data_7AGU # _model_server_result.job_id 0o8Cfu3HCd4WgZAweeZAqA _model_server_result.datetime_utc '2024-11-24 00:02:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7agu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 7AGU # _exptl.entry_id 7AGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYLMALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AGU _cell.length_a 148.15 _cell.length_b 157.975 _cell.length_c 116.299 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 477 1_555 B SG CYS 43 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A OG SER 189 A SER 623 1_555 C C DXX . A DXX 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id DXX _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYLMALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DXX sing 83 n n C1 OXT DXX doub 84 n n C1 CA DXX sing 85 n n O1 H1 DXX sing 86 n n CA CB DXX sing 87 n n CA C DXX sing 88 n n CA HA DXX sing 89 n n CB HB1 DXX sing 90 n n CB HB2 DXX sing 91 n n CB HB3 DXX sing 92 n n C O DXX doub 93 n n C O2 DXX sing 94 n n O2 HO2 DXX sing 95 n n # _atom_sites.entry_id 7AGU _atom_sites.fract_transf_matrix[1][1] 0.00675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DXX A 1 901 901 DXX MMA . D 3 EDO B 1 901 901 EDO EDO . E 4 HOH A 1 1001 9 HOH HOH . E 4 HOH A 2 1002 2 HOH HOH . E 4 HOH A 3 1003 26 HOH HOH . E 4 HOH A 4 1004 17 HOH HOH . E 4 HOH A 5 1005 4 HOH HOH . E 4 HOH A 6 1006 6 HOH HOH . E 4 HOH A 7 1007 29 HOH HOH . E 4 HOH A 8 1008 1 HOH HOH . E 4 HOH A 9 1009 14 HOH HOH . E 4 HOH A 10 1010 18 HOH HOH . E 4 HOH A 11 1011 3 HOH HOH . E 4 HOH A 12 1012 20 HOH HOH . E 4 HOH A 13 1013 19 HOH HOH . E 4 HOH A 14 1014 13 HOH HOH . E 4 HOH A 15 1015 24 HOH HOH . E 4 HOH A 16 1016 15 HOH HOH . F 4 HOH B 1 1001 28 HOH HOH . F 4 HOH B 2 1002 25 HOH HOH . F 4 HOH B 3 1003 23 HOH HOH . F 4 HOH B 4 1004 11 HOH HOH . F 4 HOH B 5 1005 21 HOH HOH . F 4 HOH B 6 1006 12 HOH HOH . F 4 HOH B 7 1007 19 HOH HOH . F 4 HOH B 8 1008 16 HOH HOH . F 4 HOH B 9 1009 27 HOH HOH . F 4 HOH B 10 1010 22 HOH HOH . F 4 HOH B 11 1011 7 HOH HOH . F 4 HOH B 12 1012 8 HOH HOH . F 4 HOH B 13 1013 20 HOH HOH . F 4 HOH B 14 1014 5 HOH HOH . F 4 HOH B 15 1015 12 HOH HOH . F 4 HOH B 16 1016 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DXX . . . C 2 43.62 -38.467 -4.136 1 115.42 ? C1 DXX 901 A 1 HETATM 2 O O1 DXX . . . C 2 44.251 -37.391 -4.561 1 114.74 ? O1 DXX 901 A 1 HETATM 3 O OXT DXX . . . C 2 43.817 -38.974 -3.047 1 114.79 ? OXT DXX 901 A 1 HETATM 4 C CA DXX . . . C 2 42.497 -38.971 -5.026 1 116.72 ? CA DXX 901 A 1 HETATM 5 C CB DXX . . . C 2 42.803 -39.144 -6.522 1 117.36 ? CB DXX 901 A 1 HETATM 6 C C DXX . . . C 2 41.359 -37.987 -4.829 1 116.68 ? C DXX 901 A 1 HETATM 7 O O DXX . . . C 2 41.517 -36.812 -4.665 1 116.9 ? O DXX 901 A 1 HETATM 8 H H1 DXX . . . C 2 44.97 -37.116 -3.933 0 173.04 ? H1 DXX 901 A 1 HETATM 9 H HA DXX . . . C 2 42.224 -39.966 -4.667 0 174.21 ? HA DXX 901 A 1 HETATM 10 H HB1 DXX . . . C 2 41.934 -39.515 -7.064 0 174.23 ? HB1 DXX 901 A 1 HETATM 11 H HB2 DXX . . . C 2 43.096 -38.204 -6.987 0 174.24 ? HB2 DXX 901 A 1 HETATM 12 H HB3 DXX . . . C 2 43.612 -39.853 -6.69 0 175.74 ? HB3 DXX 901 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #