data_7AHK # _model_server_result.job_id TRnOihY24Mh28dUrq2i6rw _model_server_result.datetime_utc '2024-11-04 22:57:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ahk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 7AHK # _exptl.entry_id 7AHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AHK _cell.length_a 152.011 _cell.length_b 152.011 _cell.length_c 57.521 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 76.0055 -131.645388 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 152.011 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 89 A TYR 89 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A OG1 THR 92 A THR 92 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc3 A OG SER 93 A SER 93 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc4 A O GLY 306 A GLY 306 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc5 A O ASN 310 A ASN 310 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc6 A OD1 ASN 310 A ASN 310 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc7 A OD1 ASP 312 A ASP 312 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc8 A O ASN 401 A ASN 401 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc9 A OD1 ASP 405 A ASP 405 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc10 A OD2 ASP 405 A ASP 405 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc11 B NA NA . A NA 501 1_555 V O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 255 n n C1 H11 LFA sing 256 n n C1 H12 LFA sing 257 n n C1 H13 LFA sing 258 n n C2 C3 LFA sing 259 n n C2 H21 LFA sing 260 n n C2 H22 LFA sing 261 n n C3 C4 LFA sing 262 n n C3 H31 LFA sing 263 n n C3 H32 LFA sing 264 n n C4 C5 LFA sing 265 n n C4 H41 LFA sing 266 n n C4 H42 LFA sing 267 n n C5 C6 LFA sing 268 n n C5 H51 LFA sing 269 n n C5 H52 LFA sing 270 n n C6 C7 LFA sing 271 n n C6 H61 LFA sing 272 n n C6 H62 LFA sing 273 n n C7 C8 LFA sing 274 n n C7 H71 LFA sing 275 n n C7 H72 LFA sing 276 n n C8 C9 LFA sing 277 n n C8 H81 LFA sing 278 n n C8 H82 LFA sing 279 n n C9 C10 LFA sing 280 n n C9 H91 LFA sing 281 n n C9 H92 LFA sing 282 n n C10 C11 LFA sing 283 n n C10 H101 LFA sing 284 n n C10 H102 LFA sing 285 n n C11 C12 LFA sing 286 n n C11 H111 LFA sing 287 n n C11 H112 LFA sing 288 n n C12 C13 LFA sing 289 n n C12 H121 LFA sing 290 n n C12 H122 LFA sing 291 n n C13 C14 LFA sing 292 n n C13 H131 LFA sing 293 n n C13 H132 LFA sing 294 n n C14 C15 LFA sing 295 n n C14 H141 LFA sing 296 n n C14 H142 LFA sing 297 n n C15 C16 LFA sing 298 n n C15 H151 LFA sing 299 n n C15 H152 LFA sing 300 n n C16 C17 LFA sing 301 n n C16 H161 LFA sing 302 n n C16 H162 LFA sing 303 n n C17 C18 LFA sing 304 n n C17 H171 LFA sing 305 n n C17 H172 LFA sing 306 n n C18 C19 LFA sing 307 n n C18 H181 LFA sing 308 n n C18 H182 LFA sing 309 n n C19 C20 LFA sing 310 n n C19 H191 LFA sing 311 n n C19 H192 LFA sing 312 n n C20 H201 LFA sing 313 n n C20 H202 LFA sing 314 n n C20 H203 LFA sing 315 n n # _atom_sites.entry_id 7AHK _atom_sites.fract_transf_matrix[1][1] 0.006578 _atom_sites.fract_transf_matrix[1][2] 0.003798 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 2 NA NA . C 2 NA A 1 502 3 NA NA . D 3 BOG A 1 503 1 BOG BOG . E 4 PO4 A 1 504 1 PO4 PO4 . F 5 LFA A 1 505 1 LFA LFA . G 5 LFA A 1 506 3 LFA LFA . H 5 LFA A 1 507 7 LFA LFA . I 5 LFA A 1 508 8 LFA LFA . J 5 LFA A 1 509 9 LFA LFA . K 5 LFA A 1 510 10 LFA LFA . L 5 LFA A 1 511 11 LFA LFA . M 5 LFA A 1 512 12 LFA LFA . N 5 LFA A 1 513 13 LFA LFA . O 5 LFA A 1 514 14 LFA LFA . P 5 LFA A 1 515 15 LFA LFA . Q 5 LFA A 1 516 16 LFA LFA . R 6 GOL A 1 517 1 GOL GOL . S 6 GOL A 1 518 2 GOL GOL . T 7 OLC A 1 519 1 OLC OLC . U 7 OLC A 1 520 2 OLC OLC . V 8 HOH A 1 601 28 HOH HOH . V 8 HOH A 2 602 27 HOH HOH . V 8 HOH A 3 603 9 HOH HOH . V 8 HOH A 4 604 8 HOH HOH . V 8 HOH A 5 605 19 HOH HOH . V 8 HOH A 6 606 16 HOH HOH . V 8 HOH A 7 607 14 HOH HOH . V 8 HOH A 8 608 4 HOH HOH . V 8 HOH A 9 609 23 HOH HOH . V 8 HOH A 10 610 5 HOH HOH . V 8 HOH A 11 611 26 HOH HOH . V 8 HOH A 12 612 21 HOH HOH . V 8 HOH A 13 613 17 HOH HOH . V 8 HOH A 14 614 22 HOH HOH . V 8 HOH A 15 615 1 HOH HOH . V 8 HOH A 16 616 6 HOH HOH . V 8 HOH A 17 617 25 HOH HOH . V 8 HOH A 18 618 13 HOH HOH . V 8 HOH A 19 619 18 HOH HOH . V 8 HOH A 20 620 29 HOH HOH . V 8 HOH A 21 621 20 HOH HOH . V 8 HOH A 22 622 15 HOH HOH . V 8 HOH A 23 623 11 HOH HOH . V 8 HOH A 24 624 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 LFA . . . I 5 48.504 -16.549 15.702 1 48.94 ? C9 LFA 508 A 1 HETATM 2 C C10 LFA . . . I 5 48.621 -16.467 14.18 1 65.78 ? C10 LFA 508 A 1 HETATM 3 C C11 LFA . . . I 5 49.344 -17.684 13.596 1 71.91 ? C11 LFA 508 A 1 HETATM 4 C C12 LFA . . . I 5 50.652 -17.306 12.893 1 66.91 ? C12 LFA 508 A 1 HETATM 5 C C13 LFA . . . I 5 50.878 -18.117 11.619 1 61.84 ? C13 LFA 508 A 1 HETATM 6 C C14 LFA . . . I 5 51.976 -17.508 10.752 1 64.22 ? C14 LFA 508 A 1 HETATM 7 C C15 LFA . . . I 5 51.403 -16.933 9.456 1 71.75 ? C15 LFA 508 A 1 HETATM 8 C C16 LFA . . . I 5 52.038 -15.588 9.107 1 69.77 ? C16 LFA 508 A 1 HETATM 9 C C17 LFA . . . I 5 51.189 -14.785 8.122 1 68.67 ? C17 LFA 508 A 1 HETATM 10 C C18 LFA . . . I 5 51.923 -14.592 6.797 1 77.42 ? C18 LFA 508 A 1 HETATM 11 C C19 LFA . . . I 5 51.44 -13.357 6.038 1 82.92 ? C19 LFA 508 A 1 HETATM 12 C C20 LFA . . . I 5 52.169 -13.197 4.717 1 70.8 ? C20 LFA 508 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #