HOH HOH . I 5 HOH A 69 569 109 HOH HOH . I 5 HOH A 70 570 56 HOH HOH . I 5 HOH A 71 571 170 HOH HOH . I 5 HOH A 72 572 94 HOH HOH . I 5 HOH A 73 573 192 HOH HOH . I 5 HOH A 74 574 47 HOH HOH . I 5 HOH A 75 575 34 HOH HOH . I 5 HOH A 76 576 39 HOH HOH . I 5 HOH A 77 577 44 HOH HOH . I 5 HOH A 78 578 288 HOH HOH . I 5 HOH A 79 579 218 HOH HOH . I 5 HOH A 80 580 96 HOH HOH . I 5 HOH A 81 581 207 HOH HOH . I 5 HOH A 82 582 211 HOH HOH . I 5 HOH A 83 583 199 HOH HOH . I 5 HOH A 84 584 151 HOH HOH . J 5 HOH B 1 501 299 HOH HOH . J 5 HOH B 2 502 148 HOH HOH . J 5 HOH B 3 503 293 HOH HOH . J 5 HOH B 4 504 233 HOH HOH . J 5 HOH B 5 505 115 HOH HOH . J 5 HOH B 6 506 130 HOH HOH . J 5 HOH B 7 507 116 HOH HOH . J 5 HOH B 8 508 20 HOH HOH . J 5 HOH B 9 509 75 HOH HOH . J 5 HOH B 10 510 36 HOH HOH . J 5 HOH B 11 511 174 HOH HOH . J 5 HOH B 12 512 200 HOH HOH . J 5 HOH B 13 513 296 HOH HOH . J 5 HOH B 14 514 122 HOH HOH . J 5 HOH B 15 515 177 HOH HOH . J 5 HOH B 16 516 30 HOH HOH . J 5 HOH B 17 517 65 HOH HOH . J 5 HOH B 18 518 11 HOH HOH . J 5 HOH B 19 519 60 HOH HOH . J 5 HOH B 20 520 295 HOH HOH . J 5 HOH B 21 521 9 HOH HOH . J 5 HOH B 22 522 284 HOH HOH . J 5 HOH B 23 523 298 HOH HOH . J 5 HOH B 24 524 90 HOH HOH . J 5 HOH B 25 525 297 HOH HOH . J 5 HOH B 26 526 294 HOH HOH . J 5 HOH B 27 527 196 HOH HOH . J 5 HOH B 28 528 124 HOH HOH . J 5 HOH B 29 529 140 HOH HOH . J 5 HOH B 30 530 49 HOH HOH . J 5 HOH B 31 531 163 HOH HOH . J 5 HOH B 32 532 54 HOH HOH . J 5 HOH B 33 533 15 HOH HOH . J 5 HOH B 34 534 137 HOH HOH . J 5 HOH B 35 535 212 HOH HOH . J 5 HOH B 36 536 227 HOH HOH . J 5 HOH B 37 537 300 HOH HOH . J 5 HOH B 38 538 178 HOH HOH . J 5 HOH B 39 539 55 HOH HOH . J 5 HOH B 40 540 121 HOH HOH . J 5 HOH B 41 541 29 HOH HOH . J 5 HOH B 42 542 147 HOH HOH . J 5 HOH B 43 543 198 HOH HOH . J 5 HOH B 44 544 292 HOH HOH . J 5 HOH B 45 545 33 HOH HOH . J 5 HOH B 46 546 77 HOH HOH . J 5 HOH B 47 547 66 HOH HOH . J 5 HOH B 48 548 168 HOH HOH . J 5 HOH B 49 549 143 HOH HOH . J 5 HOH B 50 550 145 HOH HOH . J 5 HOH B 51 551 101 HOH HOH . J 5 HOH B 52 552 114 HOH HOH . J 5 HOH B 53 553 63 HOH HOH . J 5 HOH B 54 554 153 HOH HOH . J 5 HOH B 55 555 97 HOH HOH . J 5 HOH B 56 556 223 HOH HOH . J 5 HOH B 57 557 232 HOH HOH . J 5 HOH B 58 558 98 HOH HOH . J 5 HOH B 59 559 136 HOH HOH . J 5 HOH B 60 560 120 HOH HOH . J 5 HOH B 61 561 113 HOH HOH . J 5 HOH B 62 562 61 HOH HOH . J 5 HOH B 63 563 289 HOH HOH . J 5 HOH B 64 564 265 HOH HOH . J 5 HOH B 65 565 272 HOH HOH . J 5 HOH B 66 566 238 HOH HOH . J 5 HOH B 67 567 241 HOH HOH . J 5 HOH B 68 568 187 HOH HOH . J 5 HOH B 69 569 231 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 RB8 . . . D 3 21.022 30.394 -29.096 1 45.27 ? O1 RB8 402 A 1 HETATM 2 S S1 RB8 . . . D 3 22.409 30.379 -28.803 1 47.52 ? S1 RB8 402 A 1 HETATM 3 O O2 RB8 . . . D 3 22.778 30.069 -27.431 1 45.14 ? O2 RB8 402 A 1 HETATM 4 O O3 RB8 . . . D 3 23.155 29.526 -29.778 1 45.99 ? O3 RB8 402 A 1 HETATM 5 C C1 RB8 . . . D 3 23.106 31.963 -29.182 1 42.51 ? C1 RB8 402 A 1 HETATM 6 C C2 RB8 . . . D 3 22.35 33.09 -28.545 1 41.7 ? C2 RB8 402 A 1 HETATM 7 O O4 RB8 . . . D 3 22.426 32.988 -27.107 1 43.61 ? O4 RB8 402 A 1 HETATM 8 C C3 RB8 . . . D 3 22.68 34.271 -26.509 1 47.07 ? C3 RB8 402 A 1 HETATM 9 O O5 RB8 . . . D 3 24.008 34.396 -26.035 1 44.11 ? O5 RB8 402 A 1 HETATM 10 C C4 RB8 . . . D 3 21.628 34.538 -25.419 1 45.12 ? C4 RB8 402 A 1 HETATM 11 O O6 RB8 . . . D 3 21.78 33.685 -24.274 1 44.67 ? O6 RB8 402 A 1 HETATM 12 C C5 RB8 . . . D 3 22.519 35.298 -27.639 1 44.25 ? C5 RB8 402 A 1 HETATM 13 O O7 RB8 . . . D 3 23.233 36.502 -27.403 1 49.3 ? O7 RB8 402 A 1 HETATM 14 C C6 RB8 . . . D 3 22.893 34.477 -28.87 1 45.86 ? C6 RB8 402 A 1 HETATM 15 O O8 RB8 . . . D 3 22.255 34.904 -30.062 1 47.01 ? O8 RB8 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 15 #