data_7AJX # _model_server_result.job_id VQXoXdvnVSuxCPsUnb_Dbg _model_server_result.datetime_utc '2024-10-10 13:33:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ajx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7AJX # _exptl.entry_id 7AJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.478 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '(2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AJX _cell.length_a 57.877 _cell.length_b 101.224 _cell.length_c 115.285 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomer _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 134 A HIS 150 1_555 A N MSE 135 A MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 135 A MSE 151 1_555 A N ALA 136 A ALA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C LEU 145 A LEU 161 1_555 A N MSE 146 A MSE 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C MSE 146 A MSE 162 1_555 A N ASP 147 A ASP 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C GLN 179 A GLN 195 1_555 A N MSE 180 A MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale6 A C MSE 180 A MSE 196 1_555 A N GLU 181 A GLU 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C LYS 230 A LYS 246 1_555 A N MSE 231 A MSE 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 231 A MSE 247 1_555 A N HIS 232 A HIS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale9 A C THR 244 A THR 260 1_555 A N MSE 245 A MSE 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 A C MSE 245 A MSE 261 1_555 A N LYS 246 A LYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale11 A C SER 275 A SER 291 1_555 A N MSE 276 A MSE 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale12 A C MSE 276 A MSE 292 1_555 A N ILE 277 A ILE 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale13 A C ASP 285 A ASP 301 1_555 A N MSE 286 A MSE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 A C MSE 286 A MSE 302 1_555 A N LYS 287 A LYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 A C VAL 311 A VAL 327 1_555 A N MSE 312 A MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 A C MSE 312 A MSE 328 1_555 A N ASN 313 A ASN 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale17 A C ILE 331 A ILE 347 1_555 A N MSE 332 A MSE 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale18 A C MSE 332 A MSE 348 1_555 A N VAL 333 A VAL 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale19 A C PRO 338 A PRO 354 1_555 A N MSE 339 A MSE 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale20 A C MSE 339 A MSE 355 1_555 A N VAL 340 A VAL 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale21 A C HIS 351 A HIS 367 1_555 A N MSE 352 A MSE 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale22 A C MSE 352 A MSE 368 1_555 A N GLU 353 A GLU 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale23 A SG CYS 428 A CYS 444 1_555 B C1 MXR . A MXR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? # _chem_comp.formula 'C17 H27 N3 O5 S' _chem_comp.formula_weight 385.478 _chem_comp.id MXR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'meropenem bound form (tautomerism)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 N23 MXR sing 246 n n O12 C11 MXR doub 247 n n C25 N23 MXR sing 248 n n O13 C11 MXR sing 249 n n N23 C22 MXR sing 250 n n C11 C5 MXR sing 251 n n C22 C17 MXR sing 252 n n C22 O24 MXR doub 253 n n C17 C16 MXR sing 254 n n C17 N19 MXR sing 255 n n C5 N10 MXR doub 256 n n C5 C2 MXR sing 257 n n N10 C4 MXR sing 258 n n C16 C15 MXR sing 259 n n N19 C21 MXR sing 260 n n C2 S14 MXR sing 261 n n C2 C18 MXR sing 262 n n O6 C1 MXR doub 263 n n S14 C15 MXR sing 264 n n C1 C3 MXR sing 265 n n C15 C21 MXR sing 266 n n C4 C18 MXR sing 267 n n C4 C3 MXR sing 268 n n C18 C20 MXR sing 269 n n C3 C7 MXR sing 270 n n C7 C9 MXR sing 271 n n C7 O8 MXR sing 272 n n C1 H1 MXR sing 273 n n C2 H3 MXR sing 274 n n C3 H4 MXR sing 275 n n C4 H5 MXR sing 276 n n C7 H8 MXR sing 277 n n O8 H9 MXR sing 278 n n C9 H10 MXR sing 279 n n C9 H11 MXR sing 280 n n C9 H12 MXR sing 281 n n O13 H15 MXR sing 282 n n C15 H16 MXR sing 283 n n C16 H17 MXR sing 284 n n C16 H18 MXR sing 285 n n C17 H19 MXR sing 286 n n C18 H20 MXR sing 287 n n N19 H21 MXR sing 288 n n C20 H23 MXR sing 289 n n C20 H24 MXR sing 290 n n C20 H25 MXR sing 291 n n C21 H26 MXR sing 292 n n C21 H27 MXR sing 293 n n C25 H28 MXR sing 294 n n C25 H29 MXR sing 295 n n C25 H30 MXR sing 296 n n C26 H31 MXR sing 297 n n C26 H32 MXR sing 298 n n C26 H33 MXR sing 299 n n # _atom_sites.entry_id 7AJX _atom_sites.fract_transf_matrix[1][1] 0.017278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MXR A 1 601 444 MXR CMP . C 3 EDO A 1 602 601 EDO EDO . D 4 HOH A 1 701 37 HOH HOH . D 4 HOH A 2 702 104 HOH HOH . D 4 HOH A 3 703 70 HOH HOH . D 4 HOH A 4 704 86 HOH HOH . D 4 HOH A 5 705 94 HOH HOH . D 4 HOH A 6 706 98 HOH HOH . D 4 HOH A 7 707 76 HOH HOH . D 4 HOH A 8 708 97 HOH HOH . D 4 HOH A 9 709 95 HOH HOH . D 4 HOH A 10 710 38 HOH HOH . D 4 HOH A 11 711 60 HOH HOH . D 4 HOH A 12 712 45 HOH HOH . D 4 HOH A 13 713 16 HOH HOH . D 4 HOH A 14 714 80 HOH HOH . D 4 HOH A 15 715 90 HOH HOH . D 4 HOH A 16 716 13 HOH HOH . D 4 HOH A 17 717 93 HOH HOH . D 4 HOH A 18 718 22 HOH HOH . D 4 HOH A 19 719 43 HOH HOH . D 4 HOH A 20 720 35 HOH HOH . D 4 HOH A 21 721 24 HOH HOH . D 4 HOH A 22 722 25 HOH HOH . D 4 HOH A 23 723 31 HOH HOH . D 4 HOH A 24 724 61 HOH HOH . D 4 HOH A 25 725 91 HOH HOH . D 4 HOH A 26 726 79 HOH HOH . D 4 HOH A 27 727 2 HOH HOH . D 4 HOH A 28 728 55 HOH HOH . D 4 HOH A 29 729 14 HOH HOH . D 4 HOH A 30 730 54 HOH HOH . D 4 HOH A 31 731 84 HOH HOH . D 4 HOH A 32 732 83 HOH HOH . D 4 HOH A 33 733 102 HOH HOH . D 4 HOH A 34 734 101 HOH HOH . D 4 HOH A 35 735 27 HOH HOH . D 4 HOH A 36 736 51 HOH HOH . D 4 HOH A 37 737 29 HOH HOH . D 4 HOH A 38 738 18 HOH HOH . D 4 HOH A 39 739 11 HOH HOH . D 4 HOH A 40 740 19 HOH HOH . D 4 HOH A 41 741 75 HOH HOH . D 4 HOH A 42 742 17 HOH HOH . D 4 HOH A 43 743 9 HOH HOH . D 4 HOH A 44 744 36 HOH HOH . D 4 HOH A 45 745 48 HOH HOH . D 4 HOH A 46 746 64 HOH HOH . D 4 HOH A 47 747 47 HOH HOH . D 4 HOH A 48 748 12 HOH HOH . D 4 HOH A 49 749 44 HOH HOH . D 4 HOH A 50 750 81 HOH HOH . D 4 HOH A 51 751 99 HOH HOH . D 4 HOH A 52 752 1 HOH HOH . D 4 HOH A 53 753 32 HOH HOH . D 4 HOH A 54 754 7 HOH HOH . D 4 HOH A 55 755 56 HOH HOH . D 4 HOH A 56 756 42 HOH HOH . D 4 HOH A 57 757 3 HOH HOH . D 4 HOH A 58 758 62 HOH HOH . D 4 HOH A 59 759 46 HOH HOH . D 4 HOH A 60 760 87 HOH HOH . D 4 HOH A 61 761 28 HOH HOH . D 4 HOH A 62 762 66 HOH HOH . D 4 HOH A 63 763 34 HOH HOH . D 4 HOH A 64 764 105 HOH HOH . D 4 HOH A 65 765 89 HOH HOH . D 4 HOH A 66 766 65 HOH HOH . D 4 HOH A 67 767 10 HOH HOH . D 4 HOH A 68 768 100 HOH HOH . D 4 HOH A 69 769 49 HOH HOH . D 4 HOH A 70 770 63 HOH HOH . D 4 HOH A 71 771 103 HOH HOH . D 4 HOH A 72 772 15 HOH HOH . D 4 HOH A 73 773 6 HOH HOH . D 4 HOH A 74 774 26 HOH HOH . D 4 HOH A 75 775 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MXR . . . B 2 -10.894 10.822 3.558 1 75.33 0 C1 MXR 601 A 1 HETATM 2 C C2 MXR . . . B 2 -7.025 10.874 3.249 1 108.7 0 C2 MXR 601 A 1 HETATM 3 C C3 MXR . . . B 2 -9.964 12.09 3.778 1 82.35 0 C3 MXR 601 A 1 HETATM 4 C C4 MXR . . . B 2 -8.968 12.079 2.693 1 94.45 0 C4 MXR 601 A 1 HETATM 5 C C5 MXR . . . B 2 -7.952 10.09 2.123 1 97.17 0 C5 MXR 601 A 1 HETATM 6 O O6 MXR . . . B 2 -10.684 9.868 4.253 1 76.89 0 O6 MXR 601 A 1 HETATM 7 C C7 MXR . . . B 2 -10.69 13.469 4.052 1 77.06 0 C7 MXR 601 A 1 HETATM 8 O O8 MXR . . . B 2 -11.971 13.312 4.556 1 61.62 0 O8 MXR 601 A 1 HETATM 9 C C9 MXR . . . B 2 -10.741 14.48 2.835 1 76.19 0 C9 MXR 601 A 1 HETATM 10 N N10 MXR . . . B 2 -9.006 10.772 1.883 1 90.23 0 N10 MXR 601 A 1 HETATM 11 C C11 MXR . . . B 2 -8.031 8.615 2.475 1 93.97 0 C11 MXR 601 A 1 HETATM 12 O O12 MXR . . . B 2 -7.455 8.16 3.546 1 79.24 0 O12 MXR 601 A 1 HETATM 13 O O13 MXR . . . B 2 -8.645 7.833 1.726 1 85.09 0 O13 MXR 601 A 1 HETATM 14 S S14 MXR . . . B 2 -5.15 10.754 2.85 1 127.79 0 S14 MXR 601 A 1 HETATM 15 C C15 MXR . . . B 2 -4.114 9.71 4.1 1 124.84 0 C15 MXR 601 A 1 HETATM 16 C C16 MXR . . . B 2 -2.932 10.227 4.254 1 124.36 0 C16 MXR 601 A 1 HETATM 17 C C17 MXR . . . B 2 -2.933 11.108 5.671 1 131.18 0 C17 MXR 601 A 1 HETATM 18 C C18 MXR . . . B 2 -7.438 12.112 3.223 1 106.61 0 C18 MXR 601 A 1 HETATM 19 N N19 MXR . . . B 2 -4.01 10.68 6.348 1 126.38 0 N19 MXR 601 A 1 HETATM 20 C C20 MXR . . . B 2 -7.225 12.823 4.678 1 111.11 0 C20 MXR 601 A 1 HETATM 21 C C21 MXR . . . B 2 -4.798 9.634 5.58 1 123.3 0 C21 MXR 601 A 1 HETATM 22 C C22 MXR . . . B 2 -1.695 10.835 6.482 1 138.05 0 C22 MXR 601 A 1 HETATM 23 N N23 MXR . . . B 2 -0.377 11.504 6.148 1 140.08 0 N23 MXR 601 A 1 HETATM 24 O O24 MXR . . . B 2 -1.759 10.074 7.42 1 137.46 0 O24 MXR 601 A 1 HETATM 25 C C25 MXR . . . B 2 0.825 11.221 6.984 1 135.91 0 C25 MXR 601 A 1 HETATM 26 C C26 MXR . . . B 2 -0.285 12.451 5.006 1 132.09 0 C26 MXR 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 26 #