data_7AHK # _model_server_result.job_id d1Bq_vBTUmhJ8XNGQMvkxw _model_server_result.datetime_utc '2025-04-26 05:38:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ahk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":519}' # _entry.id 7AHK # _exptl.entry_id 7AHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AHK _cell.length_a 152.011 _cell.length_b 152.011 _cell.length_c 57.521 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 76.0055 -131.645388 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 152.011 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 T N N ? 7 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 89 A TYR 89 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A OG1 THR 92 A THR 92 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc3 A OG SER 93 A SER 93 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc4 A O GLY 306 A GLY 306 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc5 A O ASN 310 A ASN 310 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc6 A OD1 ASN 310 A ASN 310 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc7 A OD1 ASP 312 A ASP 312 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc8 A O ASN 401 A ASN 401 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc9 A OD1 ASP 405 A ASP 405 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc10 A OD2 ASP 405 A ASP 405 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc11 B NA NA . A NA 501 1_555 V O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 359 n n C10 C9 OLC doub 360 n n C10 C11 OLC sing 361 n n C9 C8 OLC sing 362 n n C17 C16 OLC sing 363 z n C11 C12 OLC sing 364 n n C8 C7 OLC sing 365 n n C24 C22 OLC sing 366 n n C24 O25 OLC sing 367 n n C16 C15 OLC sing 368 n n C12 C13 OLC sing 369 n n C7 C6 OLC sing 370 n n C15 C14 OLC sing 371 n n C13 C14 OLC sing 372 n n C6 C5 OLC sing 373 n n C5 C4 OLC sing 374 n n C4 C3 OLC sing 375 n n C3 C2 OLC sing 376 n n C2 C1 OLC sing 377 n n C21 C22 OLC sing 378 n n C21 O20 OLC sing 379 n n C1 O19 OLC doub 380 n n C1 O20 OLC sing 381 n n C22 O23 OLC sing 382 n n C18 H18 OLC sing 383 n n C18 H18A OLC sing 384 n n C18 H18B OLC sing 385 n n C10 H10 OLC sing 386 n n C9 H9 OLC sing 387 n n C17 H17 OLC sing 388 n n C17 H17A OLC sing 389 n n C11 H11 OLC sing 390 n n C11 H11A OLC sing 391 n n C8 H8 OLC sing 392 n n C8 H8A OLC sing 393 n n C24 H24 OLC sing 394 n n C24 H24A OLC sing 395 n n C16 H16 OLC sing 396 n n C16 H16A OLC sing 397 n n C12 H12 OLC sing 398 n n C12 H12A OLC sing 399 n n C7 H7 OLC sing 400 n n C7 H7A OLC sing 401 n n C15 H15 OLC sing 402 n n C15 H15A OLC sing 403 n n C13 H13 OLC sing 404 n n C13 H13A OLC sing 405 n n C6 H6 OLC sing 406 n n C6 H6A OLC sing 407 n n C14 H14 OLC sing 408 n n C14 H14A OLC sing 409 n n C5 H5 OLC sing 410 n n C5 H5A OLC sing 411 n n C4 H4 OLC sing 412 n n C4 H4A OLC sing 413 n n C3 H3 OLC sing 414 n n C3 H3A OLC sing 415 n n C2 H2 OLC sing 416 n n C2 H2A OLC sing 417 n n C21 H21 OLC sing 418 n n C21 H21A OLC sing 419 n n C22 H22 OLC sing 420 n n O25 HO25 OLC sing 421 n n O23 HO23 OLC sing 422 n n # _atom_sites.entry_id 7AHK _atom_sites.fract_transf_matrix[1][1] 0.006578 _atom_sites.fract_transf_matrix[1][2] 0.003798 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 2 NA NA . C 2 NA A 1 502 3 NA NA . D 3 BOG A 1 503 1 BOG BOG . E 4 PO4 A 1 504 1 PO4 PO4 . F 5 LFA A 1 505 1 LFA LFA . G 5 LFA A 1 506 3 LFA LFA . H 5 LFA A 1 507 7 LFA LFA . I 5 LFA A 1 508 8 LFA LFA . J 5 LFA A 1 509 9 LFA LFA . K 5 LFA A 1 510 10 LFA LFA . L 5 LFA A 1 511 11 LFA LFA . M 5 LFA A 1 512 12 LFA LFA . N 5 LFA A 1 513 13 LFA LFA . O 5 LFA A 1 514 14 LFA LFA . P 5 LFA A 1 515 15 LFA LFA . Q 5 LFA A 1 516 16 LFA LFA . R 6 GOL A 1 517 1 GOL GOL . S 6 GOL A 1 518 2 GOL GOL . T 7 OLC A 1 519 1 OLC OLC . U 7 OLC A 1 520 2 OLC OLC . V 8 HOH A 1 601 28 HOH HOH . V 8 HOH A 2 602 27 HOH HOH . V 8 HOH A 3 603 9 HOH HOH . V 8 HOH A 4 604 8 HOH HOH . V 8 HOH A 5 605 19 HOH HOH . V 8 HOH A 6 606 16 HOH HOH . V 8 HOH A 7 607 14 HOH HOH . V 8 HOH A 8 608 4 HOH HOH . V 8 HOH A 9 609 23 HOH HOH . V 8 HOH A 10 610 5 HOH HOH . V 8 HOH A 11 611 26 HOH HOH . V 8 HOH A 12 612 21 HOH HOH . V 8 HOH A 13 613 17 HOH HOH . V 8 HOH A 14 614 22 HOH HOH . V 8 HOH A 15 615 1 HOH HOH . V 8 HOH A 16 616 6 HOH HOH . V 8 HOH A 17 617 25 HOH HOH . V 8 HOH A 18 618 13 HOH HOH . V 8 HOH A 19 619 18 HOH HOH . V 8 HOH A 20 620 29 HOH HOH . V 8 HOH A 21 621 20 HOH HOH . V 8 HOH A 22 622 15 HOH HOH . V 8 HOH A 23 623 11 HOH HOH . V 8 HOH A 24 624 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . T 7 68.405 -2.333 6.47 1 71.65 ? C10 OLC 519 A 1 HETATM 2 C C9 OLC . . . T 7 68.901 -1.884 7.629 1 74.46 ? C9 OLC 519 A 1 HETATM 3 C C11 OLC . . . T 7 68.308 -3.808 6.148 1 69.86 ? C11 OLC 519 A 1 HETATM 4 C C8 OLC . . . T 7 69.403 -2.815 8.711 1 70.47 ? C8 OLC 519 A 1 HETATM 5 C C24 OLC . . . T 7 72.968 -1.958 20.399 1 107.53 ? C24 OLC 519 A 1 HETATM 6 C C12 OLC . . . T 7 68.349 -4.009 4.636 1 61.3 ? C12 OLC 519 A 1 HETATM 7 C C7 OLC . . . T 7 70.597 -2.194 9.438 1 69.75 ? C7 OLC 519 A 1 HETATM 8 C C6 OLC . . . T 7 70.393 -2.187 10.953 1 66.65 ? C6 OLC 519 A 1 HETATM 9 C C5 OLC . . . T 7 71.669 -1.812 11.707 1 67.41 ? C5 OLC 519 A 1 HETATM 10 C C4 OLC . . . T 7 71.742 -2.525 13.058 1 66.91 ? C4 OLC 519 A 1 HETATM 11 C C3 OLC . . . T 7 72.483 -1.704 14.114 1 64.65 ? C3 OLC 519 A 1 HETATM 12 C C2 OLC . . . T 7 71.681 -1.591 15.411 1 65.51 ? C2 OLC 519 A 1 HETATM 13 C C21 OLC . . . T 7 71.175 -2.235 18.654 1 94.13 ? C21 OLC 519 A 1 HETATM 14 C C1 OLC . . . T 7 72.591 -1.678 16.62 1 81.78 ? C1 OLC 519 A 1 HETATM 15 C C22 OLC . . . T 7 71.494 -2.28 20.153 1 103.71 ? C22 OLC 519 A 1 HETATM 16 O O19 OLC . . . T 7 73.766 -1.992 16.492 1 89.28 ? O19 OLC 519 A 1 HETATM 17 O O25 OLC . . . T 7 73.266 -2.007 21.802 1 92.01 ? O25 OLC 519 A 1 HETATM 18 O O23 OLC . . . T 7 70.666 -1.353 20.872 1 81.5 ? O23 OLC 519 A 1 HETATM 19 O O20 OLC . . . T 7 72.086 -1.376 17.959 1 96.1 ? O20 OLC 519 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 19 #