data_7AGS # _model_server_result.job_id fcoZ6H5pdupuxs_G45hQuA _model_server_result.datetime_utc '2024-11-30 17:54:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ags # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 7AGS # _exptl.entry_id 7AGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYLMALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AGS _cell.length_a 147.74 _cell.length_b 156.59 _cell.length_c 115.52 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id DXX _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYLMALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DXX sing 83 n n C1 OXT DXX doub 84 n n C1 CA DXX sing 85 n n O1 H1 DXX sing 86 n n CA CB DXX sing 87 n n CA C DXX sing 88 n n CA HA DXX sing 89 n n CB HB1 DXX sing 90 n n CB HB2 DXX sing 91 n n CB HB3 DXX sing 92 n n C O DXX doub 93 n n C O2 DXX sing 94 n n O2 HO2 DXX sing 95 n n # _atom_sites.entry_id 7AGS _atom_sites.fract_transf_matrix[1][1] 0.006769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DXX A 1 901 901 DXX MMA . D 3 HOH A 1 1001 27 HOH HOH . D 3 HOH A 2 1002 24 HOH HOH . D 3 HOH A 3 1003 20 HOH HOH . D 3 HOH A 4 1004 7 HOH HOH . D 3 HOH A 5 1005 14 HOH HOH . D 3 HOH A 6 1006 5 HOH HOH . D 3 HOH A 7 1007 28 HOH HOH . D 3 HOH A 8 1008 2 HOH HOH . D 3 HOH A 9 1009 17 HOH HOH . D 3 HOH A 10 1010 1 HOH HOH . D 3 HOH A 11 1011 11 HOH HOH . D 3 HOH A 12 1012 6 HOH HOH . D 3 HOH A 13 1013 19 HOH HOH . E 3 HOH B 1 901 4 HOH HOH . E 3 HOH B 2 902 13 HOH HOH . E 3 HOH B 3 903 16 HOH HOH . E 3 HOH B 4 904 29 HOH HOH . E 3 HOH B 5 905 21 HOH HOH . E 3 HOH B 6 906 3 HOH HOH . E 3 HOH B 7 907 23 HOH HOH . E 3 HOH B 8 908 15 HOH HOH . E 3 HOH B 9 909 8 HOH HOH . E 3 HOH B 10 910 9 HOH HOH . E 3 HOH B 11 911 12 HOH HOH . E 3 HOH B 12 912 10 HOH HOH . E 3 HOH B 13 913 22 HOH HOH . E 3 HOH B 14 914 25 HOH HOH . E 3 HOH B 15 915 26 HOH HOH . E 3 HOH B 16 916 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DXX . . . C 2 43.522 -38.613 -3.65 1 113.52 ? C1 DXX 901 A 1 HETATM 2 O O1 DXX . . . C 2 44.141 -37.463 -3.87 1 113.98 ? O1 DXX 901 A 1 HETATM 3 O OXT DXX . . . C 2 43.594 -39.242 -2.598 1 113.61 ? OXT DXX 901 A 1 HETATM 4 C CA DXX . . . C 2 42.65 -39.042 -4.817 1 112.34 ? CA DXX 901 A 1 HETATM 5 C CB DXX . . . C 2 43.452 -39.24 -6.112 1 112.49 ? CB DXX 901 A 1 HETATM 6 C C DXX . . . C 2 41.581 -37.985 -5.033 1 109.89 ? C DXX 901 A 1 HETATM 7 O O DXX . . . C 2 41.759 -36.96 -5.641 1 109.99 ? O DXX 901 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #