data_7AGO # _model_server_result.job_id nVUOGd9SoJZUcFNt6Cj7uQ _model_server_result.datetime_utc '2025-09-01 00:21:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ago # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7AGO # _exptl.entry_id 7AGO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.144 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-alpha-glutamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AGO _cell.length_a 85.74 _cell.length_b 85.74 _cell.length_c 75.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AGO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 38 A CYS 47 1_555 A SG CYS 86 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 B N ZGL . A ZGL 301 1_555 C C ALA . A ALA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A NE2 HIS 16 A HIS 25 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 A OE1 GLU 51 A GLU 60 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc3 A ND1 HIS 106 A HIS 115 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc4 D ZN ZN . A ZN 303 1_555 E O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? # _chem_comp.formula 'C5 H10 N2 O3' _chem_comp.formula_weight 146.144 _chem_comp.id ZGL _chem_comp.mon_nstd_flag . _chem_comp.name D-alpha-glutamine _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms Iso-D-glutamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CD ZGL sing 376 n n CD O2 ZGL doub 377 n n CD CA ZGL sing 378 n n N CA ZGL sing 379 n n N H ZGL sing 380 n n N H2 ZGL sing 381 n n N1 HN1 ZGL sing 382 n n N1 HN1A ZGL sing 383 n n CB CA ZGL sing 384 n n CA HA ZGL sing 385 n n CB CG ZGL sing 386 n n CB HB ZGL sing 387 n n CB HBA ZGL sing 388 n n CG C ZGL sing 389 n n O C ZGL doub 390 n n C OXT ZGL sing 391 n n CG HG ZGL sing 392 n n CG HGA ZGL sing 393 n n OXT HXT ZGL sing 394 n n # _atom_sites.entry_id 7AGO _atom_sites.fract_transf_matrix[1][1] 0.011663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZGL A 1 301 301 ZGL ZGL . C 3 ALA A 1 302 302 ALA ALA . D 4 ZN A 1 303 1 ZN ZN . E 5 HOH A 1 401 160 HOH HOH . E 5 HOH A 2 402 162 HOH HOH . E 5 HOH A 3 403 35 HOH HOH . E 5 HOH A 4 404 195 HOH HOH . E 5 HOH A 5 405 142 HOH HOH . E 5 HOH A 6 406 80 HOH HOH . E 5 HOH A 7 407 12 HOH HOH . E 5 HOH A 8 408 58 HOH HOH . E 5 HOH A 9 409 16 HOH HOH . E 5 HOH A 10 410 182 HOH HOH . E 5 HOH A 11 411 164 HOH HOH . E 5 HOH A 12 412 149 HOH HOH . E 5 HOH A 13 413 72 HOH HOH . E 5 HOH A 14 414 188 HOH HOH . E 5 HOH A 15 415 91 HOH HOH . E 5 HOH A 16 416 132 HOH HOH . E 5 HOH A 17 417 118 HOH HOH . E 5 HOH A 18 418 87 HOH HOH . E 5 HOH A 19 419 100 HOH HOH . E 5 HOH A 20 420 5 HOH HOH . E 5 HOH A 21 421 1 HOH HOH . E 5 HOH A 22 422 178 HOH HOH . E 5 HOH A 23 423 101 HOH HOH . E 5 HOH A 24 424 111 HOH HOH . E 5 HOH A 25 425 55 HOH HOH . E 5 HOH A 26 426 74 HOH HOH . E 5 HOH A 27 427 40 HOH HOH . E 5 HOH A 28 428 13 HOH HOH . E 5 HOH A 29 429 79 HOH HOH . E 5 HOH A 30 430 39 HOH HOH . E 5 HOH A 31 431 213 HOH HOH . E 5 HOH A 32 432 41 HOH HOH . E 5 HOH A 33 433 7 HOH HOH . E 5 HOH A 34 434 180 HOH HOH . E 5 HOH A 35 435 136 HOH HOH . E 5 HOH A 36 436 45 HOH HOH . E 5 HOH A 37 437 193 HOH HOH . E 5 HOH A 38 438 146 HOH HOH . E 5 HOH A 39 439 144 HOH HOH . E 5 HOH A 40 440 85 HOH HOH . E 5 HOH A 41 441 95 HOH HOH . E 5 HOH A 42 442 36 HOH HOH . E 5 HOH A 43 443 143 HOH HOH . E 5 HOH A 44 444 29 HOH HOH . E 5 HOH A 45 445 89 HOH HOH . E 5 HOH A 46 446 176 HOH HOH . E 5 HOH A 47 447 225 HOH HOH . E 5 HOH A 48 448 177 HOH HOH . E 5 HOH A 49 449 2 HOH HOH . E 5 HOH A 50 450 14 HOH HOH . E 5 HOH A 51 451 82 HOH HOH . E 5 HOH A 52 452 62 HOH HOH . E 5 HOH A 53 453 128 HOH HOH . E 5 HOH A 54 454 189 HOH HOH . E 5 HOH A 55 455 60 HOH HOH . E 5 HOH A 56 456 93 HOH HOH . E 5 HOH A 57 457 43 HOH HOH . E 5 HOH A 58 458 11 HOH HOH . E 5 HOH A 59 459 28 HOH HOH . E 5 HOH A 60 460 112 HOH HOH . E 5 HOH A 61 461 15 HOH HOH . E 5 HOH A 62 462 108 HOH HOH . E 5 HOH A 63 463 73 HOH HOH . E 5 HOH A 64 464 48 HOH HOH . E 5 HOH A 65 465 27 HOH HOH . E 5 HOH A 66 466 52 HOH HOH . E 5 HOH A 67 467 97 HOH HOH . E 5 HOH A 68 468 88 HOH HOH . E 5 HOH A 69 469 25 HOH HOH . E 5 HOH A 70 470 17 HOH HOH . E 5 HOH A 71 471 192 HOH HOH . E 5 HOH A 72 472 21 HOH HOH . E 5 HOH A 73 473 120 HOH HOH . E 5 HOH A 74 474 170 HOH HOH . E 5 HOH A 75 475 119 HOH HOH . E 5 HOH A 76 476 38 HOH HOH . E 5 HOH A 77 477 217 HOH HOH . E 5 HOH A 78 478 4 HOH HOH . E 5 HOH A 79 479 167 HOH HOH . E 5 HOH A 80 480 70 HOH HOH . E 5 HOH A 81 481 154 HOH HOH . E 5 HOH A 82 482 32 HOH HOH . E 5 HOH A 83 483 26 HOH HOH . E 5 HOH A 84 484 139 HOH HOH . E 5 HOH A 85 485 46 HOH HOH . E 5 HOH A 86 486 253 HOH HOH . E 5 HOH A 87 487 200 HOH HOH . E 5 HOH A 88 488 102 HOH HOH . E 5 HOH A 89 489 124 HOH HOH . E 5 HOH A 90 490 53 HOH HOH . E 5 HOH A 91 491 152 HOH HOH . E 5 HOH A 92 492 130 HOH HOH . E 5 HOH A 93 493 37 HOH HOH . E 5 HOH A 94 494 126 HOH HOH . E 5 HOH A 95 495 68 HOH HOH . E 5 HOH A 96 496 156 HOH HOH . E 5 HOH A 97 497 3 HOH HOH . E 5 HOH A 98 498 64 HOH HOH . E 5 HOH A 99 499 30 HOH HOH . E 5 HOH A 100 500 76 HOH HOH . E 5 HOH A 101 501 8 HOH HOH . E 5 HOH A 102 502 78 HOH HOH . E 5 HOH A 103 503 107 HOH HOH . E 5 HOH A 104 504 6 HOH HOH . E 5 HOH A 105 505 109 HOH HOH . E 5 HOH A 106 506 77 HOH HOH . E 5 HOH A 107 507 66 HOH HOH . E 5 HOH A 108 508 9 HOH HOH . E 5 HOH A 109 509 10 HOH HOH . E 5 HOH A 110 510 57 HOH HOH . E 5 HOH A 111 511 110 HOH HOH . E 5 HOH A 112 512 256 HOH HOH . E 5 HOH A 113 513 23 HOH HOH . E 5 HOH A 114 514 47 HOH HOH . E 5 HOH A 115 515 83 HOH HOH . E 5 HOH A 116 516 123 HOH HOH . E 5 HOH A 117 517 230 HOH HOH . E 5 HOH A 118 518 258 HOH HOH . E 5 HOH A 119 519 140 HOH HOH . E 5 HOH A 120 520 259 HOH HOH . E 5 HOH A 121 521 31 HOH HOH . E 5 HOH A 122 522 75 HOH HOH . E 5 HOH A 123 523 94 HOH HOH . E 5 HOH A 124 524 59 HOH HOH . E 5 HOH A 125 525 71 HOH HOH . E 5 HOH A 126 526 18 HOH HOH . E 5 HOH A 127 527 196 HOH HOH . E 5 HOH A 128 528 105 HOH HOH . E 5 HOH A 129 529 96 HOH HOH . E 5 HOH A 130 530 145 HOH HOH . E 5 HOH A 131 531 141 HOH HOH . E 5 HOH A 132 532 179 HOH HOH . E 5 HOH A 133 533 163 HOH HOH . E 5 HOH A 134 534 103 HOH HOH . E 5 HOH A 135 535 183 HOH HOH . E 5 HOH A 136 536 19 HOH HOH . E 5 HOH A 137 537 22 HOH HOH . E 5 HOH A 138 538 113 HOH HOH . E 5 HOH A 139 539 20 HOH HOH . E 5 HOH A 140 540 129 HOH HOH . E 5 HOH A 141 541 122 HOH HOH . E 5 HOH A 142 542 116 HOH HOH . E 5 HOH A 143 543 247 HOH HOH . E 5 HOH A 144 544 69 HOH HOH . E 5 HOH A 145 545 81 HOH HOH . E 5 HOH A 146 546 42 HOH HOH . E 5 HOH A 147 547 56 HOH HOH . E 5 HOH A 148 548 153 HOH HOH . E 5 HOH A 149 549 24 HOH HOH . E 5 HOH A 150 550 186 HOH HOH . E 5 HOH A 151 551 234 HOH HOH . E 5 HOH A 152 552 166 HOH HOH . E 5 HOH A 153 553 54 HOH HOH . E 5 HOH A 154 554 148 HOH HOH . E 5 HOH A 155 555 34 HOH HOH . E 5 HOH A 156 556 99 HOH HOH . E 5 HOH A 157 557 210 HOH HOH . E 5 HOH A 158 558 44 HOH HOH . E 5 HOH A 159 559 169 HOH HOH . E 5 HOH A 160 560 51 HOH HOH . E 5 HOH A 161 561 33 HOH HOH . E 5 HOH A 162 562 237 HOH HOH . E 5 HOH A 163 563 187 HOH HOH . E 5 HOH A 164 564 254 HOH HOH . E 5 HOH A 165 565 220 HOH HOH . E 5 HOH A 166 566 227 HOH HOH . E 5 HOH A 167 567 207 HOH HOH . E 5 HOH A 168 568 159 HOH HOH . E 5 HOH A 169 569 121 HOH HOH . E 5 HOH A 170 570 174 HOH HOH . E 5 HOH A 171 571 252 HOH HOH . E 5 HOH A 172 572 264 HOH HOH . E 5 HOH A 173 573 49 HOH HOH . E 5 HOH A 174 574 250 HOH HOH . E 5 HOH A 175 575 175 HOH HOH . E 5 HOH A 176 576 147 HOH HOH . E 5 HOH A 177 577 173 HOH HOH . E 5 HOH A 178 578 157 HOH HOH . E 5 HOH A 179 579 260 HOH HOH . E 5 HOH A 180 580 261 HOH HOH . E 5 HOH A 181 581 223 HOH HOH . E 5 HOH A 182 582 248 HOH HOH . E 5 HOH A 183 583 181 HOH HOH . E 5 HOH A 184 584 268 HOH HOH . E 5 HOH A 185 585 255 HOH HOH . E 5 HOH A 186 586 61 HOH HOH . E 5 HOH A 187 587 50 HOH HOH . E 5 HOH A 188 588 67 HOH HOH . E 5 HOH A 189 589 114 HOH HOH . E 5 HOH A 190 590 211 HOH HOH . E 5 HOH A 191 591 238 HOH HOH . E 5 HOH A 192 592 106 HOH HOH . E 5 HOH A 193 593 115 HOH HOH . E 5 HOH A 194 594 208 HOH HOH . E 5 HOH A 195 595 158 HOH HOH . E 5 HOH A 196 596 191 HOH HOH . E 5 HOH A 197 597 137 HOH HOH . E 5 HOH A 198 598 135 HOH HOH . E 5 HOH A 199 599 201 HOH HOH . E 5 HOH A 200 600 199 HOH HOH . E 5 HOH A 201 601 205 HOH HOH . E 5 HOH A 202 602 168 HOH HOH . E 5 HOH A 203 603 184 HOH HOH . E 5 HOH A 204 604 117 HOH HOH . E 5 HOH A 205 605 86 HOH HOH . E 5 HOH A 206 606 84 HOH HOH . E 5 HOH A 207 607 206 HOH HOH . E 5 HOH A 208 608 165 HOH HOH . E 5 HOH A 209 609 232 HOH HOH . E 5 HOH A 210 610 127 HOH HOH . E 5 HOH A 211 611 190 HOH HOH . E 5 HOH A 212 612 197 HOH HOH . E 5 HOH A 213 613 244 HOH HOH . E 5 HOH A 214 614 262 HOH HOH . E 5 HOH A 215 615 138 HOH HOH . E 5 HOH A 216 616 65 HOH HOH . E 5 HOH A 217 617 133 HOH HOH . E 5 HOH A 218 618 203 HOH HOH . E 5 HOH A 219 619 63 HOH HOH . E 5 HOH A 220 620 161 HOH HOH . E 5 HOH A 221 621 241 HOH HOH . E 5 HOH A 222 622 150 HOH HOH . E 5 HOH A 223 623 251 HOH HOH . E 5 HOH A 224 624 246 HOH HOH . E 5 HOH A 225 625 134 HOH HOH . E 5 HOH A 226 626 172 HOH HOH . E 5 HOH A 227 627 194 HOH HOH . E 5 HOH A 228 628 198 HOH HOH . E 5 HOH A 229 629 202 HOH HOH . E 5 HOH A 230 630 236 HOH HOH . E 5 HOH A 231 631 155 HOH HOH . E 5 HOH A 232 632 151 HOH HOH . E 5 HOH A 233 633 90 HOH HOH . E 5 HOH A 234 634 104 HOH HOH . E 5 HOH A 235 635 131 HOH HOH . E 5 HOH A 236 636 92 HOH HOH . E 5 HOH A 237 637 98 HOH HOH . E 5 HOH A 238 638 171 HOH HOH . E 5 HOH A 239 639 125 HOH HOH . E 5 HOH A 240 640 243 HOH HOH . E 5 HOH A 241 641 239 HOH HOH . E 5 HOH A 242 642 267 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CD ZGL . . . B 2 -2.004 18.402 -8.863 0.93 42.15 ? CD ZGL 301 A 1 HETATM 2 N N ZGL . . . B 2 0.326 17.745 -8.36 0.93 42.75 ? N ZGL 301 A 1 HETATM 3 O O2 ZGL . . . B 2 -1.561 19.417 -9.404 0.93 37.62 ? O2 ZGL 301 A 1 HETATM 4 N N1 ZGL . . . B 2 -3.292 18.193 -8.627 0.93 30.71 ? N1 ZGL 301 A 1 HETATM 5 C CA ZGL . . . B 2 -1.066 17.287 -8.415 0.93 37.58 ? CA ZGL 301 A 1 HETATM 6 C CB ZGL . . . B 2 -1.257 16.063 -9.318 0.93 32.15 ? CB ZGL 301 A 1 HETATM 7 C C ZGL . . . B 2 -1.26 15.25 -11.764 0.93 16.85 ? C ZGL 301 A 1 HETATM 8 C CG ZGL . . . B 2 -1.06 16.396 -10.786 0.93 26.37 ? CG ZGL 301 A 1 HETATM 9 O OXT ZGL . . . B 2 -1.543 14.109 -11.315 0.93 22.41 -1 OXT ZGL 301 A 1 HETATM 10 O O ZGL . . . B 2 -1.142 15.504 -12.968 0.93 17.8 ? O ZGL 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #