data_7AH9
#
_model_server_result.job_id            L-uoSgMqwSQnNHQwHlF4Qw 
_model_server_result.datetime_utc      '2025-08-01 05:49:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ah9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JF","auth_seq_id":601}' 
#
_entry.id    7AH9 
#
_exptl.entry_id    7AH9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              704.998 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AH9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AH9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    153-meric 
_pdbx_struct_assembly.oligomeric_count      153 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE,UE,VE,WE,XE,YE,ZE,AF,BF,CF,DF,EF,FF,GF,HF,IF,JF,KF 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 XE N N 
? 10 HF N N 
? 10 IF N N 
? 10 JF N N 
? 10 KF N N 
#
_chem_comp.formula           'C39 H77 O8 P' 
_chem_comp.formula_weight    704.998 
_chem_comp.id                3PH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PHOSPHATIDIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O13 P 3PH sing 1 n n 
O13 H13 3PH sing 2 n n 
P O14 3PH sing 3 n n 
P O12 3PH doub 4 n n 
P O11 3PH sing 5 n n 
O11 C1 3PH sing 6 n n 
C1 C2 3PH sing 7 n n 
C1 H11 3PH sing 8 n n 
C1 H12 3PH sing 9 n n 
C2 O21 3PH sing 10 n n 
C2 C3 3PH sing 11 n n 
C2 H2 3PH sing 12 n n 
O21 C21 3PH sing 13 n n 
C21 O22 3PH doub 14 n n 
C21 C22 3PH sing 15 n n 
C22 C23 3PH sing 16 n n 
C22 H221 3PH sing 17 n n 
C22 H222 3PH sing 18 n n 
C23 C24 3PH sing 19 n n 
C23 H231 3PH sing 20 n n 
C23 H232 3PH sing 21 n n 
C24 C25 3PH sing 22 n n 
C24 H241 3PH sing 23 n n 
C24 H242 3PH sing 24 n n 
C25 C26 3PH sing 25 n n 
C25 H251 3PH sing 26 n n 
C25 H252 3PH sing 27 n n 
C26 C27 3PH sing 28 n n 
C26 H261 3PH sing 29 n n 
C26 H262 3PH sing 30 n n 
C27 C28 3PH sing 31 n n 
C27 H271 3PH sing 32 n n 
C27 H272 3PH sing 33 n n 
C28 C29 3PH sing 34 n n 
C28 H281 3PH sing 35 n n 
C28 H282 3PH sing 36 n n 
C29 C2A 3PH sing 37 n n 
C29 H291 3PH sing 38 n n 
C29 H292 3PH sing 39 n n 
C2A C2B 3PH sing 40 n n 
C2A H2A1 3PH sing 41 n n 
C2A H2A2 3PH sing 42 n n 
C2B C2C 3PH sing 43 n n 
C2B H2B1 3PH sing 44 n n 
C2B H2B2 3PH sing 45 n n 
C2C C2D 3PH sing 46 n n 
C2C H2C1 3PH sing 47 n n 
C2C H2C2 3PH sing 48 n n 
C2D C2E 3PH sing 49 n n 
C2D H2D1 3PH sing 50 n n 
C2D H2D2 3PH sing 51 n n 
C2E C2F 3PH sing 52 n n 
C2E H2E1 3PH sing 53 n n 
C2E H2E2 3PH sing 54 n n 
C2F C2G 3PH sing 55 n n 
C2F H2F1 3PH sing 56 n n 
C2F H2F2 3PH sing 57 n n 
C2G C2H 3PH sing 58 n n 
C2G H2G1 3PH sing 59 n n 
C2G H2G2 3PH sing 60 n n 
C2H C2I 3PH sing 61 n n 
C2H H2H1 3PH sing 62 n n 
C2H H2H2 3PH sing 63 n n 
C2I H2I1 3PH sing 64 n n 
C2I H2I2 3PH sing 65 n n 
C2I H2I3 3PH sing 66 n n 
C3 O31 3PH sing 67 n n 
C3 H31 3PH sing 68 n n 
C3 H32 3PH sing 69 n n 
O31 C31 3PH sing 70 n n 
C31 O32 3PH doub 71 n n 
C31 C32 3PH sing 72 n n 
C32 C33 3PH sing 73 n n 
C32 H321 3PH sing 74 n n 
C32 H322 3PH sing 75 n n 
C33 C34 3PH sing 76 n n 
C33 H331 3PH sing 77 n n 
C33 H332 3PH sing 78 n n 
C34 C35 3PH sing 79 n n 
C34 H341 3PH sing 80 n n 
C34 H342 3PH sing 81 n n 
C35 C36 3PH sing 82 n n 
C35 H351 3PH sing 83 n n 
C35 H352 3PH sing 84 n n 
C36 C37 3PH sing 85 n n 
C36 H361 3PH sing 86 n n 
C36 H362 3PH sing 87 n n 
C37 C38 3PH sing 88 n n 
C37 H371 3PH sing 89 n n 
C37 H372 3PH sing 90 n n 
C38 C39 3PH sing 91 n n 
C38 H381 3PH sing 92 n n 
C38 H382 3PH sing 93 n n 
C39 C3A 3PH sing 94 n n 
C39 H391 3PH sing 95 n n 
C39 H392 3PH sing 96 n n 
C3A C3B 3PH sing 97 n n 
C3A H3A1 3PH sing 98 n n 
C3A H3A2 3PH sing 99 n n 
C3B C3C 3PH sing 100 n n 
C3B H3B1 3PH sing 101 n n 
C3B H3B2 3PH sing 102 n n 
C3C C3D 3PH sing 103 n n 
C3C H3C1 3PH sing 104 n n 
C3C H3C2 3PH sing 105 n n 
C3D C3E 3PH sing 106 n n 
C3D H3D1 3PH sing 107 n n 
C3D H3D2 3PH sing 108 n n 
C3E C3F 3PH sing 109 n n 
C3E H3E1 3PH sing 110 n n 
C3E H3E2 3PH sing 111 n n 
C3F C3G 3PH sing 112 n n 
C3F H3F1 3PH sing 113 n n 
C3F H3F2 3PH sing 114 n n 
C3G C3H 3PH sing 115 n n 
C3G H3G1 3PH sing 116 n n 
C3G H3G2 3PH sing 117 n n 
C3H C3I 3PH sing 118 n n 
C3H H3H1 3PH sing 119 n n 
C3H H3H2 3PH sing 120 n n 
C3I H3I1 3PH sing 121 n n 
C3I H3I2 3PH sing 122 n n 
C3I H3I3 3PH sing 123 n n 
O14 H77 3PH sing 124 n n 
#
_atom_sites.entry_id                     7AH9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
XE 10 3PH 1A 1 401 401 3PH 3PH . 
YE 11 LDA 1A 1 402 301 LDA LDA . 
ZE 11 LDA 1D 1 301 301 LDA LDA . 
AF 11 LDA 1G 1 201 201 LDA LDA . 
BF 11 LDA 1H 1 101 101 LDA LDA . 
CF 11 LDA 1I 1 501 501 LDA LDA . 
DF 11 LDA 1I 1 502 401 LDA LDA . 
EF 11 LDA 1I 1 503 101 LDA LDA . 
FF 11 LDA 1J 1 401 401 LDA LDA . 
GF 11 LDA 1J 1 402 201 LDA LDA . 
HF 10 3PH 1L 1 201 201 3PH 3PH . 
IF 10 3PH 1M 1 201 201 3PH 3PH . 
JF 10 3PH 1N 1 601 601 3PH 3PH . 
KF 10 3PH 1P 1 201 201 3PH 3PH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O13 3PH . . . JF 10 340.84 301.272 179.94 1 77.88 ? O13 3PH 601 1N 1 
HETATM 2 P P 3PH . . . JF 10 340.017 302.235 180.757 1 77.88 ? P 3PH 601 1N 1 
HETATM 3 O O14 3PH . . . JF 10 339.541 301.55 182.011 1 77.88 ? O14 3PH 601 1N 1 
HETATM 4 O O12 3PH . . . JF 10 340.854 303.428 181.139 1 77.88 ? O12 3PH 601 1N 1 
HETATM 5 O O11 3PH . . . JF 10 338.731 302.73 179.865 1 77.88 ? O11 3PH 601 1N 1 
HETATM 6 C C1 3PH . . . JF 10 338.28 304.04 180.014 1 77.88 ? C1 3PH 601 1N 1 
HETATM 7 C C2 3PH . . . JF 10 337.619 304.502 178.722 1 77.88 ? C2 3PH 601 1N 1 
HETATM 8 O O21 3PH . . . JF 10 336.921 303.433 178.169 1 77.88 ? O21 3PH 601 1N 1 
HETATM 9 C C21 3PH . . . JF 10 335.609 303.724 177.808 1 77.88 ? C21 3PH 601 1N 1 
HETATM 10 O O22 3PH . . . JF 10 334.816 303.969 178.635 1 77.88 ? O22 3PH 601 1N 1 
HETATM 11 C C22 3PH . . . JF 10 335.176 303.728 176.354 1 77.88 ? C22 3PH 601 1N 1 
HETATM 12 C C23 3PH . . . JF 10 333.893 304.529 176.198 1 77.88 ? C23 3PH 601 1N 1 
HETATM 13 C C24 3PH . . . JF 10 333.495 304.484 174.732 1 77.88 ? C24 3PH 601 1N 1 
HETATM 14 C C25 3PH . . . JF 10 332.186 305.231 174.533 1 77.88 ? C25 3PH 601 1N 1 
HETATM 15 C C26 3PH . . . JF 10 332.123 305.842 173.135 1 77.88 ? C26 3PH 601 1N 1 
HETATM 16 C C27 3PH . . . JF 10 331.354 304.958 172.159 1 77.88 ? C27 3PH 601 1N 1 
HETATM 17 C C28 3PH . . . JF 10 331.728 305.359 170.728 1 77.88 ? C28 3PH 601 1N 1 
HETATM 18 C C29 3PH . . . JF 10 330.605 306.043 169.949 1 77.88 ? C29 3PH 601 1N 1 
HETATM 19 C C2A 3PH . . . JF 10 329.292 305.26 169.913 1 77.88 ? C2A 3PH 601 1N 1 
HETATM 20 C C2B 3PH . . . JF 10 329.417 304.096 168.942 1 77.88 ? C2B 3PH 601 1N 1 
HETATM 21 C C2C 3PH . . . JF 10 328.346 304.231 167.864 1 77.88 ? C2C 3PH 601 1N 1 
HETATM 22 C C3 3PH . . . JF 10 338.674 304.954 177.721 1 77.88 ? C3 3PH 601 1N 1 
HETATM 23 O O31 3PH . . . JF 10 338.372 306.243 177.285 1 77.88 ? O31 3PH 601 1N 1 
HETATM 24 C C31 3PH . . . JF 10 339.163 306.654 176.215 1 77.88 ? C31 3PH 601 1N 1 
HETATM 25 O O32 3PH . . . JF 10 340.155 307.26 176.413 1 77.88 ? O32 3PH 601 1N 1 
HETATM 26 C C32 3PH . . . JF 10 338.736 306.314 174.792 1 77.88 ? C32 3PH 601 1N 1 
HETATM 27 C C33 3PH . . . JF 10 337.789 307.392 174.287 1 77.88 ? C33 3PH 601 1N 1 
HETATM 28 C C34 3PH . . . JF 10 337.866 307.522 172.771 1 77.88 ? C34 3PH 601 1N 1 
HETATM 29 C C35 3PH . . . JF 10 336.601 306.951 172.153 1 77.88 ? C35 3PH 601 1N 1 
HETATM 30 C C36 3PH . . . JF 10 336.404 307.642 170.812 1 77.88 ? C36 3PH 601 1N 1 
HETATM 31 C C37 3PH . . . JF 10 334.917 307.698 170.5 1 77.88 ? C37 3PH 601 1N 1 
HETATM 32 C C38 3PH . . . JF 10 334.724 308 169.02 1 77.88 ? C38 3PH 601 1N 1 
HETATM 33 C C39 3PH . . . JF 10 335.646 307.121 168.185 1 77.88 ? C39 3PH 601 1N 1 
HETATM 34 C C3A 3PH . . . JF 10 334.813 306.342 167.172 1 77.88 ? C3A 3PH 601 1N 1 
HETATM 35 H H11 3PH . . . JF 10 337.563 304.081 180.828 1 77.88 ? H11 3PH 601 1N 1 
HETATM 36 H H12 3PH . . . JF 10 339.112 304.694 180.249 1 77.88 ? H12 3PH 601 1N 1 
HETATM 37 H H2 3PH . . . JF 10 336.937 305.318 178.929 1 77.88 ? H2 3PH 601 1N 1 
HETATM 38 H H221 3PH . . . JF 10 335.036 302.712 175.999 1 77.88 ? H221 3PH 601 1N 1 
HETATM 39 H H222 3PH . . . JF 10 335.955 304.186 175.753 1 77.88 ? H222 3PH 601 1N 1 
HETATM 40 H H231 3PH . . . JF 10 334.061 305.559 176.496 1 77.88 ? H231 3PH 601 1N 1 
HETATM 41 H H232 3PH . . . JF 10 333.103 304.106 176.811 1 77.88 ? H232 3PH 601 1N 1 
HETATM 42 H H241 3PH . . . JF 10 334.282 304.943 174.144 1 77.88 ? H241 3PH 601 1N 1 
HETATM 43 H H242 3PH . . . JF 10 333.379 303.455 174.409 1 77.88 ? H242 3PH 601 1N 1 
HETATM 44 H H251 3PH . . . JF 10 332.124 306.028 175.267 1 77.88 ? H251 3PH 601 1N 1 
HETATM 45 H H252 3PH . . . JF 10 331.346 304.562 174.688 1 77.88 ? H252 3PH 601 1N 1 
HETATM 46 H H261 3PH . . . JF 10 331.62 306.801 173.195 1 77.88 ? H261 3PH 601 1N 1 
HETATM 47 H H262 3PH . . . JF 10 333.127 306.006 172.762 1 77.88 ? H262 3PH 601 1N 1 
HETATM 48 H H271 3PH . . . JF 10 330.302 305.111 172.353 1 77.88 ? H271 3PH 601 1N 1 
HETATM 49 H H272 3PH . . . JF 10 331.586 303.912 172.328 1 77.88 ? H272 3PH 601 1N 1 
HETATM 50 H H281 3PH . . . JF 10 331.996 304.454 170.192 1 77.88 ? H281 3PH 601 1N 1 
HETATM 51 H H282 3PH . . . JF 10 332.59 306.016 170.746 1 77.88 ? H282 3PH 601 1N 1 
HETATM 52 H H291 3PH . . . JF 10 330.417 307.006 170.411 1 77.88 ? H291 3PH 601 1N 1 
HETATM 53 H H292 3PH . . . JF 10 330.936 306.209 168.929 1 77.88 ? H292 3PH 601 1N 1 
HETATM 54 H H2A1 3PH . . . JF 10 328.967 304.911 170.884 1 77.88 ? H2A1 3PH 601 1N 1 
HETATM 55 H H2A2 3PH . . . JF 10 328.527 305.925 169.527 1 77.88 ? H2A2 3PH 601 1N 1 
HETATM 56 H H2B1 3PH . . . JF 10 329.275 303.163 169.476 1 77.88 ? H2B1 3PH 601 1N 1 
HETATM 57 H H2B2 3PH . . . JF 10 330.399 304.103 168.481 1 77.88 ? H2B2 3PH 601 1N 1 
HETATM 58 H H2C1 3PH . . . JF 10 327.379 304.396 168.329 1 77.88 ? H2C1 3PH 601 1N 1 
HETATM 59 H H2C2 3PH . . . JF 10 328.586 305.067 167.216 1 77.88 ? H2C2 3PH 601 1N 1 
HETATM 60 H H31 3PH . . . JF 10 338.689 304.279 176.871 1 77.88 ? H31 3PH 601 1N 1 
HETATM 61 H H32 3PH . . . JF 10 339.653 304.954 178.188 1 77.88 ? H32 3PH 601 1N 1 
HETATM 62 H H321 3PH . . . JF 10 339.619 306.26 174.164 1 77.88 ? H321 3PH 601 1N 1 
HETATM 63 H H322 3PH . . . JF 10 338.233 305.353 174.776 1 77.88 ? H322 3PH 601 1N 1 
HETATM 64 H H331 3PH . . . JF 10 336.771 307.155 174.58 1 77.88 ? H331 3PH 601 1N 1 
HETATM 65 H H332 3PH . . . JF 10 338.064 308.341 174.735 1 77.88 ? H332 3PH 601 1N 1 
HETATM 66 H H341 3PH . . . JF 10 338.722 306.975 172.391 1 77.88 ? H341 3PH 601 1N 1 
HETATM 67 H H342 3PH . . . JF 10 337.962 308.567 172.496 1 77.88 ? H342 3PH 601 1N 1 
#
_model_server_stats.io_time_ms              500 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    714 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           67 
#