data_7AJK
#
_model_server_result.job_id            VmcK7GzcC0nYvIJQyDNEGQ 
_model_server_result.datetime_utc      '2024-11-02 21:30:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ajk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    7AJK 
#
_exptl.entry_id    7AJK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7AJK 
_cell.length_a            81.87 
_cell.length_b            81.87 
_cell.length_c            355.87 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AJK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 20 BBB THR 17 1_555 C MG MG . BBB MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc2 A OG1 THR 38 BBB THR 35 1_555 C MG MG . BBB MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
metalc ? metalc3 C MG MG . BBB MG 201 1_555 D O1B GNP . BBB GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc4 C MG MG . BBB MG 201 1_555 D O2G GNP . BBB GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc5 C MG MG . BBB MG 201 1_555 E O HOH . BBB HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc6 C MG MG . BBB MG 201 1_555 E O HOH . BBB HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     7AJK 
_atom_sites.fract_transf_matrix[1][1]    0.012214 
_atom_sites.fract_transf_matrix[1][2]    0.007052 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014104 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00281 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG BBB 1 201 201 MG MG . 
D 4 GNP BBB 1 202 301 GNP GNP . 
E 5 HOH BBB 1 301 7 HOH HOH . 
E 5 HOH BBB 2 302 8 HOH HOH . 
E 5 HOH BBB 3 303 9 HOH HOH . 
E 5 HOH BBB 4 304 5 HOH HOH . 
E 5 HOH BBB 5 305 11 HOH HOH . 
E 5 HOH BBB 6 306 6 HOH HOH . 
E 5 HOH BBB 7 307 2 HOH HOH . 
F 5 HOH CCC 1 401 1 HOH HOH . 
F 5 HOH CCC 2 402 3 HOH HOH . 
F 5 HOH CCC 3 403 4 HOH HOH . 
F 5 HOH CCC 4 404 10 HOH HOH . 
F 5 HOH CCC 5 405 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . D 4 -20.284 7.179 -51.913 1 84.37 ? PG GNP 202 BBB 1 
HETATM 2 O O1G GNP . . . D 4 -19.01 6.592 -51.361 1 67.51 ? O1G GNP 202 BBB 1 
HETATM 3 O O2G GNP . . . D 4 -21.118 7.663 -50.753 1 82.02 ? O2G GNP 202 BBB 1 
HETATM 4 O O3G GNP . . . D 4 -19.947 8.362 -52.786 1 107.84 ? O3G GNP 202 BBB 1 
HETATM 5 N N3B GNP . . . D 4 -21.1 6.053 -52.763 1 77.49 ? N3B GNP 202 BBB 1 
HETATM 6 P PB GNP . . . D 4 -22.276 5.113 -52.145 1 72.07 ? PB GNP 202 BBB 1 
HETATM 7 O O1B GNP . . . D 4 -22.947 5.772 -50.972 1 83.11 ? O1B GNP 202 BBB 1 
HETATM 8 O O2B GNP . . . D 4 -21.843 3.679 -52.018 1 70.33 ? O2B GNP 202 BBB 1 
HETATM 9 O O3A GNP . . . D 4 -23.406 5.116 -53.272 1 72.86 ? O3A GNP 202 BBB 1 
HETATM 10 P PA GNP . . . D 4 -24.977 5.392 -53.148 1 72.65 ? PA GNP 202 BBB 1 
HETATM 11 O O1A GNP . . . D 4 -25.192 6.786 -52.657 1 56.9 ? O1A GNP 202 BBB 1 
HETATM 12 O O2A GNP . . . D 4 -25.606 4.268 -52.394 1 77.15 ? O2A GNP 202 BBB 1 
HETATM 13 O O5' GNP . . . D 4 -25.4 5.303 -54.688 1 77.2 ? O5' GNP 202 BBB 1 
HETATM 14 C C5' GNP . . . D 4 -26.097 6.468 -55.166 1 87.99 ? C5' GNP 202 BBB 1 
HETATM 15 C C4' GNP . . . D 4 -26.676 6.206 -56.533 1 80.7 ? C4' GNP 202 BBB 1 
HETATM 16 O O4' GNP . . . D 4 -26.722 4.777 -56.79 1 75.03 ? O4' GNP 202 BBB 1 
HETATM 17 C C3' GNP . . . D 4 -28.118 6.696 -56.717 1 79 ? C3' GNP 202 BBB 1 
HETATM 18 O O3' GNP . . . D 4 -28.346 7.137 -58.048 1 87.84 ? O3' GNP 202 BBB 1 
HETATM 19 C C2' GNP . . . D 4 -28.917 5.43 -56.398 1 79.56 ? C2' GNP 202 BBB 1 
HETATM 20 O O2' GNP . . . D 4 -30.226 5.464 -56.921 1 79.78 ? O2' GNP 202 BBB 1 
HETATM 21 C C1' GNP . . . D 4 -28.043 4.407 -57.11 1 79.25 ? C1' GNP 202 BBB 1 
HETATM 22 N N9 GNP . . . D 4 -28.255 3.025 -56.697 1 92.68 ? N9 GNP 202 BBB 1 
HETATM 23 C C8 GNP . . . D 4 -27.808 2.439 -55.541 1 94.53 ? C8 GNP 202 BBB 1 
HETATM 24 N N7 GNP . . . D 4 -28.134 1.173 -55.443 1 89.37 ? N7 GNP 202 BBB 1 
HETATM 25 C C5 GNP . . . D 4 -28.833 0.908 -56.613 1 94.82 ? C5 GNP 202 BBB 1 
HETATM 26 C C6 GNP . . . D 4 -29.428 -0.297 -57.065 1 101.9 ? C6 GNP 202 BBB 1 
HETATM 27 O O6 GNP . . . D 4 -29.45 -1.4 -56.501 1 98.77 ? O6 GNP 202 BBB 1 
HETATM 28 N N1 GNP . . . D 4 -30.034 -0.13 -58.311 1 98.54 ? N1 GNP 202 BBB 1 
HETATM 29 C C2 GNP . . . D 4 -30.069 1.043 -59.024 1 102.71 ? C2 GNP 202 BBB 1 
HETATM 30 N N2 GNP . . . D 4 -30.703 1.008 -60.203 1 111.82 ? N2 GNP 202 BBB 1 
HETATM 31 N N3 GNP . . . D 4 -29.512 2.179 -58.604 1 108.59 ? N3 GNP 202 BBB 1 
HETATM 32 C C4 GNP . . . D 4 -28.913 2.039 -57.396 1 93.79 ? C4 GNP 202 BBB 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#