data_7AGJ
#
_model_server_result.job_id            YMIhi9g659OpgeaZVABa5w 
_model_server_result.datetime_utc      '2025-03-03 04:13:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7agj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    7AGJ 
#
_exptl.entry_id    7AGJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7AGJ 
_cell.length_a            108.584 
_cell.length_b            108.584 
_cell.length_c            618.107 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AGJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 235 A CYS 235 1_555 A SG CYS 521 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 B SG CYS 235 B CYS 235 1_555 B SG CYS 521 B CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc1 C O1G ATP . A ATP 1001 1_555 G MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc2 C O1B ATP . A ATP 1001 1_555 G MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc3 C O2A ATP . A ATP 1001 1_555 G MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc4 D O3G ATP . A ATP 1002 1_555 G MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc5 D O3A ATP . A ATP 1002 1_555 G MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc6 O O1G ATP . B ATP 901 1_555 R MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? 
metalc ? metalc7 O O2G ATP . B ATP 901 1_555 R MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc8 O O1B ATP . B ATP 901 1_555 R MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc9 O O2A ATP . B ATP 901 1_555 R MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc10 P O2G ATP . B ATP 902 1_555 R MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc11 P O2B ATP . B ATP 902 1_555 R MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? 
metalc ? metalc12 P O2A ATP . B ATP 902 1_555 R MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7AGJ 
_atom_sites.fract_transf_matrix[1][1]    0.009209 
_atom_sites.fract_transf_matrix[1][2]    0.005317 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010634 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001618 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ATP A 1 1001 1001 ATP ATP . 
D 2 ATP A 1 1002 1101 ATP ATP . 
E 3 GOL A 1 1003 1201 GOL GOL . 
F 4 PEG A 1 1004 1301 PEG PEG . 
G 5 MG A 1 1005 2 MG MG . 
H 6 SO4 A 1 1006 1 SO4 SO4 . 
I 6 SO4 A 1 1007 2 SO4 SO4 . 
J 6 SO4 A 1 1008 3 SO4 SO4 . 
K 6 SO4 A 1 1009 4 SO4 SO4 . 
L 6 SO4 A 1 1010 5 SO4 SO4 . 
M 6 SO4 A 1 1011 6 SO4 SO4 . 
N 6 SO4 A 1 1012 7 SO4 SO4 . 
O 2 ATP B 1 901 801 ATP ATP . 
P 2 ATP B 1 902 901 ATP ATP . 
Q 4 PEG B 1 903 1001 PEG PEG . 
R 5 MG B 1 904 1 MG MG . 
S 6 SO4 B 1 905 8 SO4 SO4 . 
T 6 SO4 B 1 906 9 SO4 SO4 . 
U 6 SO4 B 1 907 10 SO4 SO4 . 
V 6 SO4 B 1 908 11 SO4 SO4 . 
W 7 HOH A 1 1101 63 HOH HOH . 
W 7 HOH A 2 1102 20 HOH HOH . 
W 7 HOH A 3 1103 66 HOH HOH . 
W 7 HOH A 4 1104 41 HOH HOH . 
W 7 HOH A 5 1105 10 HOH HOH . 
W 7 HOH A 6 1106 9 HOH HOH . 
W 7 HOH A 7 1107 1 HOH HOH . 
W 7 HOH A 8 1108 45 HOH HOH . 
W 7 HOH A 9 1109 38 HOH HOH . 
W 7 HOH A 10 1110 4 HOH HOH . 
W 7 HOH A 11 1111 36 HOH HOH . 
W 7 HOH A 12 1112 44 HOH HOH . 
W 7 HOH A 13 1113 16 HOH HOH . 
W 7 HOH A 14 1114 53 HOH HOH . 
W 7 HOH A 15 1115 42 HOH HOH . 
W 7 HOH A 16 1116 8 HOH HOH . 
W 7 HOH A 17 1117 18 HOH HOH . 
W 7 HOH A 18 1118 11 HOH HOH . 
W 7 HOH A 19 1119 2 HOH HOH . 
W 7 HOH A 20 1120 7 HOH HOH . 
W 7 HOH A 21 1121 3 HOH HOH . 
W 7 HOH A 22 1122 22 HOH HOH . 
W 7 HOH A 23 1123 13 HOH HOH . 
W 7 HOH A 24 1124 37 HOH HOH . 
W 7 HOH A 25 1125 5 HOH HOH . 
W 7 HOH A 26 1126 17 HOH HOH . 
W 7 HOH A 27 1127 21 HOH HOH . 
W 7 HOH A 28 1128 19 HOH HOH . 
W 7 HOH A 29 1129 68 HOH HOH . 
W 7 HOH A 30 1130 15 HOH HOH . 
W 7 HOH A 31 1131 55 HOH HOH . 
W 7 HOH A 32 1132 61 HOH HOH . 
W 7 HOH A 33 1133 65 HOH HOH . 
W 7 HOH A 34 1134 43 HOH HOH . 
W 7 HOH A 35 1135 6 HOH HOH . 
W 7 HOH A 36 1136 60 HOH HOH . 
W 7 HOH A 37 1137 67 HOH HOH . 
W 7 HOH A 38 1138 62 HOH HOH . 
W 7 HOH A 39 1139 64 HOH HOH . 
W 7 HOH A 40 1140 40 HOH HOH . 
W 7 HOH A 41 1141 12 HOH HOH . 
W 7 HOH A 42 1142 46 HOH HOH . 
W 7 HOH A 43 1143 59 HOH HOH . 
W 7 HOH A 44 1144 56 HOH HOH . 
W 7 HOH A 45 1145 39 HOH HOH . 
X 7 HOH B 1 1001 29 HOH HOH . 
X 7 HOH B 2 1002 30 HOH HOH . 
X 7 HOH B 3 1003 26 HOH HOH . 
X 7 HOH B 4 1004 48 HOH HOH . 
X 7 HOH B 5 1005 23 HOH HOH . 
X 7 HOH B 6 1006 76 HOH HOH . 
X 7 HOH B 7 1007 31 HOH HOH . 
X 7 HOH B 8 1008 32 HOH HOH . 
X 7 HOH B 9 1009 28 HOH HOH . 
X 7 HOH B 10 1010 24 HOH HOH . 
X 7 HOH B 11 1011 70 HOH HOH . 
X 7 HOH B 12 1012 52 HOH HOH . 
X 7 HOH B 13 1013 54 HOH HOH . 
X 7 HOH B 14 1014 69 HOH HOH . 
X 7 HOH B 15 1015 49 HOH HOH . 
X 7 HOH B 16 1016 33 HOH HOH . 
X 7 HOH B 17 1017 14 HOH HOH . 
X 7 HOH B 18 1018 50 HOH HOH . 
X 7 HOH B 19 1019 58 HOH HOH . 
X 7 HOH B 20 1020 57 HOH HOH . 
X 7 HOH B 21 1021 78 HOH HOH . 
X 7 HOH B 22 1022 35 HOH HOH . 
X 7 HOH B 23 1023 27 HOH HOH . 
X 7 HOH B 24 1024 51 HOH HOH . 
X 7 HOH B 25 1025 34 HOH HOH . 
X 7 HOH B 26 1026 75 HOH HOH . 
X 7 HOH B 27 1027 25 HOH HOH . 
X 7 HOH B 28 1028 47 HOH HOH . 
X 7 HOH B 29 1029 71 HOH HOH . 
X 7 HOH B 30 1030 77 HOH HOH . 
X 7 HOH B 31 1031 72 HOH HOH . 
X 7 HOH B 32 1032 73 HOH HOH . 
X 7 HOH B 33 1033 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 2 30.951 -18.538 -2.431 1 84.54 ? PG ATP 1001 A 1 
HETATM 2 O O1G ATP . . . C 2 29.69 -18.705 -1.617 1 79.88 ? O1G ATP 1001 A 1 
HETATM 3 O O2G ATP . . . C 2 30.749 -17.676 -3.66 1 81.06 ? O2G ATP 1001 A 1 
HETATM 4 O O3G ATP . . . C 2 32.138 -18.109 -1.591 1 77.18 ? O3G ATP 1001 A 1 
HETATM 5 P PB ATP . . . C 2 31.936 -21.338 -2.378 1 79.17 ? PB ATP 1001 A 1 
HETATM 6 O O1B ATP . . . C 2 31.822 -21.313 -0.888 1 74.57 ? O1B ATP 1001 A 1 
HETATM 7 O O2B ATP . . . C 2 33.271 -21.533 -3.015 1 77.73 ? O2B ATP 1001 A 1 
HETATM 8 O O3B ATP . . . C 2 31.301 -20.007 -2.999 1 82.05 ? O3B ATP 1001 A 1 
HETATM 9 P PA ATP . . . C 2 29.323 -22.616 -2.69 1 75.47 ? PA ATP 1001 A 1 
HETATM 10 O O1A ATP . . . C 2 28.63 -22.651 -4.012 1 76.71 ? O1A ATP 1001 A 1 
HETATM 11 O O2A ATP . . . C 2 28.865 -21.612 -1.687 1 78.68 ? O2A ATP 1001 A 1 
HETATM 12 O O3A ATP . . . C 2 30.897 -22.422 -2.934 1 78.29 ? O3A ATP 1001 A 1 
HETATM 13 O O5' ATP . . . C 2 29.283 -24.07 -2.018 1 75.64 ? O5' ATP 1001 A 1 
HETATM 14 C C5' ATP . . . C 2 29.566 -25.251 -2.81 1 73.12 ? C5' ATP 1001 A 1 
HETATM 15 C C4' ATP . . . C 2 29.905 -26.395 -1.886 1 73.29 ? C4' ATP 1001 A 1 
HETATM 16 O O4' ATP . . . C 2 31.25 -26.208 -1.373 1 74.97 ? O4' ATP 1001 A 1 
HETATM 17 C C3' ATP . . . C 2 29 -26.552 -0.652 1 72.75 ? C3' ATP 1001 A 1 
HETATM 18 O O3' ATP . . . C 2 28.577 -27.898 -0.478 1 73.82 ? O3' ATP 1001 A 1 
HETATM 19 C C2' ATP . . . C 2 29.894 -26.121 0.514 1 73.55 ? C2' ATP 1001 A 1 
HETATM 20 O O2' ATP . . . C 2 29.583 -26.795 1.713 1 76.36 ? O2' ATP 1001 A 1 
HETATM 21 C C1' ATP . . . C 2 31.268 -26.525 -0.002 1 75.45 ? C1' ATP 1001 A 1 
HETATM 22 N N9 ATP . . . C 2 32.377 -25.818 0.642 1 77.81 ? N9 ATP 1001 A 1 
HETATM 23 C C8 ATP . . . C 2 32.691 -24.482 0.559 1 79.27 ? C8 ATP 1001 A 1 
HETATM 24 N N7 ATP . . . C 2 33.749 -24.165 1.27 1 79.04 ? N7 ATP 1001 A 1 
HETATM 25 C C5 ATP . . . C 2 34.15 -25.36 1.856 1 82.33 ? C5 ATP 1001 A 1 
HETATM 26 C C6 ATP . . . C 2 35.208 -25.692 2.727 1 85.22 ? C6 ATP 1001 A 1 
HETATM 27 N N6 ATP . . . C 2 36.097 -24.814 3.184 1 84.11 ? N6 ATP 1001 A 1 
HETATM 28 N N1 ATP . . . C 2 35.309 -26.985 3.122 1 85.58 ? N1 ATP 1001 A 1 
HETATM 29 C C2 ATP . . . C 2 34.414 -27.868 2.66 1 83.14 ? C2 ATP 1001 A 1 
HETATM 30 N N3 ATP . . . C 2 33.383 -27.671 1.842 1 82.76 ? N3 ATP 1001 A 1 
HETATM 31 C C4 ATP . . . C 2 33.306 -26.382 1.474 1 80.08 ? C4 ATP 1001 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#