data_7AHK
#
_model_server_result.job_id            fB_w7_h3JV9RRKg1Oi1xNQ 
_model_server_result.datetime_utc      '2024-11-04 22:59:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ahk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    7AHK 
#
_exptl.entry_id    7AHK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7AHK 
_cell.length_a            152.011 
_cell.length_b            152.011 
_cell.length_c            57.521 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AHK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 76.0055 -131.645388 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 152.011 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O TYR 89 A TYR 89 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc2 A OG1 THR 92 A THR 92 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc3 A OG SER 93 A SER 93 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc4 A O GLY 306 A GLY 306 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc5 A O ASN 310 A ASN 310 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc6 A OD1 ASN 310 A ASN 310 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc7 A OD1 ASP 312 A ASP 312 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc8 A O ASN 401 A ASN 401 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc9 A OD1 ASP 405 A ASP 405 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc10 A OD2 ASP 405 A ASP 405 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc11 B NA NA . A NA 501 1_555 V O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     7AHK 
_atom_sites.fract_transf_matrix[1][1]    0.006578 
_atom_sites.fract_transf_matrix[1][2]    0.003798 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007596 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017385 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 501 2 NA NA . 
C 2 NA A 1 502 3 NA NA . 
D 3 BOG A 1 503 1 BOG BOG . 
E 4 PO4 A 1 504 1 PO4 PO4 . 
F 5 LFA A 1 505 1 LFA LFA . 
G 5 LFA A 1 506 3 LFA LFA . 
H 5 LFA A 1 507 7 LFA LFA . 
I 5 LFA A 1 508 8 LFA LFA . 
J 5 LFA A 1 509 9 LFA LFA . 
K 5 LFA A 1 510 10 LFA LFA . 
L 5 LFA A 1 511 11 LFA LFA . 
M 5 LFA A 1 512 12 LFA LFA . 
N 5 LFA A 1 513 13 LFA LFA . 
O 5 LFA A 1 514 14 LFA LFA . 
P 5 LFA A 1 515 15 LFA LFA . 
Q 5 LFA A 1 516 16 LFA LFA . 
R 6 GOL A 1 517 1 GOL GOL . 
S 6 GOL A 1 518 2 GOL GOL . 
T 7 OLC A 1 519 1 OLC OLC . 
U 7 OLC A 1 520 2 OLC OLC . 
V 8 HOH A 1 601 28 HOH HOH . 
V 8 HOH A 2 602 27 HOH HOH . 
V 8 HOH A 3 603 9 HOH HOH . 
V 8 HOH A 4 604 8 HOH HOH . 
V 8 HOH A 5 605 19 HOH HOH . 
V 8 HOH A 6 606 16 HOH HOH . 
V 8 HOH A 7 607 14 HOH HOH . 
V 8 HOH A 8 608 4 HOH HOH . 
V 8 HOH A 9 609 23 HOH HOH . 
V 8 HOH A 10 610 5 HOH HOH . 
V 8 HOH A 11 611 26 HOH HOH . 
V 8 HOH A 12 612 21 HOH HOH . 
V 8 HOH A 13 613 17 HOH HOH . 
V 8 HOH A 14 614 22 HOH HOH . 
V 8 HOH A 15 615 1 HOH HOH . 
V 8 HOH A 16 616 6 HOH HOH . 
V 8 HOH A 17 617 25 HOH HOH . 
V 8 HOH A 18 618 13 HOH HOH . 
V 8 HOH A 19 619 18 HOH HOH . 
V 8 HOH A 20 620 29 HOH HOH . 
V 8 HOH A 21 621 20 HOH HOH . 
V 8 HOH A 22 622 15 HOH HOH . 
V 8 HOH A 23 623 11 HOH HOH . 
V 8 HOH A 24 624 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . D 3 60.63 -18.285 22.119 1 39.98 ? C1 BOG 503 A 1 
HETATM 2 O O1 BOG . . . D 3 61.352 -17.58 21.107 1 42.3 ? O1 BOG 503 A 1 
HETATM 3 C C2 BOG . . . D 3 61.115 -19.742 22.187 1 41.14 ? C2 BOG 503 A 1 
HETATM 4 O O2 BOG . . . D 3 60.686 -20.49 21.038 1 43.14 ? O2 BOG 503 A 1 
HETATM 5 C C3 BOG . . . D 3 60.624 -20.466 23.437 1 39.68 ? C3 BOG 503 A 1 
HETATM 6 O O3 BOG . . . D 3 61.29 -21.73 23.546 1 37.2 ? O3 BOG 503 A 1 
HETATM 7 C C4 BOG . . . D 3 60.878 -19.606 24.67 1 38.07 ? C4 BOG 503 A 1 
HETATM 8 O O4 BOG . . . D 3 60.358 -20.204 25.858 1 30.87 ? O4 BOG 503 A 1 
HETATM 9 C C5 BOG . . . D 3 60.216 -18.255 24.47 1 37.71 ? C5 BOG 503 A 1 
HETATM 10 O O5 BOG . . . D 3 60.836 -17.602 23.359 1 37.12 ? O5 BOG 503 A 1 
HETATM 11 C C6 BOG . . . D 3 60.323 -17.415 25.735 1 36.77 ? C6 BOG 503 A 1 
HETATM 12 O O6 BOG . . . D 3 61.669 -17.435 26.229 1 44.76 ? O6 BOG 503 A 1 
HETATM 13 C C1' BOG . . . D 3 60.918 -16.229 20.972 1 48.33 ? C1' BOG 503 A 1 
HETATM 14 C C2' BOG . . . D 3 60.882 -15.845 19.498 1 55.96 ? C2' BOG 503 A 1 
HETATM 15 C C3' BOG . . . D 3 61.313 -14.4 19.284 1 54.06 ? C3' BOG 503 A 1 
HETATM 16 C C4' BOG . . . D 3 62.391 -14.29 18.214 1 54.49 ? C4' BOG 503 A 1 
HETATM 17 C C5' BOG . . . D 3 63.425 -13.23 18.583 1 60.04 ? C5' BOG 503 A 1 
HETATM 18 C C6' BOG . . . D 3 64.299 -12.882 17.379 1 62.18 ? C6' BOG 503 A 1 
HETATM 19 C C7' BOG . . . D 3 65.357 -11.836 17.717 1 54.43 ? C7' BOG 503 A 1 
HETATM 20 C C8' BOG . . . D 3 64.751 -10.457 17.84 1 50.86 ? C8' BOG 503 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#