data_7AH5 # _model_server_result.job_id 1P7lXH45OslNwmY9E8rkkw _model_server_result.datetime_utc '2024-11-05 16:45:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ah5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7AH5 # _exptl.entry_id 7AH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AH5 _cell.length_a 84.988 _cell.length_b 93.106 _cell.length_c 130.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 328 A CYS 308 1_555 B SG CYS 328 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A NE2 HIS 366 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D N03 RCQ . A RCQ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc3 B NE2 HIS 366 B HIS 346 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc4 F FE HEM . B HEM 501 1_555 G N03 RCQ . B RCQ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7AH5 _atom_sites.fract_transf_matrix[1][1] 0.011766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 404 HEM HEM . D 3 RCQ A 1 502 1 RCQ LIG . E 3 RCQ A 1 503 2 RCQ LIG . F 2 HEM B 1 501 404 HEM HEM . G 3 RCQ B 1 502 3 RCQ LIG . H 3 RCQ B 1 503 4 RCQ LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -18.142 27.17 -33.194 1 61.46 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . C 2 -15.774 28.805 -37.097 1 59.27 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . C 2 -14.227 32.686 -34.655 1 50.56 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . C 2 -16.656 31.119 -30.782 1 55.48 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . C 2 -17.511 27.207 -34.416 1 62.65 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . C 2 -17.309 26.097 -35.318 1 63.84 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . C 2 -16.655 26.552 -36.389 1 64.61 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . C 2 -16.418 27.967 -36.213 1 62.48 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . C 2 -16.209 25.73 -37.61 1 69.85 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . C 2 -17.77 24.649 -35.069 1 63.96 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . C 2 -16.811 23.995 -34.086 1 56.87 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . C 2 -15.786 23.218 -34.869 1 67.48 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . C 2 -14.694 22.943 -34.31 1 68.9 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . C 2 -16.057 22.879 -36.052 1 71.34 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . C 2 -15.212 30.021 -36.788 1 60.44 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . C 2 -14.583 30.918 -37.736 1 64.22 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . C 2 -14.167 32.002 -37.064 1 58.58 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . C 2 -14.502 31.802 -35.67 1 54.02 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . C 2 -14.475 30.625 -39.25 1 70.5 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . C 2 -13.416 33.257 -37.574 1 64.56 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . C 2 -12.715 33.302 -38.711 1 63.01 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . C 2 -14.681 32.567 -33.369 1 51.47 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . C 2 -14.273 33.381 -32.245 1 56.07 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . C 2 -14.943 32.964 -31.176 1 58.78 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . C 2 -15.795 31.848 -31.578 1 54.19 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . C 2 -13.261 34.549 -32.252 1 46.74 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . C 2 -14.768 33.6 -29.777 1 59.79 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . C 2 -15.686 33.425 -28.821 1 66.38 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . C 2 -17.209 29.888 -31.07 1 56.96 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . C 2 -17.827 28.982 -30.124 1 59.94 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . C 2 -18.243 27.894 -30.78 1 58.66 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . C 2 -17.895 28.059 -32.173 1 58.86 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . C 2 -17.986 29.243 -28.615 1 57.94 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . C 2 -18.95 26.669 -30.161 1 51.02 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . C 2 -20.394 26.598 -30.636 1 59.22 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . C 2 -21.262 27.445 -29.743 1 66.95 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . C 2 -22.335 27.887 -30.227 1 67.07 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . C 2 -20.889 27.686 -28.563 1 67.01 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . C 2 -16.954 28.33 -34.994 1 55.82 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . C 2 -15.145 30.586 -35.531 1 60.65 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . C 2 -15.607 31.637 -32.932 1 51.02 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . C 2 -17.269 29.283 -32.309 1 54.67 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . C 2 -16.223 29.849 -33.909 1 62.22 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 210 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #