data_7AHM
#
_model_server_result.job_id            HOJY5D2IIFQRWDiIelylrQ 
_model_server_result.datetime_utc      '2024-11-15 03:21:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ahm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    7AHM 
#
_exptl.entry_id    7AHM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              658.412 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AHM 
_cell.length_a            190.651 
_cell.length_b            190.651 
_cell.length_c            84.574 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AHM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        93 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E 1 1 
C,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C20 H24 N10 O12 P2' 
_chem_comp.formula_weight    658.412 
_chem_comp.id                2BA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 2BA doub 1 n n 
P O2P 2BA sing 2 n n 
P O5' 2BA sing 3 n n 
P "O3'1" 2BA sing 4 n n 
O5' C5' 2BA sing 5 n n 
C5' C4' 2BA sing 6 n n 
C4' O4' 2BA sing 7 n n 
C4' C3' 2BA sing 8 n n 
O4' C1' 2BA sing 9 n n 
C3' O3' 2BA sing 10 n n 
C3' C2' 2BA sing 11 n n 
O3' P1 2BA sing 12 n n 
C2' O2' 2BA sing 13 n n 
C2' C1' 2BA sing 14 n n 
C1' N9 2BA sing 15 n n 
N9 C8 2BA sing 16 n y 
N9 C4 2BA sing 17 n y 
C8 N7 2BA doub 18 n y 
N7 C5 2BA sing 19 n y 
C5 C6 2BA doub 20 n y 
C5 C4 2BA sing 21 n y 
C6 N6 2BA sing 22 n n 
C6 N1 2BA sing 23 n y 
N1 C2 2BA doub 24 n y 
C2 N3 2BA sing 25 n y 
N3 C4 2BA doub 26 n y 
P1 O1P1 2BA doub 27 n n 
P1 O2P1 2BA sing 28 n n 
P1 "O5'1" 2BA sing 29 n n 
"O5'1" "C5'1" 2BA sing 30 n n 
"C5'1" "C4'1" 2BA sing 31 n n 
"C4'1" "O4'1" 2BA sing 32 n n 
"C4'1" "C3'1" 2BA sing 33 n n 
"O4'1" "C1'1" 2BA sing 34 n n 
"C3'1" "O3'1" 2BA sing 35 n n 
"C3'1" "C2'1" 2BA sing 36 n n 
"C2'1" "O2'1" 2BA sing 37 n n 
"C2'1" "C1'1" 2BA sing 38 n n 
"C1'1" N91 2BA sing 39 n n 
N91 C81 2BA sing 40 n y 
N91 C41 2BA sing 41 n y 
C81 N71 2BA doub 42 n y 
N71 C51 2BA sing 43 n y 
C51 C61 2BA doub 44 n y 
C51 C41 2BA sing 45 n y 
C61 N61 2BA sing 46 n n 
C61 N11 2BA sing 47 n y 
N11 C21 2BA doub 48 n y 
C21 N31 2BA sing 49 n y 
N31 C41 2BA doub 50 n y 
C5' H5' 2BA sing 51 n n 
C5' "H5'A" 2BA sing 52 n n 
C4' H4' 2BA sing 53 n n 
C3' H3' 2BA sing 54 n n 
C2' H2' 2BA sing 55 n n 
O2' HO2' 2BA sing 56 n n 
C1' H1' 2BA sing 57 n n 
C8 H8 2BA sing 58 n n 
N6 HN6 2BA sing 59 n n 
N6 HN6A 2BA sing 60 n n 
C2 H2 2BA sing 61 n n 
"C5'1" HC5' 2BA sing 62 n n 
"C5'1" HC5A 2BA sing 63 n n 
"C4'1" HC4' 2BA sing 64 n n 
"C3'1" HC3' 2BA sing 65 n n 
"C2'1" HC2' 2BA sing 66 n n 
"O2'1" HO2A 2BA sing 67 n n 
"C1'1" HC1' 2BA sing 68 n n 
C81 HC8 2BA sing 69 n n 
N61 H1N6 2BA sing 70 n n 
N61 H1NA 2BA sing 71 n n 
C21 HC2 2BA sing 72 n n 
O2P H2P 2BA sing 73 n n 
O2P1 H2OP 2BA sing 74 n n 
#
_atom_sites.entry_id                     7AHM 
_atom_sites.fract_transf_matrix[1][1]    0.005245 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005245 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011824 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 2BA A 1 201 1 2BA 2BA . 
F 2 2BA C 1 201 2 2BA 2BA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 2BA . . . F 2 45.228 59.372 16.297 1 150.43 ? P 2BA 201 C 1 
HETATM 2 O O1P 2BA . . . F 2 45.579 60.423 15.271 1 145.3 ? O1P 2BA 201 C 1 
HETATM 3 O O2P 2BA . . . F 2 44.69 59.788 17.645 1 175.29 ? O2P 2BA 201 C 1 
HETATM 4 O O5' 2BA . . . F 2 44.188 58.339 15.632 1 133.12 ? O5' 2BA 201 C 1 
HETATM 5 C C5' 2BA . . . F 2 43.041 57.904 16.359 1 165.57 ? C5' 2BA 201 C 1 
HETATM 6 C C4' 2BA . . . F 2 42.15 57.057 15.459 1 196.99 ? C4' 2BA 201 C 1 
HETATM 7 O O4' 2BA . . . F 2 41.246 57.921 14.769 1 204.27 ? O4' 2BA 201 C 1 
HETATM 8 C C3' 2BA . . . F 2 42.967 56.329 14.404 1 205.32 ? C3' 2BA 201 C 1 
HETATM 9 O O3' 2BA . . . F 2 43.032 54.928 14.647 1 217.65 ? O3' 2BA 201 C 1 
HETATM 10 C C2' 2BA . . . F 2 42.278 56.597 13.085 1 197.46 ? C2' 2BA 201 C 1 
HETATM 11 O O2' 2BA . . . F 2 41.598 55.423 12.63 1 196.69 ? O2' 2BA 201 C 1 
HETATM 12 C C1' 2BA . . . F 2 41.29 57.715 13.357 1 193.77 ? C1' 2BA 201 C 1 
HETATM 13 N N9 2BA . . . F 2 41.874 58.924 12.738 1 190.69 ? N9 2BA 201 C 1 
HETATM 14 C C8 2BA . . . F 2 42.336 60.005 13.394 1 188.68 ? C8 2BA 201 C 1 
HETATM 15 N N7 2BA . . . F 2 42.816 60.932 12.527 1 187.21 ? N7 2BA 201 C 1 
HETATM 16 C C5 2BA . . . F 2 42.666 60.437 11.285 1 185.42 ? C5 2BA 201 C 1 
HETATM 17 C C6 2BA . . . F 2 42.962 60.896 9.909 1 175.21 ? C6 2BA 201 C 1 
HETATM 18 N N6 2BA . . . F 2 43.532 62.103 9.681 1 162.99 ? N6 2BA 201 C 1 
HETATM 19 N N1 2BA . . . F 2 42.645 60.069 8.888 1 177.64 ? N1 2BA 201 C 1 
HETATM 20 C C2 2BA . . . F 2 42.079 58.866 9.1 1 168.1 ? C2 2BA 201 C 1 
HETATM 21 N N3 2BA . . . F 2 41.781 58.385 10.318 1 161.74 ? N3 2BA 201 C 1 
HETATM 22 C C4 2BA . . . F 2 42.045 59.112 11.43 1 182.54 ? C4 2BA 201 C 1 
HETATM 23 P P1 2BA . . . F 2 44.415 54.198 14.273 1 209.28 ? P1 2BA 201 C 1 
HETATM 24 O O1P1 2BA . . . F 2 44.719 54.492 12.823 1 211.63 ? O1P1 2BA 201 C 1 
HETATM 25 O O2P1 2BA . . . F 2 44.403 52.763 14.745 1 205.18 ? O2P1 2BA 201 C 1 
HETATM 26 O "O5'1" 2BA . . . F 2 45.445 55.056 15.162 1 134.42 ? "O5'1" 2BA 201 C 1 
HETATM 27 C "C5'1" 2BA . . . F 2 46.622 55.575 14.557 1 99.36 ? "C5'1" 2BA 201 C 1 
HETATM 28 C "C4'1" 2BA . . . F 2 47.424 56.384 15.565 1 87.85 ? "C4'1" 2BA 201 C 1 
HETATM 29 O "O4'1" 2BA . . . F 2 48.811 56.129 15.337 1 140.16 ? "O4'1" 2BA 201 C 1 
HETATM 30 C "C3'1" 2BA . . . F 2 47.196 57.878 15.398 1 120.79 ? "C3'1" 2BA 201 C 1 
HETATM 31 O "O3'1" 2BA . . . F 2 46.52 58.436 16.519 1 157.86 ? "O3'1" 2BA 201 C 1 
HETATM 32 C "C2'1" 2BA . . . F 2 48.577 58.484 15.267 1 146.13 ? "C2'1" 2BA 201 C 1 
HETATM 33 O "O2'1" 2BA . . . F 2 48.967 59.102 16.496 1 119.19 ? "O2'1" 2BA 201 C 1 
HETATM 34 C "C1'1" 2BA . . . F 2 49.498 57.32 14.955 1 164.35 ? "C1'1" 2BA 201 C 1 
HETATM 35 N N91 2BA . . . F 2 49.655 57.287 13.483 1 186.5 ? N91 2BA 201 C 1 
HETATM 36 C C81 2BA . . . F 2 49.324 56.254 12.684 1 185.83 ? C81 2BA 201 C 1 
HETATM 37 N N71 2BA . . . F 2 49.58 56.535 11.383 1 194.29 ? N71 2BA 201 C 1 
HETATM 38 C C51 2BA . . . F 2 50.086 57.779 11.338 1 197.1 ? C51 2BA 201 C 1 
HETATM 39 C C61 2BA . . . F 2 50.572 58.69 10.278 1 199.69 ? C61 2BA 201 C 1 
HETATM 40 N N61 2BA . . . F 2 50.558 58.308 8.979 1 203.2 ? N61 2BA 201 C 1 
HETATM 41 N N11 2BA . . . F 2 51.024 59.908 10.652 1 194.63 ? N11 2BA 201 C 1 
HETATM 42 C C21 2BA . . . F 2 51.037 60.292 11.942 1 185.32 ? C21 2BA 201 C 1 
HETATM 43 N N31 2BA . . . F 2 50.613 59.517 12.955 1 184.27 ? N31 2BA 201 C 1 
HETATM 44 C C41 2BA . . . F 2 50.136 58.271 12.722 1 191.7 ? C41 2BA 201 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           44 
#