data_7AGT
#
_model_server_result.job_id            nNcjppBIsCB1KLJ2MAa2Fg 
_model_server_result.datetime_utc      '2024-11-24 01:35:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7agt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    7AGT 
#
_exptl.entry_id    7AGT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AGT 
_cell.length_a            148.476 
_cell.length_b            156.119 
_cell.length_c            115.552 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AGT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 43 A CYS 477 1_555 B SG CYS 43 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A OG SER 189 A SER 623 1_555 C C1 MLA . A MLA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale2 B OG SER 189 B SER 623 1_555 D C1 MLA . B MLA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 237 n n 
C1 O1B MLA doub 238 n n 
C1 C2 MLA sing 239 n n 
O1A H1A MLA sing 240 n n 
C2 C3 MLA sing 241 n n 
C2 HC21 MLA sing 242 n n 
C2 HC22 MLA sing 243 n n 
C3 O3A MLA doub 244 n n 
C3 O3B MLA sing 245 n n 
O3B H3B MLA sing 246 n n 
#
_atom_sites.entry_id                     7AGT 
_atom_sites.fract_transf_matrix[1][1]    0.006735 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006405 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008654 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MLA A 1 901 901 MLA MAC . 
D 2 MLA B 1 901 901 MLA MAC . 
E 3 HOH A 1 1001 9 HOH HOH . 
E 3 HOH A 2 1002 37 HOH HOH . 
E 3 HOH A 3 1003 30 HOH HOH . 
E 3 HOH A 4 1004 58 HOH HOH . 
E 3 HOH A 5 1005 168 HOH HOH . 
E 3 HOH A 6 1006 11 HOH HOH . 
E 3 HOH A 7 1007 40 HOH HOH . 
E 3 HOH A 8 1008 114 HOH HOH . 
E 3 HOH A 9 1009 56 HOH HOH . 
E 3 HOH A 10 1010 79 HOH HOH . 
E 3 HOH A 11 1011 15 HOH HOH . 
E 3 HOH A 12 1012 69 HOH HOH . 
E 3 HOH A 13 1013 14 HOH HOH . 
E 3 HOH A 14 1014 158 HOH HOH . 
E 3 HOH A 15 1015 16 HOH HOH . 
E 3 HOH A 16 1016 13 HOH HOH . 
E 3 HOH A 17 1017 76 HOH HOH . 
E 3 HOH A 18 1018 76 HOH HOH . 
E 3 HOH A 19 1019 42 HOH HOH . 
E 3 HOH A 20 1020 45 HOH HOH . 
E 3 HOH A 21 1021 60 HOH HOH . 
E 3 HOH A 22 1022 3 HOH HOH . 
E 3 HOH A 23 1023 4 HOH HOH . 
E 3 HOH A 24 1024 77 HOH HOH . 
E 3 HOH A 25 1025 62 HOH HOH . 
E 3 HOH A 26 1026 66 HOH HOH . 
E 3 HOH A 27 1027 27 HOH HOH . 
E 3 HOH A 28 1028 80 HOH HOH . 
E 3 HOH A 29 1029 78 HOH HOH . 
E 3 HOH A 30 1030 19 HOH HOH . 
E 3 HOH A 31 1031 25 HOH HOH . 
E 3 HOH A 32 1032 23 HOH HOH . 
E 3 HOH A 33 1033 51 HOH HOH . 
E 3 HOH A 34 1034 67 HOH HOH . 
E 3 HOH A 35 1035 73 HOH HOH . 
E 3 HOH A 36 1036 41 HOH HOH . 
E 3 HOH A 37 1037 2 HOH HOH . 
E 3 HOH A 38 1038 153 HOH HOH . 
E 3 HOH A 39 1039 43 HOH HOH . 
E 3 HOH A 40 1040 71 HOH HOH . 
E 3 HOH A 41 1041 9 HOH HOH . 
E 3 HOH A 42 1042 20 HOH HOH . 
E 3 HOH A 43 1043 18 HOH HOH . 
E 3 HOH A 44 1044 79 HOH HOH . 
E 3 HOH A 45 1045 90 HOH HOH . 
E 3 HOH A 46 1046 52 HOH HOH . 
E 3 HOH A 47 1047 39 HOH HOH . 
E 3 HOH A 48 1048 49 HOH HOH . 
E 3 HOH A 49 1049 18 HOH HOH . 
E 3 HOH A 50 1050 54 HOH HOH . 
F 3 HOH B 1 1001 34 HOH HOH . 
F 3 HOH B 2 1002 36 HOH HOH . 
F 3 HOH B 3 1003 29 HOH HOH . 
F 3 HOH B 4 1004 31 HOH HOH . 
F 3 HOH B 5 1005 55 HOH HOH . 
F 3 HOH B 6 1006 35 HOH HOH . 
F 3 HOH B 7 1007 1 HOH HOH . 
F 3 HOH B 8 1008 61 HOH HOH . 
F 3 HOH B 9 1009 10 HOH HOH . 
F 3 HOH B 10 1010 17 HOH HOH . 
F 3 HOH B 11 1011 12 HOH HOH . 
F 3 HOH B 12 1012 32 HOH HOH . 
F 3 HOH B 13 1013 13 HOH HOH . 
F 3 HOH B 14 1014 44 HOH HOH . 
F 3 HOH B 15 1015 57 HOH HOH . 
F 3 HOH B 16 1016 46 HOH HOH . 
F 3 HOH B 17 1017 75 HOH HOH . 
F 3 HOH B 18 1018 15 HOH HOH . 
F 3 HOH B 19 1019 68 HOH HOH . 
F 3 HOH B 20 1020 33 HOH HOH . 
F 3 HOH B 21 1021 81 HOH HOH . 
F 3 HOH B 22 1022 6 HOH HOH . 
F 3 HOH B 23 1023 63 HOH HOH . 
F 3 HOH B 24 1024 74 HOH HOH . 
F 3 HOH B 25 1025 21 HOH HOH . 
F 3 HOH B 26 1026 86 HOH HOH . 
F 3 HOH B 27 1027 22 HOH HOH . 
F 3 HOH B 28 1028 78 HOH HOH . 
F 3 HOH B 29 1029 28 HOH HOH . 
F 3 HOH B 30 1030 38 HOH HOH . 
F 3 HOH B 31 1031 70 HOH HOH . 
F 3 HOH B 32 1032 54 HOH HOH . 
F 3 HOH B 33 1033 5 HOH HOH . 
F 3 HOH B 34 1034 83 HOH HOH . 
F 3 HOH B 35 1035 116 HOH HOH . 
F 3 HOH B 36 1036 50 HOH HOH . 
F 3 HOH B 37 1037 48 HOH HOH . 
F 3 HOH B 38 1038 82 HOH HOH . 
F 3 HOH B 39 1039 7 HOH HOH . 
F 3 HOH B 40 1040 5 HOH HOH . 
F 3 HOH B 41 1041 47 HOH HOH . 
F 3 HOH B 42 1042 64 HOH HOH . 
F 3 HOH B 43 1043 22 HOH HOH . 
F 3 HOH B 44 1044 59 HOH HOH . 
F 3 HOH B 45 1045 65 HOH HOH . 
F 3 HOH B 46 1046 24 HOH HOH . 
F 3 HOH B 47 1047 26 HOH HOH . 
F 3 HOH B 48 1048 72 HOH HOH . 
F 3 HOH B 49 1049 91 HOH HOH . 
F 3 HOH B 50 1050 117 HOH HOH . 
F 3 HOH B 51 1051 8 HOH HOH . 
F 3 HOH B 52 1052 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . D 2 -43.971 18.523 18.741 1 111.98 ? C1 MLA 901 B 1 
HETATM 2 O O1B MLA . . . D 2 -43.425 18.671 17.672 1 111.75 ? O1B MLA 901 B 1 
HETATM 3 C C2 MLA . . . D 2 -45.468 18.607 18.94 1 113.37 ? C2 MLA 901 B 1 
HETATM 4 C C3 MLA . . . D 2 -45.931 17.786 20.122 1 114.44 ? C3 MLA 901 B 1 
HETATM 5 O O3A MLA . . . D 2 -46.417 16.685 19.99 1 114.98 ? O3A MLA 901 B 1 
HETATM 6 O O3B MLA . . . D 2 -45.69 18.323 21.303 1 114.43 ? O3B MLA 901 B 1 
HETATM 7 H HC21 MLA . . . D 2 -45.963 18.252 18.037 0 168.03 ? HC21 MLA 901 B 1 
HETATM 8 H HC22 MLA . . . D 2 -45.797 19.64 19.042 0 168.05 ? HC22 MLA 901 B 1 
HETATM 9 H H3B MLA . . . D 2 -45.232 17.708 21.934 0 171.34 ? H3B MLA 901 B 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#