data_7AGU # _model_server_result.job_id 9vxRJV9pSUk-D0GMUjvsjg _model_server_result.datetime_utc '2024-11-14 13:18:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7agu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 7AGU # _exptl.entry_id 7AGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AGU _cell.length_a 148.15 _cell.length_b 157.975 _cell.length_c 116.299 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 477 1_555 B SG CYS 43 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A OG SER 189 A SER 623 1_555 C C DXX . A DXX 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 96 n n C1 C2 EDO sing 97 n n C1 H11 EDO sing 98 n n C1 H12 EDO sing 99 n n O1 HO1 EDO sing 100 n n C2 O2 EDO sing 101 n n C2 H21 EDO sing 102 n n C2 H22 EDO sing 103 n n O2 HO2 EDO sing 104 n n # _atom_sites.entry_id 7AGU _atom_sites.fract_transf_matrix[1][1] 0.00675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DXX A 1 901 901 DXX MMA . D 3 EDO B 1 901 901 EDO EDO . E 4 HOH A 1 1001 9 HOH HOH . E 4 HOH A 2 1002 2 HOH HOH . E 4 HOH A 3 1003 26 HOH HOH . E 4 HOH A 4 1004 17 HOH HOH . E 4 HOH A 5 1005 4 HOH HOH . E 4 HOH A 6 1006 6 HOH HOH . E 4 HOH A 7 1007 29 HOH HOH . E 4 HOH A 8 1008 1 HOH HOH . E 4 HOH A 9 1009 14 HOH HOH . E 4 HOH A 10 1010 18 HOH HOH . E 4 HOH A 11 1011 3 HOH HOH . E 4 HOH A 12 1012 20 HOH HOH . E 4 HOH A 13 1013 19 HOH HOH . E 4 HOH A 14 1014 13 HOH HOH . E 4 HOH A 15 1015 24 HOH HOH . E 4 HOH A 16 1016 15 HOH HOH . F 4 HOH B 1 1001 28 HOH HOH . F 4 HOH B 2 1002 25 HOH HOH . F 4 HOH B 3 1003 23 HOH HOH . F 4 HOH B 4 1004 11 HOH HOH . F 4 HOH B 5 1005 21 HOH HOH . F 4 HOH B 6 1006 12 HOH HOH . F 4 HOH B 7 1007 19 HOH HOH . F 4 HOH B 8 1008 16 HOH HOH . F 4 HOH B 9 1009 27 HOH HOH . F 4 HOH B 10 1010 22 HOH HOH . F 4 HOH B 11 1011 7 HOH HOH . F 4 HOH B 12 1012 8 HOH HOH . F 4 HOH B 13 1013 20 HOH HOH . F 4 HOH B 14 1014 5 HOH HOH . F 4 HOH B 15 1015 12 HOH HOH . F 4 HOH B 16 1016 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -45.305 19.111 17.922 1 118.15 ? C1 EDO 901 B 1 HETATM 2 O O1 EDO . . . D 3 -44.096 18.482 17.553 1 117.77 ? O1 EDO 901 B 1 HETATM 3 C C2 EDO . . . D 3 -45.198 19.547 19.395 1 118.82 ? C2 EDO 901 B 1 HETATM 4 O O2 EDO . . . D 3 -45.128 18.344 20.19 1 119.21 ? O2 EDO 901 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #