data_7AGH
#
_model_server_result.job_id            3yOph1w7qT_C9dt3V_0pzg 
_model_server_result.datetime_utc      '2025-01-08 10:45:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7agh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":401}' 
#
_entry.id    7AGH 
#
_exptl.entry_id    7AGH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AGH 
_cell.length_a            82.085 
_cell.length_b            82.224 
_cell.length_c            170.97 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AGH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,K,L,O 1 1 
C,I,J,N 2 1 
B,G,H,M 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_355 -x-3/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 -123.1275 0 85.485 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 162 C ASP 162 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc2 E O1G ANP . C ANP 401 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc3 E O2B ANP . C ANP 401 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc4 B OD2 ASP 162 D ASP 162 1_555 H MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc5 G O2G ANP . D ANP 401 1_555 H MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc6 G O2B ANP . D ANP 401 1_555 H MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc7 I O1A ANP . A ANP 401 1_555 J MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     7AGH 
_atom_sites.fract_transf_matrix[1][1]    0.012182 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012162 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005849 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ANP C 1 401 301 ANP ANP . 
F 3 MG C 1 402 1 MG MG . 
G 2 ANP D 1 401 301 ANP ANP . 
H 3 MG D 1 402 2 MG MG . 
I 2 ANP A 1 401 301 ANP ANP . 
J 3 MG A 1 402 3 MG MG . 
K 2 ANP B 1 401 301 ANP ANP . 
L 4 HOH C 1 501 41 HOH HOH . 
L 4 HOH C 2 502 18 HOH HOH . 
L 4 HOH C 3 503 42 HOH HOH . 
L 4 HOH C 4 504 49 HOH HOH . 
L 4 HOH C 5 505 62 HOH HOH . 
L 4 HOH C 6 506 43 HOH HOH . 
L 4 HOH C 7 507 61 HOH HOH . 
L 4 HOH C 8 508 52 HOH HOH . 
L 4 HOH C 9 509 53 HOH HOH . 
L 4 HOH C 10 510 3 HOH HOH . 
L 4 HOH C 11 511 60 HOH HOH . 
L 4 HOH C 12 512 4 HOH HOH . 
M 4 HOH D 1 501 21 HOH HOH . 
M 4 HOH D 2 502 46 HOH HOH . 
M 4 HOH D 3 503 36 HOH HOH . 
M 4 HOH D 4 504 29 HOH HOH . 
M 4 HOH D 5 505 25 HOH HOH . 
M 4 HOH D 6 506 38 HOH HOH . 
M 4 HOH D 7 507 28 HOH HOH . 
M 4 HOH D 8 508 51 HOH HOH . 
M 4 HOH D 9 509 19 HOH HOH . 
M 4 HOH D 10 510 26 HOH HOH . 
M 4 HOH D 11 511 16 HOH HOH . 
M 4 HOH D 12 512 23 HOH HOH . 
M 4 HOH D 13 513 45 HOH HOH . 
M 4 HOH D 14 514 1 HOH HOH . 
M 4 HOH D 15 515 33 HOH HOH . 
M 4 HOH D 16 516 44 HOH HOH . 
M 4 HOH D 17 517 55 HOH HOH . 
M 4 HOH D 18 518 24 HOH HOH . 
M 4 HOH D 19 519 50 HOH HOH . 
N 4 HOH A 1 501 58 HOH HOH . 
N 4 HOH A 2 502 47 HOH HOH . 
O 4 HOH B 1 501 54 HOH HOH . 
O 4 HOH B 2 502 48 HOH HOH . 
O 4 HOH B 3 503 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . I 2 -55.481 -1.212 125.745 1 59.75 ? PG ANP 401 A 1 
HETATM 2 O O1G ANP . . . I 2 -54.816 -2.558 125.678 1 68.39 ? O1G ANP 401 A 1 
HETATM 3 O O2G ANP . . . I 2 -56.03 -1.096 127.155 1 63.97 ? O2G ANP 401 A 1 
HETATM 4 O O3G ANP . . . I 2 -54.435 -0.146 125.534 1 64.29 ? O3G ANP 401 A 1 
HETATM 5 P PB ANP . . . I 2 -56.869 0.093 123.506 1 44.43 ? PB ANP 401 A 1 
HETATM 6 O O1B ANP . . . I 2 -58.281 0.582 123.742 1 37.95 ? O1B ANP 401 A 1 
HETATM 7 O O2B ANP . . . I 2 -55.784 1.101 123.273 1 48.34 ? O2B ANP 401 A 1 
HETATM 8 N N3B ANP . . . I 2 -56.614 -1.121 124.579 1 54.7 ? N3B ANP 401 A 1 
HETATM 9 P PA ANP . . . I 2 -57.52 -1.772 121.49 1 38.41 ? PA ANP 401 A 1 
HETATM 10 O O1A ANP . . . I 2 -58.597 -2.115 122.475 1 43.24 ? O1A ANP 401 A 1 
HETATM 11 O O2A ANP . . . I 2 -57.805 -1.104 120.185 1 35.31 ? O2A ANP 401 A 1 
HETATM 12 O O3A ANP . . . I 2 -56.56 -0.729 122.197 1 38.33 ? O3A ANP 401 A 1 
HETATM 13 O O5' ANP . . . I 2 -56.628 -3.084 121.257 1 34.82 ? O5' ANP 401 A 1 
HETATM 14 C C5' ANP . . . I 2 -55.774 -3.144 120.095 1 35.39 ? C5' ANP 401 A 1 
HETATM 15 C C4' ANP . . . I 2 -56.15 -4.323 119.236 1 36.35 ? C4' ANP 401 A 1 
HETATM 16 O O4' ANP . . . I 2 -56.278 -5.51 120.062 1 37.24 ? O4' ANP 401 A 1 
HETATM 17 C C3' ANP . . . I 2 -57.492 -4.277 118.493 1 37.22 ? C3' ANP 401 A 1 
HETATM 18 O O3' ANP . . . I 2 -57.509 -3.407 117.368 1 36.21 ? O3' ANP 401 A 1 
HETATM 19 C C2' ANP . . . I 2 -57.603 -5.765 118.145 1 36.7 ? C2' ANP 401 A 1 
HETATM 20 O O2' ANP . . . I 2 -56.718 -6.093 117.093 1 34.22 ? O2' ANP 401 A 1 
HETATM 21 C C1' ANP . . . I 2 -57.253 -6.367 119.511 1 35.92 ? C1' ANP 401 A 1 
HETATM 22 N N9 ANP . . . I 2 -58.419 -6.352 120.362 1 36.52 ? N9 ANP 401 A 1 
HETATM 23 C C8 ANP . . . I 2 -58.818 -5.369 121.245 1 37.97 ? C8 ANP 401 A 1 
HETATM 24 N N7 ANP . . . I 2 -59.997 -5.602 121.771 1 39.52 ? N7 ANP 401 A 1 
HETATM 25 C C5 ANP . . . I 2 -60.404 -6.795 121.181 1 40.46 ? C5 ANP 401 A 1 
HETATM 26 C C6 ANP . . . I 2 -61.566 -7.582 121.32 1 41 ? C6 ANP 401 A 1 
HETATM 27 N N6 ANP . . . I 2 -62.599 -7.229 122.083 1 41.33 ? N6 ANP 401 A 1 
HETATM 28 N N1 ANP . . . I 2 -61.65 -8.722 120.587 1 38.53 ? N1 ANP 401 A 1 
HETATM 29 C C2 ANP . . . I 2 -60.618 -9.048 119.805 1 40.7 ? C2 ANP 401 A 1 
HETATM 30 N N3 ANP . . . I 2 -59.485 -8.378 119.58 1 44.76 ? N3 ANP 401 A 1 
HETATM 31 C C4 ANP . . . I 2 -59.44 -7.255 120.312 1 39.58 ? C4 ANP 401 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#