data_7AGH
#
_model_server_result.job_id            S9deQ2MA39_YP4pB9WoOsA 
_model_server_result.datetime_utc      '2025-01-08 10:40:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7agh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    7AGH 
#
_exptl.entry_id    7AGH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AGH 
_cell.length_a            82.085 
_cell.length_b            82.224 
_cell.length_c            170.97 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AGH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,K,L,O 1 1 
C,I,J,N 2 1 
B,G,H,M 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_355 -x-3/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 -123.1275 0 85.485 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 162 C ASP 162 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc2 E O1G ANP . C ANP 401 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc3 E O2B ANP . C ANP 401 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc4 B OD2 ASP 162 D ASP 162 1_555 H MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc5 G O2G ANP . D ANP 401 1_555 H MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc6 G O2B ANP . D ANP 401 1_555 H MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc7 I O1A ANP . A ANP 401 1_555 J MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     7AGH 
_atom_sites.fract_transf_matrix[1][1]    0.012182 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012162 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005849 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ANP C 1 401 301 ANP ANP . 
F 3 MG C 1 402 1 MG MG . 
G 2 ANP D 1 401 301 ANP ANP . 
H 3 MG D 1 402 2 MG MG . 
I 2 ANP A 1 401 301 ANP ANP . 
J 3 MG A 1 402 3 MG MG . 
K 2 ANP B 1 401 301 ANP ANP . 
L 4 HOH C 1 501 41 HOH HOH . 
L 4 HOH C 2 502 18 HOH HOH . 
L 4 HOH C 3 503 42 HOH HOH . 
L 4 HOH C 4 504 49 HOH HOH . 
L 4 HOH C 5 505 62 HOH HOH . 
L 4 HOH C 6 506 43 HOH HOH . 
L 4 HOH C 7 507 61 HOH HOH . 
L 4 HOH C 8 508 52 HOH HOH . 
L 4 HOH C 9 509 53 HOH HOH . 
L 4 HOH C 10 510 3 HOH HOH . 
L 4 HOH C 11 511 60 HOH HOH . 
L 4 HOH C 12 512 4 HOH HOH . 
M 4 HOH D 1 501 21 HOH HOH . 
M 4 HOH D 2 502 46 HOH HOH . 
M 4 HOH D 3 503 36 HOH HOH . 
M 4 HOH D 4 504 29 HOH HOH . 
M 4 HOH D 5 505 25 HOH HOH . 
M 4 HOH D 6 506 38 HOH HOH . 
M 4 HOH D 7 507 28 HOH HOH . 
M 4 HOH D 8 508 51 HOH HOH . 
M 4 HOH D 9 509 19 HOH HOH . 
M 4 HOH D 10 510 26 HOH HOH . 
M 4 HOH D 11 511 16 HOH HOH . 
M 4 HOH D 12 512 23 HOH HOH . 
M 4 HOH D 13 513 45 HOH HOH . 
M 4 HOH D 14 514 1 HOH HOH . 
M 4 HOH D 15 515 33 HOH HOH . 
M 4 HOH D 16 516 44 HOH HOH . 
M 4 HOH D 17 517 55 HOH HOH . 
M 4 HOH D 18 518 24 HOH HOH . 
M 4 HOH D 19 519 50 HOH HOH . 
N 4 HOH A 1 501 58 HOH HOH . 
N 4 HOH A 2 502 47 HOH HOH . 
O 4 HOH B 1 501 54 HOH HOH . 
O 4 HOH B 2 502 48 HOH HOH . 
O 4 HOH B 3 503 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . E 2 -28.654 -4.66 70.54 1 50.79 ? PG ANP 401 C 1 
HETATM 2 O O1G ANP . . . E 2 -28.737 -3.149 70.798 1 51.88 ? O1G ANP 401 C 1 
HETATM 3 O O2G ANP . . . E 2 -27.455 -4.886 69.653 1 48.95 ? O2G ANP 401 C 1 
HETATM 4 O O3G ANP . . . E 2 -28.389 -5.4 71.846 1 48.26 ? O3G ANP 401 C 1 
HETATM 5 P PB ANP . . . E 2 -30.84 -4.307 68.629 1 41.87 ? PB ANP 401 C 1 
HETATM 6 O O1B ANP . . . E 2 -32.312 -4.23 68.896 1 42.87 ? O1B ANP 401 C 1 
HETATM 7 O O2B ANP . . . E 2 -30.128 -3.056 68.177 1 50.89 ? O2B ANP 401 C 1 
HETATM 8 N N3B ANP . . . E 2 -30.032 -5.162 69.783 1 45.61 ? N3B ANP 401 C 1 
HETATM 9 P PA ANP . . . E 2 -31.281 -6.503 66.806 1 35.09 ? PA ANP 401 C 1 
HETATM 10 O O1A ANP . . . E 2 -31.558 -7.33 68.031 1 35.75 ? O1A ANP 401 C 1 
HETATM 11 O O2A ANP . . . E 2 -32.419 -6.112 65.918 1 35.21 ? O2A ANP 401 C 1 
HETATM 12 O O3A ANP . . . E 2 -30.659 -5.123 67.291 1 38.06 ? O3A ANP 401 C 1 
HETATM 13 O O5' ANP . . . E 2 -30.066 -7.118 65.943 1 28.2 ? O5' ANP 401 C 1 
HETATM 14 C C5' ANP . . . E 2 -29.569 -6.426 64.77 1 30.2 ? C5' ANP 401 C 1 
HETATM 15 C C4' ANP . . . E 2 -29.392 -7.386 63.615 1 33.33 ? C4' ANP 401 C 1 
HETATM 16 O O4' ANP . . . E 2 -28.512 -8.477 64.004 1 37.43 ? O4' ANP 401 C 1 
HETATM 17 C C3' ANP . . . E 2 -30.662 -8.075 63.109 1 34.62 ? C3' ANP 401 C 1 
HETATM 18 O O3' ANP . . . E 2 -31.288 -7.332 62.075 1 34.95 ? O3' ANP 401 C 1 
HETATM 19 C C2' ANP . . . E 2 -30.125 -9.386 62.539 1 35.3 ? C2' ANP 401 C 1 
HETATM 20 O O2' ANP . . . E 2 -29.789 -9.188 61.183 1 33.96 ? O2' ANP 401 C 1 
HETATM 21 C C1' ANP . . . E 2 -28.969 -9.705 63.491 1 36.58 ? C1' ANP 401 C 1 
HETATM 22 N N9 ANP . . . E 2 -29.349 -10.581 64.622 1 38.12 ? N9 ANP 401 C 1 
HETATM 23 C C8 ANP . . . E 2 -29.634 -10.252 65.922 1 41.18 ? C8 ANP 401 C 1 
HETATM 24 N N7 ANP . . . E 2 -29.962 -11.286 66.666 1 41.83 ? N7 ANP 401 C 1 
HETATM 25 C C5 ANP . . . E 2 -29.887 -12.366 65.797 1 43.78 ? C5 ANP 401 C 1 
HETATM 26 C C6 ANP . . . E 2 -30.117 -13.746 65.962 1 44.41 ? C6 ANP 401 C 1 
HETATM 27 N N6 ANP . . . E 2 -30.486 -14.303 67.11 1 47.87 ? N6 ANP 401 C 1 
HETATM 28 N N1 ANP . . . E 2 -29.956 -14.544 64.879 1 43.09 ? N1 ANP 401 C 1 
HETATM 29 C C2 ANP . . . E 2 -29.573 -13.987 63.725 1 43.41 ? C2 ANP 401 C 1 
HETATM 30 N N3 ANP . . . E 2 -29.335 -12.707 63.449 1 48.11 ? N3 ANP 401 C 1 
HETATM 31 C C4 ANP . . . E 2 -29.51 -11.938 64.542 1 44.37 ? C4 ANP 401 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#