data_7AHV # _model_server_result.job_id ekymlw8ULAiEKZNH31vC-A _model_server_result.datetime_utc '2024-11-19 18:19:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ahv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":501}' # _entry.id 7AHV # _exptl.entry_id 7AHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.862 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AHV _cell.length_a 97.03 _cell.length_b 97.03 _cell.length_c 254.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall 'P 4w 2c' _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 136 A CYS 136 1_555 B SG CYS 214 B CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 149 A CYS 149 1_555 A SG CYS 205 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf5 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf6 C SG CYS 5 L CYS 88 1_555 C SG CYS 16 L CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf7 C SG CYS 12 L CYS 95 1_555 C SG CYS 26 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 C SG CYS 28 L CYS 111 1_555 C SG CYS 41 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf9 C SG CYS 49 L CYS 132 1_555 D SG CYS 109 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf10 D SG CYS 26 H CYS 42 1_555 D SG CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf11 D SG CYS 156 H CYS 168 1_555 D SG CYS 170 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf12 D SG CYS 181 H CYS 191 1_555 D SG CYS 209 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 D NE2 HIS 41 H HIS 57 1_555 O C3 0GJ . H 0GJ 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 D OG SER 185 H SER 195 1_555 O C2 0GJ . H 0GJ 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? metalc ? metalc1 D OE1 GLU 55 H GLU 70 1_555 W CA CA . H CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc2 D O ASN 57 H ASN 72 1_555 W CA CA . H CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc3 D O GLU 60 H GLU 75 1_555 W CA CA . H CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc4 D OE1 GLU 62 H GLU 77 1_555 W CA CA . H CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'C14 H28 Cl N6 O5 1' _chem_comp.formula_weight 395.862 _chem_comp.id 0GJ _chem_comp.mon_nstd_flag . _chem_comp.name L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0GJ sing 1 n n N H 0GJ sing 2 n n N H2 0GJ sing 3 n n CA C 0GJ sing 4 n n CA CB 0GJ sing 5 n n CA HA 0GJ sing 6 n n C O 0GJ doub 7 n n C N1 0GJ sing 8 n n CB CG 0GJ sing 9 n n CB HB2 0GJ sing 10 n n CB HB3 0GJ sing 11 n n CG CD 0GJ sing 12 n n CG HG2 0GJ sing 13 n n CG HG3 0GJ sing 14 n n CD OE1 0GJ doub 15 n n CD OE2 0GJ sing 16 n n OE2 HE2 0GJ sing 17 n n N1 CA1 0GJ sing 18 n n N1 H1 0GJ sing 19 n n CA1 C1 0GJ sing 20 n n CA1 HA2 0GJ sing 21 n n CA1 HA3 0GJ sing 22 n n C1 O1 0GJ doub 23 n n C1 N2 0GJ sing 24 n n N2 CA2 0GJ sing 25 n n N2 H3 0GJ sing 26 n n CA2 C2 0GJ sing 27 n n CA2 CB1 0GJ sing 28 n n CA2 HA1 0GJ sing 29 n n C2 O2 0GJ sing 30 n n C2 C3 0GJ sing 31 n n CB1 CG1 0GJ sing 32 n n CB1 HB21 0GJ sing 33 n n CB1 HB31 0GJ sing 34 n n CG1 CD1 0GJ sing 35 n n CG1 HG21 0GJ sing 36 n n CG1 HG31 0GJ sing 37 n n CD1 NE 0GJ sing 38 n n CD1 HD2 0GJ sing 39 n n CD1 HD3 0GJ sing 40 n n NE CZ 0GJ sing 41 n n NE HE 0GJ sing 42 n n CZ NH1 0GJ sing 43 n n CZ NH2 0GJ doub 44 n n NH1 HH11 0GJ sing 45 n n NH1 HH12 0GJ sing 46 n n NH2 HH21 0GJ sing 47 n n NH2 HH22 0GJ sing 48 n n C3 H11 0GJ sing 49 n n C3 H21 0GJ sing 50 n n CL C3 0GJ sing 51 n n C2 H27 0GJ sing 52 n n O2 H28 0GJ sing 53 n n # _atom_sites.entry_id 7AHV _atom_sites.fract_transf_matrix[1][1] 0.010306 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SO4 A 1 301 201 SO4 SO4 . F 5 SO4 A 1 302 212 SO4 SO4 . G 5 SO4 A 1 303 213 SO4 SO4 . H 5 SO4 A 1 304 214 SO4 SO4 . I 5 SO4 A 1 305 215 SO4 SO4 . J 5 SO4 B 1 301 202 SO4 SO4 . K 5 SO4 B 1 302 207 SO4 SO4 . L 5 SO4 B 1 303 208 SO4 SO4 . M 5 SO4 B 1 304 211 SO4 SO4 . N 5 SO4 L 1 201 216 SO4 SO4 . O 6 0GJ H 1 501 501 0GJ 0GJ . P 5 SO4 H 1 502 206 SO4 SO4 . Q 5 SO4 H 1 503 209 SO4 SO4 . R 5 SO4 H 1 504 210 SO4 SO4 . S 5 SO4 H 1 505 217 SO4 SO4 . T 5 SO4 H 1 506 218 SO4 SO4 . U 5 SO4 H 1 507 219 SO4 SO4 . V 5 SO4 H 1 508 220 SO4 SO4 . W 7 CA H 1 509 1 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0GJ . . . O 6 14.306 -40.156 36.815 1 59.96 ? N 0GJ 501 H 1 HETATM 2 C CA 0GJ . . . O 6 14.635 -39.985 38.211 1 56.53 ? CA 0GJ 501 H 1 HETATM 3 C C 0GJ . . . O 6 15.587 -41.127 38.678 1 50.68 ? C 0GJ 501 H 1 HETATM 4 O O 0GJ . . . O 6 15.682 -42.143 38.054 1 49.57 ? O 0GJ 501 H 1 HETATM 5 C CB 0GJ . . . O 6 13.302 -39.893 38.993 1 52.08 ? CB 0GJ 501 H 1 HETATM 6 C CG 0GJ . . . O 6 13.267 -40.579 40.361 1 51.03 ? CG 0GJ 501 H 1 HETATM 7 C CD 0GJ . . . O 6 11.883 -41.212 40.555 1 62.33 ? CD 0GJ 501 H 1 HETATM 8 O OE1 0GJ . . . O 6 11.388 -41.321 41.719 1 63.86 ? OE1 0GJ 501 H 1 HETATM 9 O OE2 0GJ . . . O 6 11.238 -41.628 39.53 1 59.55 -1 OE2 0GJ 501 H 1 HETATM 10 N N1 0GJ . . . O 6 16.447 -40.98 39.904 1 50.94 ? N1 0GJ 501 H 1 HETATM 11 C CA1 0GJ . . . O 6 17.386 -42.044 40.367 1 44.05 ? CA1 0GJ 501 H 1 HETATM 12 C C1 0GJ . . . O 6 16.64 -43.134 41.17 1 41.5 ? C1 0GJ 501 H 1 HETATM 13 O O1 0GJ . . . O 6 15.503 -42.994 41.435 1 43.24 ? O1 0GJ 501 H 1 HETATM 14 N N2 0GJ . . . O 6 17.331 -44.373 41.586 1 38.81 ? N2 0GJ 501 H 1 HETATM 15 C CA2 0GJ . . . O 6 16.606 -45.408 42.317 1 40.59 ? CA2 0GJ 501 H 1 HETATM 16 C C2 0GJ . . . O 6 17.449 -45.909 43.503 1 40.93 ? C2 0GJ 501 H 1 HETATM 17 O O2 0GJ . . . O 6 16.561 -46.612 44.354 1 39.34 ? O2 0GJ 501 H 1 HETATM 18 C CB1 0GJ . . . O 6 16.292 -46.543 41.285 1 37.08 ? CB1 0GJ 501 H 1 HETATM 19 C CG1 0GJ . . . O 6 16.042 -45.995 39.837 1 39.01 ? CG1 0GJ 501 H 1 HETATM 20 C CD1 0GJ . . . O 6 16.265 -47.054 38.744 1 36.22 ? CD1 0GJ 501 H 1 HETATM 21 N NE 0GJ . . . O 6 15.299 -46.843 37.617 1 40.17 ? NE 0GJ 501 H 1 HETATM 22 C CZ 0GJ . . . O 6 15.325 -47.739 36.435 1 45.3 ? CZ 0GJ 501 H 1 HETATM 23 N NH1 0GJ . . . O 6 14.41 -47.566 35.351 1 42.03 ? NH1 0GJ 501 H 1 HETATM 24 N NH2 0GJ . . . O 6 16.153 -48.662 36.356 1 40.01 ? NH2 0GJ 501 H 1 HETATM 25 C C3 0GJ . . . O 6 18.048 -44.666 44.187 1 36.94 ? C3 0GJ 501 H 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 448 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 25 #