data_7AIP # _model_server_result.job_id 9jhUfkeTyHMda8J5QHjGYg _model_server_result.datetime_utc '2024-12-18 14:03:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1201}' # _entry.id 7AIP # _exptl.entry_id 7AIP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AIP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1104 NAG 2 n C NAG 2 C 2 NAG A 1105 NAG 2 n C BMA 3 C 3 BMA A 1106 BMA 3 n D NAG 1 F 1 NAG A 1107 NAG 3 n D NAG 2 F 2 NAG A 1108 NAG 2 n E NAG 1 J 1 NAG B 1104 NAG 2 n E NAG 2 J 2 NAG B 1105 NAG 2 n E BMA 3 J 3 BMA B 1106 BMA 3 n F NAG 1 M 1 NAG B 1107 NAG 3 n F NAG 2 M 2 NAG B 1108 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 145 A CYS 163 1_555 A SG CYS 608 A CYS 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 290 A CYS 308 1_555 A SG CYS 305 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 325 A CYS 343 1_555 A SG CYS 335 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 145 B CYS 163 1_555 B SG CYS 608 B CYS 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 B SG CYS 290 B CYS 308 1_555 B SG CYS 305 B CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 325 B CYS 343 1_555 B SG CYS 335 B CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 294 A ASN 312 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 343 A ASN 361 1_555 D C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A C GLY 715 A GLY 733 1_555 A N SEP 716 A SEP 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C SEP 716 A SEP 734 1_555 A N PHE 717 A PHE 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C ASN 897 A ASN 915 1_555 A N SEP 898 A SEP 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C SEP 898 A SEP 916 1_555 A N ASP 899 A ASP 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B ND2 ASN 294 B ASN 312 1_555 E C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale8 B ND2 ASN 343 B ASN 361 1_555 F C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 B C GLY 715 B GLY 733 1_555 B N SEP 716 B SEP 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 B C SEP 716 B SEP 734 1_555 B N PHE 717 B PHE 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C ASN 897 B ASN 915 1_555 B N SEP 898 B SEP 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C SEP 898 B SEP 916 1_555 B N ASP 899 B ASP 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale14 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale15 D O4 NAG . F NAG 1 1_555 D C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale16 E O4 NAG . J NAG 1 1_555 E C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale17 E O4 NAG . J NAG 2 1_555 E C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale18 F O4 NAG . M NAG 1 1_555 F C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? metalc ? metalc1 A O ARG 788 A ARG 806 1_555 H MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 G O3G ATP . A ATP 1201 1_555 H MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc3 B O ARG 788 B ARG 806 1_555 J MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 I O3G ATP . B ATP 1201 1_555 J MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7AIP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 1201 1201 ATP ATP . H 5 MG A 1 1202 1301 MG MG . I 4 ATP B 1 1201 1201 ATP ATP . J 5 MG B 1 1202 1301 MG MG . K 6 HOH A 1 1301 1402 HOH HOH . K 6 HOH A 2 1302 1401 HOH HOH . L 6 HOH B 1 1301 1402 HOH HOH . L 6 HOH B 2 1302 1401 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 4 145.507 118.082 192.486 1 20 ? PG ATP 1201 A 1 HETATM 2 O O1G ATP . . . G 4 146.54 118.049 193.585 1 20 ? O1G ATP 1201 A 1 HETATM 3 O O2G ATP . . . G 4 145.078 116.703 192.056 1 20 ? O2G ATP 1201 A 1 HETATM 4 O O3G ATP . . . G 4 144.37 119.045 192.725 1 20 ? O3G ATP 1201 A 1 HETATM 5 P PB ATP . . . G 4 145.793 118.74 189.714 1 20 ? PB ATP 1201 A 1 HETATM 6 O O1B ATP . . . G 4 145.448 120.163 189.353 1 20 ? O1B ATP 1201 A 1 HETATM 7 O O2B ATP . . . G 4 146.807 118.01 188.869 1 20 ? O2B ATP 1201 A 1 HETATM 8 O O3B ATP . . . G 4 146.321 118.704 191.238 1 20 ? O3B ATP 1201 A 1 HETATM 9 P PA ATP . . . G 4 142.976 118.437 189.6 1 20 ? PA ATP 1201 A 1 HETATM 10 O O1A ATP . . . G 4 142.019 117.47 190.242 1 20 ? O1A ATP 1201 A 1 HETATM 11 O O2A ATP . . . G 4 142.955 119.872 190.051 1 20 ? O2A ATP 1201 A 1 HETATM 12 O O3A ATP . . . G 4 144.46 117.84 189.756 1 20 ? O3A ATP 1201 A 1 HETATM 13 O O5' ATP . . . G 4 142.732 118.379 188.014 1 20 ? O5' ATP 1201 A 1 HETATM 14 C C5' ATP . . . G 4 141.927 117.335 187.477 1 20 ? C5' ATP 1201 A 1 HETATM 15 C C4' ATP . . . G 4 141.387 117.752 186.118 1 20 ? C4' ATP 1201 A 1 HETATM 16 O O4' ATP . . . G 4 140.121 118.381 186.317 1 20 ? O4' ATP 1201 A 1 HETATM 17 C C3' ATP . . . G 4 142.204 118.802 185.407 1 20 ? C3' ATP 1201 A 1 HETATM 18 O O3' ATP . . . G 4 143.224 118.191 184.627 1 20 ? O3' ATP 1201 A 1 HETATM 19 C C2' ATP . . . G 4 141.171 119.4 184.494 1 20 ? C2' ATP 1201 A 1 HETATM 20 O O2' ATP . . . G 4 140.911 118.518 183.406 1 20 ? O2' ATP 1201 A 1 HETATM 21 C C1' ATP . . . G 4 139.969 119.478 185.412 1 20 ? C1' ATP 1201 A 1 HETATM 22 N N9 ATP . . . G 4 140.019 120.762 186.148 1 20 ? N9 ATP 1201 A 1 HETATM 23 C C8 ATP . . . G 4 140.361 120.912 187.437 1 20 ? C8 ATP 1201 A 1 HETATM 24 N N7 ATP . . . G 4 140.325 122.214 187.809 1 20 ? N7 ATP 1201 A 1 HETATM 25 C C5 ATP . . . G 4 139.956 122.924 186.73 1 20 ? C5 ATP 1201 A 1 HETATM 26 C C6 ATP . . . G 4 139.725 124.353 186.427 1 20 ? C6 ATP 1201 A 1 HETATM 27 N N6 ATP . . . G 4 139.881 125.309 187.37 1 20 ? N6 ATP 1201 A 1 HETATM 28 N N1 ATP . . . G 4 139.35 124.671 185.176 1 20 ? N1 ATP 1201 A 1 HETATM 29 C C2 ATP . . . G 4 139.183 123.737 184.232 1 20 ? C2 ATP 1201 A 1 HETATM 30 N N3 ATP . . . G 4 139.383 122.427 184.431 1 20 ? N3 ATP 1201 A 1 HETATM 31 C C4 ATP . . . G 4 139.766 121.965 185.64 1 20 ? C4 ATP 1201 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #