data_7AH6 # _model_server_result.job_id E5yRmcEh5ThDYh8QA_2uOA _model_server_result.datetime_utc '2024-11-22 22:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ah6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7AH6 # _exptl.entry_id 7AH6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AH6 _cell.length_a 85.811 _cell.length_b 91.723 _cell.length_c 127.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AH6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 328 A CYS 308 1_555 B SG CYS 328 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A NE2 HIS 366 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D N8 RCW . A RCW 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc3 C FE HEM . A HEM 501 1_555 D N9 RCW . A RCW 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc4 B NE2 HIS 366 B HIS 346 1_555 G FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc5 G FE HEM . B HEM 501 1_555 H N8 RCW . B RCW 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc6 G FE HEM . B HEM 501 1_555 H N9 RCW . B RCW 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 7AH6 _atom_sites.fract_transf_matrix[1][1] 0.011654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 404 HEM HEM . D 3 RCW A 1 502 1 RCW LIG . E 3 RCW A 1 503 2 RCW LIG . F 4 GOL A 1 504 501 GOL GOL . G 2 HEM B 1 501 404 HEM HEM . H 3 RCW B 1 502 3 RCW LIG . I 3 RCW B 1 503 4 RCW LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -17.222 28.997 -31.872 1 44.79 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . C 2 -14.576 30.987 -35.393 1 46.35 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . C 2 -13.054 34.393 -32.313 1 46.62 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . C 2 -15.682 32.408 -28.754 1 48.14 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . C 2 -16.558 29.166 -33.061 1 48.76 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . C 2 -16.474 28.211 -34.148 1 50.42 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . C 2 -15.74 28.77 -35.117 1 50.5 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . C 2 -15.339 30.092 -34.68 1 49.1 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . C 2 -15.372 28.136 -36.472 1 41.79 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . C 2 -17.12 26.806 -34.181 1 52.84 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . C 2 -16.577 25.929 -33.066 1 54.92 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . C 2 -15.34 25.266 -33.512 1 57.14 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . C 2 -14.613 24.869 -32.589 1 54.44 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . C 2 -15.116 25.225 -34.72 1 62.47 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . C 2 -13.975 32.109 -34.874 1 46.77 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . C 2 -13.198 33.074 -35.622 1 52.77 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . C 2 -12.788 34.028 -34.77 1 57.8 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . C 2 -13.277 33.671 -33.458 1 51.22 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . C 2 -12.962 32.97 -37.143 1 50.73 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . C 2 -11.917 35.288 -35.009 1 50.78 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . C 2 -11.088 35.442 -36.046 1 48.08 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . C 2 -13.57 34.113 -31.073 1 50.34 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . C 2 -13.172 34.761 -29.849 1 50.64 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . C 2 -13.889 34.243 -28.856 1 46.88 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . C 2 -14.768 33.216 -29.409 1 49.08 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . C 2 -12.116 35.879 -29.718 1 50.81 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . C 2 -13.726 34.699 -27.395 1 46.28 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . C 2 -14.735 34.551 -26.542 1 56.74 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . C 2 -16.285 31.279 -29.282 1 50.13 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . C 2 -17.036 30.274 -28.554 1 46.55 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . C 2 -17.458 29.343 -29.406 1 46.88 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . C 2 -16.991 29.709 -30.721 1 46.06 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . C 2 -17.315 30.27 -27.046 1 39.93 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . C 2 -18.295 28.092 -29.058 1 45.86 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . C 2 -19.746 28.349 -29.447 1 43.09 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . C 2 -20.426 29.104 -28.335 1 46.79 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . C 2 -21.193 30.052 -28.64 1 49.5 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . C 2 -20.19 28.766 -27.145 1 45.48 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . C 2 -15.855 30.299 -33.418 1 49.02 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . C 2 -14 32.501 -33.552 1 50.6 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . C 2 -14.539 33.176 -30.772 1 51.31 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . C 2 -16.281 30.892 -30.609 1 46.28 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . C 2 -15.091 31.638 -32.034 1 49.33 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #