data_7AJ9
#
_model_server_result.job_id            iatL2w5rLqqAAt9IR1TFeA 
_model_server_result.datetime_utc      '2024-11-23 14:17:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7aj9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    7AJ9 
#
_exptl.entry_id    7AJ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AJ9 
_cell.length_a            54.92 
_cell.length_b            93.046 
_cell.length_c            249.983 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AJ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
'PISA and gel filtration' monomer 1 author_and_software_defined_assembly 1 
'PISA and gel filtration' monomer 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 134 A HIS 150 1_555 A N MSE 135 A MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C MSE 135 A MSE 151 1_555 A N ALA 136 A ALA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C LEU 145 A LEU 161 1_555 A N MSE 146 A MSE 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale4 A C MSE 146 A MSE 162 1_555 A N ASP 147 A ASP 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 A C GLN 179 A GLN 195 1_555 A N MSE 180 A MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 A C MSE 180 A MSE 196 1_555 A N GLU 181 A GLU 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale7 A C LYS 230 A LYS 246 1_555 A N MSE 231 A MSE 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale8 A C MSE 231 A MSE 247 1_555 A N HIS 232 A HIS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale9 A C THR 244 A THR 260 1_555 A N MSE 245 A MSE 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale10 A C MSE 245 A MSE 261 1_555 A N LYS 246 A LYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale11 A C SER 275 A SER 291 1_555 A N MSE 276 A MSE 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale12 A C MSE 276 A MSE 292 1_555 A N ILE 277 A ILE 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale13 A C ASP 285 A ASP 301 1_555 A N MSE 286 A MSE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale14 A C MSE 286 A MSE 302 1_555 A N LYS 287 A LYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale15 A C VAL 311 A VAL 327 1_555 A N MSE 312 A MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale16 A C MSE 312 A MSE 328 1_555 A N ASN 313 A ASN 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale17 A C ILE 331 A ILE 347 1_555 A N MSE 332 A MSE 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale18 A C MSE 332 A MSE 348 1_555 A N VAL 333 A VAL 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale19 A C PRO 338 A PRO 354 1_555 A N MSE 339 A MSE 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale20 A C MSE 339 A MSE 355 1_555 A N VAL 340 A VAL 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale21 A C HIS 351 A HIS 367 1_555 A N MSE 352 A MSE 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale22 A C MSE 352 A MSE 368 1_555 A N GLU 353 A GLU 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale23 B C HIS 134 B HIS 150 1_555 B N MSE 135 B MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale24 B C MSE 135 B MSE 151 1_555 B N ALA 136 B ALA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale25 B C LEU 145 B LEU 161 1_555 B N MSE 146 B MSE 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale26 B C MSE 146 B MSE 162 1_555 B N ASP 147 B ASP 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale27 B C GLN 179 B GLN 195 1_555 B N MSE 180 B MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale28 B C MSE 180 B MSE 196 1_555 B N GLU 181 B GLU 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale29 B C LYS 230 B LYS 246 1_555 B N MSE 231 B MSE 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale30 B C MSE 231 B MSE 247 1_555 B N HIS 232 B HIS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale31 B C THR 244 B THR 260 1_555 B N MSE 245 B MSE 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale32 B C MSE 245 B MSE 261 1_555 B N LYS 246 B LYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale33 B C SER 275 B SER 291 1_555 B N MSE 276 B MSE 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale34 B C MSE 276 B MSE 292 1_555 B N ILE 277 B ILE 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale35 B C ASP 285 B ASP 301 1_555 B N MSE 286 B MSE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale36 B C MSE 286 B MSE 302 1_555 B N LYS 287 B LYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale37 B C VAL 311 B VAL 327 1_555 B N MSE 312 B MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale38 B C MSE 312 B MSE 328 1_555 B N ASN 313 B ASN 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale39 B C ILE 331 B ILE 347 1_555 B N MSE 332 B MSE 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale40 B C MSE 332 B MSE 348 1_555 B N VAL 333 B VAL 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale41 B C PRO 338 B PRO 354 1_555 B N MSE 339 B MSE 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale42 B C MSE 339 B MSE 355 1_555 B N VAL 340 B VAL 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale43 B C HIS 351 B HIS 367 1_555 B N MSE 352 B MSE 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale44 B C MSE 352 B MSE 368 1_555 B N GLU 353 B GLU 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7AJ9 
_atom_sites.fract_transf_matrix[1][1]    0.018208 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010747 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 601 601 EDO EDO . 
D 2 EDO B 1 601 601 EDO EDO . 
E 3 HOH A 1 701 6 HOH HOH . 
E 3 HOH A 2 702 23 HOH HOH . 
E 3 HOH A 3 703 5 HOH HOH . 
E 3 HOH A 4 704 13 HOH HOH . 
E 3 HOH A 5 705 14 HOH HOH . 
E 3 HOH A 6 706 1 HOH HOH . 
E 3 HOH A 7 707 27 HOH HOH . 
E 3 HOH A 8 708 49 HOH HOH . 
E 3 HOH A 9 709 22 HOH HOH . 
E 3 HOH A 10 710 7 HOH HOH . 
E 3 HOH A 11 711 35 HOH HOH . 
E 3 HOH A 12 712 29 HOH HOH . 
E 3 HOH A 13 713 58 HOH HOH . 
E 3 HOH A 14 714 39 HOH HOH . 
E 3 HOH A 15 715 16 HOH HOH . 
E 3 HOH A 16 716 47 HOH HOH . 
E 3 HOH A 17 717 41 HOH HOH . 
E 3 HOH A 18 718 38 HOH HOH . 
E 3 HOH A 19 719 9 HOH HOH . 
E 3 HOH A 20 720 4 HOH HOH . 
E 3 HOH A 21 721 3 HOH HOH . 
E 3 HOH A 22 722 2 HOH HOH . 
E 3 HOH A 23 723 64 HOH HOH . 
E 3 HOH A 24 724 42 HOH HOH . 
E 3 HOH A 25 725 50 HOH HOH . 
E 3 HOH A 26 726 65 HOH HOH . 
E 3 HOH A 27 727 61 HOH HOH . 
E 3 HOH A 28 728 44 HOH HOH . 
E 3 HOH A 29 729 45 HOH HOH . 
E 3 HOH A 30 730 57 HOH HOH . 
E 3 HOH A 31 731 59 HOH HOH . 
E 3 HOH A 32 732 51 HOH HOH . 
E 3 HOH A 33 733 63 HOH HOH . 
E 3 HOH A 34 734 43 HOH HOH . 
E 3 HOH A 35 735 55 HOH HOH . 
E 3 HOH A 36 736 40 HOH HOH . 
E 3 HOH A 37 737 52 HOH HOH . 
E 3 HOH A 38 738 60 HOH HOH . 
E 3 HOH A 39 739 48 HOH HOH . 
E 3 HOH A 40 740 53 HOH HOH . 
E 3 HOH A 41 741 54 HOH HOH . 
E 3 HOH A 42 742 46 HOH HOH . 
E 3 HOH A 43 743 66 HOH HOH . 
E 3 HOH A 44 744 56 HOH HOH . 
F 3 HOH B 1 701 10 HOH HOH . 
F 3 HOH B 2 702 37 HOH HOH . 
F 3 HOH B 3 703 36 HOH HOH . 
F 3 HOH B 4 704 18 HOH HOH . 
F 3 HOH B 5 705 19 HOH HOH . 
F 3 HOH B 6 706 20 HOH HOH . 
F 3 HOH B 7 707 62 HOH HOH . 
F 3 HOH B 8 708 75 HOH HOH . 
F 3 HOH B 9 709 12 HOH HOH . 
F 3 HOH B 10 710 24 HOH HOH . 
F 3 HOH B 11 711 69 HOH HOH . 
F 3 HOH B 12 712 68 HOH HOH . 
F 3 HOH B 13 713 25 HOH HOH . 
F 3 HOH B 14 714 33 HOH HOH . 
F 3 HOH B 15 715 70 HOH HOH . 
F 3 HOH B 16 716 32 HOH HOH . 
F 3 HOH B 17 717 72 HOH HOH . 
F 3 HOH B 18 718 77 HOH HOH . 
F 3 HOH B 19 719 67 HOH HOH . 
F 3 HOH B 20 720 74 HOH HOH . 
F 3 HOH B 21 721 76 HOH HOH . 
F 3 HOH B 22 722 71 HOH HOH . 
F 3 HOH B 23 723 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 2 51.721 2.56 -0.742 1 67.37 ? C1 EDO 601 B 1 
HETATM 2 O O1 EDO . . . D 2 52.78 3.334 -0.24 1 64.68 ? O1 EDO 601 B 1 
HETATM 3 C C2 EDO . . . D 2 52.17 1.331 -1.472 1 64.12 ? C2 EDO 601 B 1 
HETATM 4 O O2 EDO . . . D 2 52.64 0.251 -0.678 1 60.51 ? O2 EDO 601 B 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#