data_7AGP
#
_model_server_result.job_id            RqFvvKQnGdw8lDURNK_mMw 
_model_server_result.datetime_utc      '2024-11-24 02:58:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7agp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    7AGP 
#
_exptl.entry_id    7AGP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AGP 
_cell.length_a            146.028 
_cell.length_b            157.14 
_cell.length_c            114.255 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AGP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             43 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              477 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             43 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              477 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.049 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7AGP 
_atom_sites.fract_transf_matrix[1][1]    0.006848 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006364 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008752 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 901 1 EDO EDO . 
D 2 EDO B 1 901 2 EDO EDO . 
E 3 HOH A 1 1001 13 HOH HOH . 
E 3 HOH A 2 1002 145 HOH HOH . 
E 3 HOH A 3 1003 101 HOH HOH . 
E 3 HOH A 4 1004 85 HOH HOH . 
E 3 HOH A 5 1005 59 HOH HOH . 
E 3 HOH A 6 1006 47 HOH HOH . 
E 3 HOH A 7 1007 38 HOH HOH . 
E 3 HOH A 8 1008 47 HOH HOH . 
E 3 HOH A 9 1009 149 HOH HOH . 
E 3 HOH A 10 1010 12 HOH HOH . 
E 3 HOH A 11 1011 124 HOH HOH . 
E 3 HOH A 12 1012 79 HOH HOH . 
E 3 HOH A 13 1013 52 HOH HOH . 
E 3 HOH A 14 1014 2 HOH HOH . 
E 3 HOH A 15 1015 14 HOH HOH . 
E 3 HOH A 16 1016 120 HOH HOH . 
E 3 HOH A 17 1017 87 HOH HOH . 
E 3 HOH A 18 1018 69 HOH HOH . 
E 3 HOH A 19 1019 205 HOH HOH . 
E 3 HOH A 20 1020 38 HOH HOH . 
E 3 HOH A 21 1021 81 HOH HOH . 
E 3 HOH A 22 1022 74 HOH HOH . 
E 3 HOH A 23 1023 93 HOH HOH . 
E 3 HOH A 24 1024 139 HOH HOH . 
E 3 HOH A 25 1025 27 HOH HOH . 
E 3 HOH A 26 1026 3 HOH HOH . 
E 3 HOH A 27 1027 44 HOH HOH . 
E 3 HOH A 28 1028 58 HOH HOH . 
E 3 HOH A 29 1029 99 HOH HOH . 
E 3 HOH A 30 1030 82 HOH HOH . 
E 3 HOH A 31 1031 153 HOH HOH . 
E 3 HOH A 32 1032 26 HOH HOH . 
E 3 HOH A 33 1033 132 HOH HOH . 
E 3 HOH A 34 1034 194 HOH HOH . 
E 3 HOH A 35 1035 19 HOH HOH . 
E 3 HOH A 36 1036 27 HOH HOH . 
E 3 HOH A 37 1037 94 HOH HOH . 
E 3 HOH A 38 1038 55 HOH HOH . 
E 3 HOH A 39 1039 37 HOH HOH . 
E 3 HOH A 40 1040 34 HOH HOH . 
E 3 HOH A 41 1041 5 HOH HOH . 
E 3 HOH A 42 1042 23 HOH HOH . 
E 3 HOH A 43 1043 50 HOH HOH . 
E 3 HOH A 44 1044 58 HOH HOH . 
E 3 HOH A 45 1045 83 HOH HOH . 
E 3 HOH A 46 1046 126 HOH HOH . 
E 3 HOH A 47 1047 109 HOH HOH . 
E 3 HOH A 48 1048 159 HOH HOH . 
E 3 HOH A 49 1049 13 HOH HOH . 
E 3 HOH A 50 1050 89 HOH HOH . 
E 3 HOH A 51 1051 39 HOH HOH . 
E 3 HOH A 52 1052 60 HOH HOH . 
E 3 HOH A 53 1053 135 HOH HOH . 
E 3 HOH A 54 1054 8 HOH HOH . 
E 3 HOH A 55 1055 209 HOH HOH . 
E 3 HOH A 56 1056 134 HOH HOH . 
E 3 HOH A 57 1057 92 HOH HOH . 
E 3 HOH A 58 1058 73 HOH HOH . 
E 3 HOH A 59 1059 57 HOH HOH . 
E 3 HOH A 60 1060 57 HOH HOH . 
E 3 HOH A 61 1061 79 HOH HOH . 
E 3 HOH A 62 1062 140 HOH HOH . 
E 3 HOH A 63 1063 113 HOH HOH . 
E 3 HOH A 64 1064 88 HOH HOH . 
E 3 HOH A 65 1065 112 HOH HOH . 
E 3 HOH A 66 1066 48 HOH HOH . 
E 3 HOH A 67 1067 49 HOH HOH . 
E 3 HOH A 68 1068 62 HOH HOH . 
E 3 HOH A 69 1069 10 HOH HOH . 
E 3 HOH A 70 1070 22 HOH HOH . 
E 3 HOH A 71 1071 95 HOH HOH . 
E 3 HOH A 72 1072 97 HOH HOH . 
E 3 HOH A 73 1073 56 HOH HOH . 
E 3 HOH A 74 1074 106 HOH HOH . 
E 3 HOH A 75 1075 129 HOH HOH . 
E 3 HOH A 76 1076 10 HOH HOH . 
E 3 HOH A 77 1077 90 HOH HOH . 
E 3 HOH A 78 1078 68 HOH HOH . 
E 3 HOH A 79 1079 37 HOH HOH . 
E 3 HOH A 80 1080 32 HOH HOH . 
E 3 HOH A 81 1081 106 HOH HOH . 
E 3 HOH A 82 1082 151 HOH HOH . 
E 3 HOH A 83 1083 72 HOH HOH . 
E 3 HOH A 84 1084 67 HOH HOH . 
E 3 HOH A 85 1085 6 HOH HOH . 
E 3 HOH A 86 1086 86 HOH HOH . 
E 3 HOH A 87 1087 72 HOH HOH . 
E 3 HOH A 88 1088 190 HOH HOH . 
E 3 HOH A 89 1089 43 HOH HOH . 
E 3 HOH A 90 1090 18 HOH HOH . 
E 3 HOH A 91 1091 41 HOH HOH . 
E 3 HOH A 92 1092 103 HOH HOH . 
E 3 HOH A 93 1093 12 HOH HOH . 
E 3 HOH A 94 1094 110 HOH HOH . 
E 3 HOH A 95 1095 63 HOH HOH . 
E 3 HOH A 96 1096 20 HOH HOH . 
E 3 HOH A 97 1097 78 HOH HOH . 
E 3 HOH A 98 1098 36 HOH HOH . 
E 3 HOH A 99 1099 108 HOH HOH . 
E 3 HOH A 100 1100 102 HOH HOH . 
E 3 HOH A 101 1101 111 HOH HOH . 
E 3 HOH A 102 1102 81 HOH HOH . 
E 3 HOH A 103 1103 77 HOH HOH . 
E 3 HOH A 104 1104 52 HOH HOH . 
E 3 HOH A 105 1105 84 HOH HOH . 
E 3 HOH A 106 1106 64 HOH HOH . 
E 3 HOH A 107 1107 75 HOH HOH . 
F 3 HOH B 1 1001 113 HOH HOH . 
F 3 HOH B 2 1002 60 HOH HOH . 
F 3 HOH B 3 1003 63 HOH HOH . 
F 3 HOH B 4 1004 103 HOH HOH . 
F 3 HOH B 5 1005 98 HOH HOH . 
F 3 HOH B 6 1006 11 HOH HOH . 
F 3 HOH B 7 1007 104 HOH HOH . 
F 3 HOH B 8 1008 64 HOH HOH . 
F 3 HOH B 9 1009 31 HOH HOH . 
F 3 HOH B 10 1010 30 HOH HOH . 
F 3 HOH B 11 1011 59 HOH HOH . 
F 3 HOH B 12 1012 24 HOH HOH . 
F 3 HOH B 13 1013 28 HOH HOH . 
F 3 HOH B 14 1014 95 HOH HOH . 
F 3 HOH B 15 1015 93 HOH HOH . 
F 3 HOH B 16 1016 105 HOH HOH . 
F 3 HOH B 17 1017 107 HOH HOH . 
F 3 HOH B 18 1018 34 HOH HOH . 
F 3 HOH B 19 1019 99 HOH HOH . 
F 3 HOH B 20 1020 5 HOH HOH . 
F 3 HOH B 21 1021 125 HOH HOH . 
F 3 HOH B 22 1022 16 HOH HOH . 
F 3 HOH B 23 1023 33 HOH HOH . 
F 3 HOH B 24 1024 43 HOH HOH . 
F 3 HOH B 25 1025 1 HOH HOH . 
F 3 HOH B 26 1026 32 HOH HOH . 
F 3 HOH B 27 1027 33 HOH HOH . 
F 3 HOH B 28 1028 107 HOH HOH . 
F 3 HOH B 29 1029 92 HOH HOH . 
F 3 HOH B 30 1030 101 HOH HOH . 
F 3 HOH B 31 1031 1 HOH HOH . 
F 3 HOH B 32 1032 21 HOH HOH . 
F 3 HOH B 33 1033 127 HOH HOH . 
F 3 HOH B 34 1034 96 HOH HOH . 
F 3 HOH B 35 1035 30 HOH HOH . 
F 3 HOH B 36 1036 56 HOH HOH . 
F 3 HOH B 37 1037 4 HOH HOH . 
F 3 HOH B 38 1038 40 HOH HOH . 
F 3 HOH B 39 1039 4 HOH HOH . 
F 3 HOH B 40 1040 7 HOH HOH . 
F 3 HOH B 41 1041 102 HOH HOH . 
F 3 HOH B 42 1042 19 HOH HOH . 
F 3 HOH B 43 1043 25 HOH HOH . 
F 3 HOH B 44 1044 50 HOH HOH . 
F 3 HOH B 45 1045 21 HOH HOH . 
F 3 HOH B 46 1046 122 HOH HOH . 
F 3 HOH B 47 1047 54 HOH HOH . 
F 3 HOH B 48 1048 15 HOH HOH . 
F 3 HOH B 49 1049 208 HOH HOH . 
F 3 HOH B 50 1050 9 HOH HOH . 
F 3 HOH B 51 1051 3 HOH HOH . 
F 3 HOH B 52 1052 70 HOH HOH . 
F 3 HOH B 53 1053 8 HOH HOH . 
F 3 HOH B 54 1054 9 HOH HOH . 
F 3 HOH B 55 1055 53 HOH HOH . 
F 3 HOH B 56 1056 131 HOH HOH . 
F 3 HOH B 57 1057 98 HOH HOH . 
F 3 HOH B 58 1058 136 HOH HOH . 
F 3 HOH B 59 1059 160 HOH HOH . 
F 3 HOH B 60 1060 65 HOH HOH . 
F 3 HOH B 61 1061 15 HOH HOH . 
F 3 HOH B 62 1062 14 HOH HOH . 
F 3 HOH B 63 1063 11 HOH HOH . 
F 3 HOH B 64 1064 40 HOH HOH . 
F 3 HOH B 65 1065 35 HOH HOH . 
F 3 HOH B 66 1066 28 HOH HOH . 
F 3 HOH B 67 1067 110 HOH HOH . 
F 3 HOH B 68 1068 25 HOH HOH . 
F 3 HOH B 69 1069 115 HOH HOH . 
F 3 HOH B 70 1070 108 HOH HOH . 
F 3 HOH B 71 1071 150 HOH HOH . 
F 3 HOH B 72 1072 48 HOH HOH . 
F 3 HOH B 73 1073 53 HOH HOH . 
F 3 HOH B 74 1074 61 HOH HOH . 
F 3 HOH B 75 1075 154 HOH HOH . 
F 3 HOH B 76 1076 55 HOH HOH . 
F 3 HOH B 77 1077 167 HOH HOH . 
F 3 HOH B 78 1078 76 HOH HOH . 
F 3 HOH B 79 1079 200 HOH HOH . 
F 3 HOH B 80 1080 70 HOH HOH . 
F 3 HOH B 81 1081 94 HOH HOH . 
F 3 HOH B 82 1082 46 HOH HOH . 
F 3 HOH B 83 1083 66 HOH HOH . 
F 3 HOH B 84 1084 184 HOH HOH . 
F 3 HOH B 85 1085 201 HOH HOH . 
F 3 HOH B 86 1086 85 HOH HOH . 
F 3 HOH B 87 1087 20 HOH HOH . 
F 3 HOH B 88 1088 203 HOH HOH . 
F 3 HOH B 89 1089 65 HOH HOH . 
F 3 HOH B 90 1090 17 HOH HOH . 
F 3 HOH B 91 1091 42 HOH HOH . 
F 3 HOH B 92 1092 97 HOH HOH . 
F 3 HOH B 93 1093 91 HOH HOH . 
F 3 HOH B 94 1094 24 HOH HOH . 
F 3 HOH B 95 1095 77 HOH HOH . 
F 3 HOH B 96 1096 7 HOH HOH . 
F 3 HOH B 97 1097 68 HOH HOH . 
F 3 HOH B 98 1098 45 HOH HOH . 
F 3 HOH B 99 1099 31 HOH HOH . 
F 3 HOH B 100 1100 112 HOH HOH . 
F 3 HOH B 101 1101 2 HOH HOH . 
F 3 HOH B 102 1102 76 HOH HOH . 
F 3 HOH B 103 1103 51 HOH HOH . 
F 3 HOH B 104 1104 61 HOH HOH . 
F 3 HOH B 105 1105 114 HOH HOH . 
F 3 HOH B 106 1106 42 HOH HOH . 
F 3 HOH B 107 1107 35 HOH HOH . 
F 3 HOH B 108 1108 186 HOH HOH . 
F 3 HOH B 109 1109 87 HOH HOH . 
F 3 HOH B 110 1110 67 HOH HOH . 
F 3 HOH B 111 1111 69 HOH HOH . 
F 3 HOH B 112 1112 100 HOH HOH . 
F 3 HOH B 113 1113 74 HOH HOH . 
F 3 HOH B 114 1114 80 HOH HOH . 
F 3 HOH B 115 1115 115 HOH HOH . 
F 3 HOH B 116 1116 104 HOH HOH . 
F 3 HOH B 117 1117 157 HOH HOH . 
F 3 HOH B 118 1118 105 HOH HOH . 
F 3 HOH B 119 1119 80 HOH HOH . 
F 3 HOH B 120 1120 109 HOH HOH . 
F 3 HOH B 121 1121 29 HOH HOH . 
F 3 HOH B 122 1122 45 HOH HOH . 
F 3 HOH B 123 1123 83 HOH HOH . 
F 3 HOH B 124 1124 71 HOH HOH . 
F 3 HOH B 125 1125 36 HOH HOH . 
F 3 HOH B 126 1126 16 HOH HOH . 
F 3 HOH B 127 1127 49 HOH HOH . 
F 3 HOH B 128 1128 89 HOH HOH . 
F 3 HOH B 129 1129 46 HOH HOH . 
F 3 HOH B 130 1130 114 HOH HOH . 
F 3 HOH B 131 1131 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 46.506 -48.307 9.379 1 99.61 ? C1 EDO 901 A 1 
HETATM 2 O O1 EDO . . . C 2 46.825 -47.176 10.23 1 98.88 ? O1 EDO 901 A 1 
HETATM 3 C C2 EDO . . . C 2 46.091 -49.628 10.16 1 100 ? C2 EDO 901 A 1 
HETATM 4 O O2 EDO . . . C 2 47.243 -50.435 10.508 1 99.95 ? O2 EDO 901 A 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           4 
#