data_7AJ7
#
_model_server_result.job_id            AI2W5FEjbO7DTsty98Mcag 
_model_server_result.datetime_utc      '2025-01-12 00:44:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7aj7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    7AJ7 
#
_exptl.entry_id    7AJ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              239.276 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(3-methylbenzimidazol-5-yl)pyridine-2,6-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AJ7 
_cell.length_a            81.814 
_cell.length_b            81.814 
_cell.length_c            124.405 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AJ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 194 A GLN 320 1_555 A N PTR 195 A PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 A C PTR 195 A PTR 321 1_555 A N ILE 196 A ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C13 H13 N5' 
_chem_comp.formula_weight    239.276 
_chem_comp.id                RHT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(3-methylbenzimidazol-5-yl)pyridine-2,6-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C11 RHT sing 306 n n 
N4 C11 RHT doub 307 n y 
N4 C12 RHT sing 308 n y 
N5 C12 RHT sing 309 n n 
C11 C10 RHT sing 310 n y 
C12 C13 RHT doub 311 n y 
C10 C9 RHT doub 312 n y 
C13 C9 RHT sing 313 n y 
C9 C6 RHT sing 314 n n 
C6 C7 RHT doub 315 n y 
C6 C5 RHT sing 316 n y 
C7 C8 RHT sing 317 n y 
C5 C4 RHT doub 318 n y 
C8 C3 RHT doub 319 n y 
C8 N1 RHT sing 320 n y 
C4 C3 RHT sing 321 n y 
C1 N1 RHT sing 322 n n 
C3 N2 RHT sing 323 n y 
N1 C2 RHT sing 324 n y 
N2 C2 RHT doub 325 n y 
C1 H1 RHT sing 326 n n 
C1 H2 RHT sing 327 n n 
C1 H3 RHT sing 328 n n 
C2 H4 RHT sing 329 n n 
N3 H5 RHT sing 330 n n 
N3 H6 RHT sing 331 n n 
C4 H7 RHT sing 332 n n 
C5 H8 RHT sing 333 n n 
N5 H9 RHT sing 334 n n 
N5 H10 RHT sing 335 n n 
C7 H11 RHT sing 336 n n 
C10 H12 RHT sing 337 n n 
C13 H13 RHT sing 338 n n 
#
_atom_sites.entry_id                     7AJ7 
_atom_sites.fract_transf_matrix[1][1]    0.012223 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012223 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RHT A 1 501 1482 RHT UNL . 
C 3 CL A 1 502 1483 CL CL . 
D 3 CL A 1 503 1484 CL CL . 
E 4 HOH A 1 601 2019 HOH HOH . 
E 4 HOH A 2 602 2082 HOH HOH . 
E 4 HOH A 3 603 2064 HOH HOH . 
E 4 HOH A 4 604 2023 HOH HOH . 
E 4 HOH A 5 605 2021 HOH HOH . 
E 4 HOH A 6 606 2020 HOH HOH . 
E 4 HOH A 7 607 2072 HOH HOH . 
E 4 HOH A 8 608 2028 HOH HOH . 
E 4 HOH A 9 609 2032 HOH HOH . 
E 4 HOH A 10 610 2006 HOH HOH . 
E 4 HOH A 11 611 2029 HOH HOH . 
E 4 HOH A 12 612 2012 HOH HOH . 
E 4 HOH A 13 613 2030 HOH HOH . 
E 4 HOH A 14 614 2025 HOH HOH . 
E 4 HOH A 15 615 2062 HOH HOH . 
E 4 HOH A 16 616 2009 HOH HOH . 
E 4 HOH A 17 617 2046 HOH HOH . 
E 4 HOH A 18 618 2058 HOH HOH . 
E 4 HOH A 19 619 2081 HOH HOH . 
E 4 HOH A 20 620 2001 HOH HOH . 
E 4 HOH A 21 621 2014 HOH HOH . 
E 4 HOH A 22 622 2027 HOH HOH . 
E 4 HOH A 23 623 2045 HOH HOH . 
E 4 HOH A 24 624 2078 HOH HOH . 
E 4 HOH A 25 625 2044 HOH HOH . 
E 4 HOH A 26 626 2079 HOH HOH . 
E 4 HOH A 27 627 2066 HOH HOH . 
E 4 HOH A 28 628 2010 HOH HOH . 
E 4 HOH A 29 629 2070 HOH HOH . 
E 4 HOH A 30 630 2067 HOH HOH . 
E 4 HOH A 31 631 2054 HOH HOH . 
E 4 HOH A 32 632 2041 HOH HOH . 
E 4 HOH A 33 633 2080 HOH HOH . 
E 4 HOH A 34 634 2017 HOH HOH . 
E 4 HOH A 35 635 2065 HOH HOH . 
E 4 HOH A 36 636 2033 HOH HOH . 
E 4 HOH A 37 637 2068 HOH HOH . 
E 4 HOH A 38 638 2047 HOH HOH . 
E 4 HOH A 39 639 2008 HOH HOH . 
E 4 HOH A 40 640 2048 HOH HOH . 
E 4 HOH A 41 641 2040 HOH HOH . 
E 4 HOH A 42 642 2002 HOH HOH . 
E 4 HOH A 43 643 2061 HOH HOH . 
E 4 HOH A 44 644 2053 HOH HOH . 
E 4 HOH A 45 645 2063 HOH HOH . 
E 4 HOH A 46 646 2077 HOH HOH . 
E 4 HOH A 47 647 2060 HOH HOH . 
E 4 HOH A 48 648 2076 HOH HOH . 
E 4 HOH A 49 649 2057 HOH HOH . 
E 4 HOH A 50 650 2052 HOH HOH . 
E 4 HOH A 51 651 2007 HOH HOH . 
E 4 HOH A 52 652 2049 HOH HOH . 
E 4 HOH A 53 653 2039 HOH HOH . 
E 4 HOH A 54 654 2005 HOH HOH . 
E 4 HOH A 55 655 2003 HOH HOH . 
E 4 HOH A 56 656 2071 HOH HOH . 
E 4 HOH A 57 657 2037 HOH HOH . 
E 4 HOH A 58 658 2074 HOH HOH . 
E 4 HOH A 59 659 2022 HOH HOH . 
E 4 HOH A 60 660 2038 HOH HOH . 
E 4 HOH A 61 661 2015 HOH HOH . 
E 4 HOH A 62 662 2036 HOH HOH . 
E 4 HOH A 63 663 2051 HOH HOH . 
E 4 HOH A 64 664 2035 HOH HOH . 
E 4 HOH A 65 665 2069 HOH HOH . 
E 4 HOH A 66 666 2026 HOH HOH . 
E 4 HOH A 67 667 2059 HOH HOH . 
E 4 HOH A 68 668 2031 HOH HOH . 
E 4 HOH A 69 669 2011 HOH HOH . 
E 4 HOH A 70 670 2004 HOH HOH . 
E 4 HOH A 71 671 2034 HOH HOH . 
E 4 HOH A 72 672 2056 HOH HOH . 
E 4 HOH A 73 673 2050 HOH HOH . 
E 4 HOH A 74 674 2073 HOH HOH . 
E 4 HOH A 75 675 2075 HOH HOH . 
E 4 HOH A 76 676 2024 HOH HOH . 
E 4 HOH A 77 677 2013 HOH HOH . 
E 4 HOH A 78 678 2018 HOH HOH . 
E 4 HOH A 79 679 2016 HOH HOH . 
E 4 HOH A 80 680 2042 HOH HOH . 
E 4 HOH A 81 681 2083 HOH HOH . 
E 4 HOH A 82 682 2055 HOH HOH . 
E 4 HOH A 83 683 2043 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RHT . . . B 2 44.105 2.385 16.082 1 61.31 ? C1 RHT 501 A 1 
HETATM 2 N N1 RHT . . . B 2 44.153 3.806 16.375 1 53.98 ? N1 RHT 501 A 1 
HETATM 3 C C2 RHT . . . B 2 44.537 4.414 17.522 1 51.27 ? C2 RHT 501 A 1 
HETATM 4 N N2 RHT . . . B 2 44.444 5.723 17.497 1 51.15 ? N2 RHT 501 A 1 
HETATM 5 C C3 RHT . . . B 2 43.968 6 16.221 1 52 ? C3 RHT 501 A 1 
HETATM 6 N N3 RHT . . . B 2 41.711 3.767 9.35 1 52.94 ? N3 RHT 501 A 1 
HETATM 7 C C4 RHT . . . B 2 43.667 7.209 15.602 1 53.93 ? C4 RHT 501 A 1 
HETATM 8 N N4 RHT . . . B 2 41.208 5.988 9.65 1 56.49 ? N4 RHT 501 A 1 
HETATM 9 C C5 RHT . . . B 2 43.193 7.182 14.305 1 57.52 ? C5 RHT 501 A 1 
HETATM 10 N N5 RHT . . . B 2 40.656 8.212 9.902 1 63.13 ? N5 RHT 501 A 1 
HETATM 11 C C6 RHT . . . B 2 43.011 5.981 13.571 1 56.36 ? C6 RHT 501 A 1 
HETATM 12 C C7 RHT . . . B 2 43.302 4.783 14.221 1 54.74 ? C7 RHT 501 A 1 
HETATM 13 C C8 RHT . . . B 2 43.783 4.81 15.519 1 53.68 ? C8 RHT 501 A 1 
HETATM 14 C C9 RHT . . . B 2 42.429 5.988 12.192 1 59.82 ? C9 RHT 501 A 1 
HETATM 15 C C10 RHT . . . B 2 42.367 4.83 11.406 1 62.6 ? C10 RHT 501 A 1 
HETATM 16 C C11 RHT . . . B 2 41.767 4.862 10.13 1 55.23 ? C11 RHT 501 A 1 
HETATM 17 C C12 RHT . . . B 2 41.228 7.105 10.409 1 58.78 ? C12 RHT 501 A 1 
HETATM 18 C C13 RHT . . . B 2 41.809 7.129 11.69 1 57.71 ? C13 RHT 501 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           18 
#