data_7AH9 # _model_server_result.job_id jKwMwFdSu_6cG-IYQAlFpA _model_server_result.datetime_utc '2025-07-31 09:08:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ah9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HF","auth_seq_id":201}' # _entry.id 7AH9 # _exptl.entry_id 7AH9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 704.998 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AH9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 153-meric _pdbx_struct_assembly.oligomeric_count 153 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE,UE,VE,WE,XE,YE,ZE,AF,BF,CF,DF,EF,FF,GF,HF,IF,JF,KF _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 XE N N ? 10 HF N N ? 10 IF N N ? 10 JF N N ? 10 KF N N # _chem_comp.formula 'C39 H77 O8 P' _chem_comp.formula_weight 704.998 _chem_comp.id 3PH _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 P 3PH sing 1 n n O13 H13 3PH sing 2 n n P O14 3PH sing 3 n n P O12 3PH doub 4 n n P O11 3PH sing 5 n n O11 C1 3PH sing 6 n n C1 C2 3PH sing 7 n n C1 H11 3PH sing 8 n n C1 H12 3PH sing 9 n n C2 O21 3PH sing 10 n n C2 C3 3PH sing 11 n n C2 H2 3PH sing 12 n n O21 C21 3PH sing 13 n n C21 O22 3PH doub 14 n n C21 C22 3PH sing 15 n n C22 C23 3PH sing 16 n n C22 H221 3PH sing 17 n n C22 H222 3PH sing 18 n n C23 C24 3PH sing 19 n n C23 H231 3PH sing 20 n n C23 H232 3PH sing 21 n n C24 C25 3PH sing 22 n n C24 H241 3PH sing 23 n n C24 H242 3PH sing 24 n n C25 C26 3PH sing 25 n n C25 H251 3PH sing 26 n n C25 H252 3PH sing 27 n n C26 C27 3PH sing 28 n n C26 H261 3PH sing 29 n n C26 H262 3PH sing 30 n n C27 C28 3PH sing 31 n n C27 H271 3PH sing 32 n n C27 H272 3PH sing 33 n n C28 C29 3PH sing 34 n n C28 H281 3PH sing 35 n n C28 H282 3PH sing 36 n n C29 C2A 3PH sing 37 n n C29 H291 3PH sing 38 n n C29 H292 3PH sing 39 n n C2A C2B 3PH sing 40 n n C2A H2A1 3PH sing 41 n n C2A H2A2 3PH sing 42 n n C2B C2C 3PH sing 43 n n C2B H2B1 3PH sing 44 n n C2B H2B2 3PH sing 45 n n C2C C2D 3PH sing 46 n n C2C H2C1 3PH sing 47 n n C2C H2C2 3PH sing 48 n n C2D C2E 3PH sing 49 n n C2D H2D1 3PH sing 50 n n C2D H2D2 3PH sing 51 n n C2E C2F 3PH sing 52 n n C2E H2E1 3PH sing 53 n n C2E H2E2 3PH sing 54 n n C2F C2G 3PH sing 55 n n C2F H2F1 3PH sing 56 n n C2F H2F2 3PH sing 57 n n C2G C2H 3PH sing 58 n n C2G H2G1 3PH sing 59 n n C2G H2G2 3PH sing 60 n n C2H C2I 3PH sing 61 n n C2H H2H1 3PH sing 62 n n C2H H2H2 3PH sing 63 n n C2I H2I1 3PH sing 64 n n C2I H2I2 3PH sing 65 n n C2I H2I3 3PH sing 66 n n C3 O31 3PH sing 67 n n C3 H31 3PH sing 68 n n C3 H32 3PH sing 69 n n O31 C31 3PH sing 70 n n C31 O32 3PH doub 71 n n C31 C32 3PH sing 72 n n C32 C33 3PH sing 73 n n C32 H321 3PH sing 74 n n C32 H322 3PH sing 75 n n C33 C34 3PH sing 76 n n C33 H331 3PH sing 77 n n C33 H332 3PH sing 78 n n C34 C35 3PH sing 79 n n C34 H341 3PH sing 80 n n C34 H342 3PH sing 81 n n C35 C36 3PH sing 82 n n C35 H351 3PH sing 83 n n C35 H352 3PH sing 84 n n C36 C37 3PH sing 85 n n C36 H361 3PH sing 86 n n C36 H362 3PH sing 87 n n C37 C38 3PH sing 88 n n C37 H371 3PH sing 89 n n C37 H372 3PH sing 90 n n C38 C39 3PH sing 91 n n C38 H381 3PH sing 92 n n C38 H382 3PH sing 93 n n C39 C3A 3PH sing 94 n n C39 H391 3PH sing 95 n n C39 H392 3PH sing 96 n n C3A C3B 3PH sing 97 n n C3A H3A1 3PH sing 98 n n C3A H3A2 3PH sing 99 n n C3B C3C 3PH sing 100 n n C3B H3B1 3PH sing 101 n n C3B H3B2 3PH sing 102 n n C3C C3D 3PH sing 103 n n C3C H3C1 3PH sing 104 n n C3C H3C2 3PH sing 105 n n C3D C3E 3PH sing 106 n n C3D H3D1 3PH sing 107 n n C3D H3D2 3PH sing 108 n n C3E C3F 3PH sing 109 n n C3E H3E1 3PH sing 110 n n C3E H3E2 3PH sing 111 n n C3F C3G 3PH sing 112 n n C3F H3F1 3PH sing 113 n n C3F H3F2 3PH sing 114 n n C3G C3H 3PH sing 115 n n C3G H3G1 3PH sing 116 n n C3G H3G2 3PH sing 117 n n C3H C3I 3PH sing 118 n n C3H H3H1 3PH sing 119 n n C3H H3H2 3PH sing 120 n n C3I H3I1 3PH sing 121 n n C3I H3I2 3PH sing 122 n n C3I H3I3 3PH sing 123 n n O14 H77 3PH sing 124 n n # _atom_sites.entry_id 7AH9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code XE 10 3PH 1A 1 401 401 3PH 3PH . YE 11 LDA 1A 1 402 301 LDA LDA . ZE 11 LDA 1D 1 301 301 LDA LDA . AF 11 LDA 1G 1 201 201 LDA LDA . BF 11 LDA 1H 1 101 101 LDA LDA . CF 11 LDA 1I 1 501 501 LDA LDA . DF 11 LDA 1I 1 502 401 LDA LDA . EF 11 LDA 1I 1 503 101 LDA LDA . FF 11 LDA 1J 1 401 401 LDA LDA . GF 11 LDA 1J 1 402 201 LDA LDA . HF 10 3PH 1L 1 201 201 3PH 3PH . IF 10 3PH 1M 1 201 201 3PH 3PH . JF 10 3PH 1N 1 601 601 3PH 3PH . KF 10 3PH 1P 1 201 201 3PH 3PH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 3PH . . . HF 10 303.069 339.95 170.092 1 75.71 ? O13 3PH 201 1L 1 HETATM 2 P P 3PH . . . HF 10 304.397 339.344 170.469 1 75.71 ? P 3PH 201 1L 1 HETATM 3 O O14 3PH . . . HF 10 304.388 339.032 171.943 1 75.71 ? O14 3PH 201 1L 1 HETATM 4 O O12 3PH . . . HF 10 304.612 338.084 169.676 1 75.71 ? O12 3PH 201 1L 1 HETATM 5 O O11 3PH . . . HF 10 305.62 340.39 170.133 1 75.71 ? O11 3PH 201 1L 1 HETATM 6 C C1 3PH . . . HF 10 306.9 340.087 170.595 1 75.71 ? C1 3PH 201 1L 1 HETATM 7 C C2 3PH . . . HF 10 307.93 340.392 169.511 1 75.71 ? C2 3PH 201 1L 1 HETATM 8 O O21 3PH . . . HF 10 307.812 341.698 169.037 1 75.71 ? O21 3PH 201 1L 1 HETATM 9 C C21 3PH . . . HF 10 309.012 342.251 168.576 1 75.71 ? C21 3PH 201 1L 1 HETATM 10 O O22 3PH . . . HF 10 309.822 342.633 169.336 1 75.71 ? O22 3PH 201 1L 1 HETATM 11 C C22 3PH . . . HF 10 309.283 342.386 167.089 1 75.71 ? C22 3PH 201 1L 1 HETATM 12 C C23 3PH . . . HF 10 310.42 343.366 166.811 1 75.71 ? C23 3PH 201 1L 1 HETATM 13 C C24 3PH . . . HF 10 310.528 343.488 165.297 1 75.71 ? C24 3PH 201 1L 1 HETATM 14 C C25 3PH . . . HF 10 311.745 344.284 164.84 1 75.71 ? C25 3PH 201 1L 1 HETATM 15 C C26 3PH . . . HF 10 312.192 343.67 163.517 1 75.71 ? C26 3PH 201 1L 1 HETATM 16 C C27 3PH . . . HF 10 313.235 344.516 162.798 1 75.71 ? C27 3PH 201 1L 1 HETATM 17 C C28 3PH . . . HF 10 312.676 345.043 161.481 1 75.71 ? C28 3PH 201 1L 1 HETATM 18 C C29 3PH . . . HF 10 313.659 346.039 160.873 1 75.71 ? C29 3PH 201 1L 1 HETATM 19 C C2A 3PH . . . HF 10 313.255 346.367 159.438 1 75.71 ? C2A 3PH 201 1L 1 HETATM 20 C C2B 3PH . . . HF 10 313.078 347.865 159.215 1 75.71 ? C2B 3PH 201 1L 1 HETATM 21 C C2C 3PH . . . HF 10 312.686 348.088 157.755 1 75.71 ? C2C 3PH 201 1L 1 HETATM 22 C C2D 3PH . . . HF 10 312.4 349.562 157.486 1 75.71 ? C2D 3PH 201 1L 1 HETATM 23 C C3 3PH . . . HF 10 307.694 339.467 168.324 1 75.71 ? C3 3PH 201 1L 1 HETATM 24 O O31 3PH . . . HF 10 308.517 338.345 168.4 1 75.71 ? O31 3PH 201 1L 1 HETATM 25 C C31 3PH . . . HF 10 308.561 337.654 167.189 1 75.71 ? C31 3PH 201 1L 1 HETATM 26 O O32 3PH . . . HF 10 307.74 336.847 166.923 1 75.71 ? O32 3PH 201 1L 1 HETATM 27 C C32 3PH . . . HF 10 309.686 337.961 166.214 1 75.71 ? C32 3PH 201 1L 1 HETATM 28 C C33 3PH . . . HF 10 309.183 338.063 164.784 1 75.71 ? C33 3PH 201 1L 1 HETATM 29 C C34 3PH . . . HF 10 310.403 338.096 163.873 1 75.71 ? C34 3PH 201 1L 1 HETATM 30 C C35 3PH . . . HF 10 310.193 339.078 162.734 1 75.71 ? C35 3PH 201 1L 1 HETATM 31 C C36 3PH . . . HF 10 311.284 338.9 161.685 1 75.71 ? C36 3PH 201 1L 1 HETATM 32 C C37 3PH . . . HF 10 311.315 340.158 160.826 1 75.71 ? C37 3PH 201 1L 1 HETATM 33 C C38 3PH . . . HF 10 311.32 339.76 159.353 1 75.71 ? C38 3PH 201 1L 1 HETATM 34 C C39 3PH . . . HF 10 311.498 341 158.482 1 75.71 ? C39 3PH 201 1L 1 HETATM 35 H H11 3PH . . . HF 10 307.117 340.68 171.477 1 75.71 ? H11 3PH 201 1L 1 HETATM 36 H H12 3PH . . . HF 10 306.951 339.032 170.842 1 75.71 ? H12 3PH 201 1L 1 HETATM 37 H H2 3PH . . . HF 10 308.928 340.235 169.903 1 75.71 ? H2 3PH 201 1L 1 HETATM 38 H H221 3PH . . . HF 10 309.534 341.415 166.676 1 75.71 ? H221 3PH 201 1L 1 HETATM 39 H H222 3PH . . . HF 10 308.388 342.737 166.587 1 75.71 ? H222 3PH 201 1L 1 HETATM 40 H H231 3PH . . . HF 10 311.353 342.989 167.217 1 75.71 ? H231 3PH 201 1L 1 HETATM 41 H H232 3PH . . . HF 10 310.212 344.333 167.257 1 75.71 ? H232 3PH 201 1L 1 HETATM 42 H H241 3PH . . . HF 10 310.594 342.487 164.883 1 75.71 ? H241 3PH 201 1L 1 HETATM 43 H H242 3PH . . . HF 10 309.633 343.964 164.909 1 75.71 ? H242 3PH 201 1L 1 HETATM 44 H H251 3PH . . . HF 10 312.543 344.206 165.57 1 75.71 ? H251 3PH 201 1L 1 HETATM 45 H H252 3PH . . . HF 10 311.501 345.334 164.718 1 75.71 ? H252 3PH 201 1L 1 HETATM 46 H H261 3PH . . . HF 10 311.324 343.594 162.87 1 75.71 ? H261 3PH 201 1L 1 HETATM 47 H H262 3PH . . . HF 10 312.596 342.68 163.703 1 75.71 ? H262 3PH 201 1L 1 HETATM 48 H H271 3PH . . . HF 10 314.12 343.92 162.601 1 75.71 ? H271 3PH 201 1L 1 HETATM 49 H H272 3PH . . . HF 10 313.514 345.351 163.433 1 75.71 ? H272 3PH 201 1L 1 HETATM 50 H H281 3PH . . . HF 10 312.517 344.22 160.792 1 75.71 ? H281 3PH 201 1L 1 HETATM 51 H H282 3PH . . . HF 10 311.726 345.536 161.658 1 75.71 ? H282 3PH 201 1L 1 HETATM 52 H H291 3PH . . . HF 10 314.663 345.626 160.88 1 75.71 ? H291 3PH 201 1L 1 HETATM 53 H H292 3PH . . . HF 10 313.651 346.946 161.468 1 75.71 ? H292 3PH 201 1L 1 HETATM 54 H H2A1 3PH . . . HF 10 312.325 345.86 159.201 1 75.71 ? H2A1 3PH 201 1L 1 HETATM 55 H H2A2 3PH . . . HF 10 314.023 346.007 158.761 1 75.71 ? H2A2 3PH 201 1L 1 HETATM 56 H H2B1 3PH . . . HF 10 314.003 348.387 159.436 1 75.71 ? H2B1 3PH 201 1L 1 HETATM 57 H H2B2 3PH . . . HF 10 312.296 348.24 159.867 1 75.71 ? H2B2 3PH 201 1L 1 HETATM 58 H H2C1 3PH . . . HF 10 311.797 347.507 157.535 1 75.71 ? H2C1 3PH 201 1L 1 HETATM 59 H H2C2 3PH . . . HF 10 313.493 347.751 157.113 1 75.71 ? H2C2 3PH 201 1L 1 HETATM 60 H H2D1 3PH . . . HF 10 312.04 349.681 156.47 1 75.71 ? H2D1 3PH 201 1L 1 HETATM 61 H H2D2 3PH . . . HF 10 311.646 349.917 158.181 1 75.71 ? H2D2 3PH 201 1L 1 HETATM 62 H H31 3PH . . . HF 10 306.655 339.154 168.295 1 75.71 ? H31 3PH 201 1L 1 HETATM 63 H H32 3PH . . . HF 10 307.925 340.008 167.413 1 75.71 ? H32 3PH 201 1L 1 HETATM 64 H H321 3PH . . . HF 10 310.427 337.17 166.266 1 75.71 ? H321 3PH 201 1L 1 HETATM 65 H H322 3PH . . . HF 10 310.185 338.882 166.497 1 75.71 ? H322 3PH 201 1L 1 HETATM 66 H H331 3PH . . . HF 10 308.613 338.978 164.665 1 75.71 ? H331 3PH 201 1L 1 HETATM 67 H H332 3PH . . . HF 10 308.56 337.208 164.542 1 75.71 ? H332 3PH 201 1L 1 HETATM 68 H H341 3PH . . . HF 10 310.591 337.107 163.47 1 75.71 ? H341 3PH 201 1L 1 HETATM 69 H H342 3PH . . . HF 10 311.278 338.391 164.443 1 75.71 ? H342 3PH 201 1L 1 # _model_server_stats.io_time_ms 130 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 932 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 69 #