data_7AJZ
#
_model_server_result.job_id            5ilpGYTESZLigW8kdJDxJA 
_model_server_result.datetime_utc      '2024-10-10 19:18:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ajz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":101}' 
#
_entry.id    7AJZ 
#
_exptl.entry_id    7AJZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              307.297 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AJZ 
_cell.length_a            57.51 
_cell.length_b            92.558 
_cell.length_c            276.064 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AJZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F,G 1 1 
B,E,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C ALA 1 C ALA 2 1_555 C N DGL 2 C DGL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 sing 
covale ? covale2 C N ALA 1 C ALA 2 1_555 F C10 AMV . C AMV 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale3 C CD DGL 2 C DGL 3 1_555 C N API 3 C API 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 C C API 3 C API 4 1_555 C N DAL 4 C DAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
#
_chem_comp.formula           'C12 H21 N O8' 
_chem_comp.formula_weight    307.297 
_chem_comp.id                AMV 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'METHYL 2-(ACETYLAMINO)-3-O-[(1R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSIDE;methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucoside;methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-D-glucoside;methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 AMV sing 13 n n 
C1 O1 AMV sing 14 n n 
C1 O5 AMV sing 15 n n 
C1 H1 AMV sing 16 n n 
C2 C3 AMV sing 17 n n 
C2 N2 AMV sing 18 n n 
C2 H2 AMV sing 19 n n 
C3 C4 AMV sing 20 n n 
C3 O3 AMV sing 21 n n 
C3 H3 AMV sing 22 n n 
C4 C5 AMV sing 23 n n 
C4 O4 AMV sing 24 n n 
C4 H4 AMV sing 25 n n 
C5 C6 AMV sing 26 n n 
C5 O5 AMV sing 27 n n 
C5 H5 AMV sing 28 n n 
C6 O6 AMV sing 29 n n 
C6 H61 AMV sing 30 n n 
C6 H62 AMV sing 31 n n 
C7 C8 AMV sing 32 n n 
C7 O7 AMV doub 33 n n 
C7 N2 AMV sing 34 n n 
C8 H81 AMV sing 35 n n 
C8 H82 AMV sing 36 n n 
C8 H83 AMV sing 37 n n 
C9 C10 AMV sing 38 n n 
C9 C11 AMV sing 39 n n 
C9 O3 AMV sing 40 n n 
C9 H9 AMV sing 41 n n 
C10 O11 AMV doub 42 n n 
C10 OXT AMV sing 43 n n 
C11 H111 AMV sing 44 n n 
C11 H112 AMV sing 45 n n 
C11 H113 AMV sing 46 n n 
O1 C12 AMV sing 47 n n 
O4 HO4 AMV sing 48 n n 
O6 HO6 AMV sing 49 n n 
N2 HN2 AMV sing 50 n n 
C12 H121 AMV sing 51 n n 
C12 H122 AMV sing 52 n n 
C12 H123 AMV sing 53 n n 
OXT HX AMV sing 54 n n 
#
_atom_sites.entry_id                     7AJZ 
_atom_sites.fract_transf_matrix[1][1]    0.017388 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003622 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 EDO A 1 601 601 EDO EDO . 
E 3 EDO B 1 601 601 EDO EDO . 
F 4 AMV C 1 101 601 AMV M4P . 
G 5 HOH A 1 701 42 HOH HOH . 
G 5 HOH A 2 702 20 HOH HOH . 
G 5 HOH A 3 703 1 HOH HOH . 
G 5 HOH A 4 704 28 HOH HOH . 
G 5 HOH A 5 705 9 HOH HOH . 
G 5 HOH A 6 706 22 HOH HOH . 
G 5 HOH A 7 707 54 HOH HOH . 
G 5 HOH A 8 708 44 HOH HOH . 
G 5 HOH A 9 709 21 HOH HOH . 
G 5 HOH A 10 710 30 HOH HOH . 
G 5 HOH A 11 711 2 HOH HOH . 
G 5 HOH A 12 712 41 HOH HOH . 
G 5 HOH A 13 713 27 HOH HOH . 
H 5 HOH B 1 701 10 HOH HOH . 
H 5 HOH B 2 702 17 HOH HOH . 
H 5 HOH B 3 703 15 HOH HOH . 
H 5 HOH B 4 704 12 HOH HOH . 
H 5 HOH B 5 705 5 HOH HOH . 
H 5 HOH B 6 706 57 HOH HOH . 
H 5 HOH B 7 707 53 HOH HOH . 
H 5 HOH B 8 708 36 HOH HOH . 
H 5 HOH B 9 709 51 HOH HOH . 
H 5 HOH B 10 710 6 HOH HOH . 
H 5 HOH B 11 711 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AMV . . . F 4 98.398 116.567 291.428 1 217.06 ? C1 AMV 101 C 1 
HETATM 2 C C2 AMV . . . F 4 97.074 117.243 291.165 1 207.99 ? C2 AMV 101 C 1 
HETATM 3 C C3 AMV . . . F 4 95.935 116.58 291.965 1 214.5 ? C3 AMV 101 C 1 
HETATM 4 C C4 AMV . . . F 4 95.938 115.091 291.82 1 211.52 ? C4 AMV 101 C 1 
HETATM 5 C C5 AMV . . . F 4 97.359 114.489 292.015 1 194.33 ? C5 AMV 101 C 1 
HETATM 6 C C6 AMV . . . F 4 97.395 113.101 291.608 1 164 ? C6 AMV 101 C 1 
HETATM 7 C C7 AMV . . . F 4 97.652 119.226 292.51 1 161.62 ? C7 AMV 101 C 1 
HETATM 8 C C8 AMV . . . F 4 97.718 120.727 292.57 1 148.62 ? C8 AMV 101 C 1 
HETATM 9 C C9 AMV . . . F 4 93.544 116.955 292.249 1 204.5 ? C9 AMV 101 C 1 
HETATM 10 C C10 AMV . . . F 4 92.808 115.667 291.811 1 201.04 ? C10 AMV 101 C 1 
HETATM 11 C C11 AMV . . . F 4 93.842 116.967 293.743 1 196.53 ? C11 AMV 101 C 1 
HETATM 12 O O1 AMV . . . F 4 99.39 117.164 290.629 1 197.6 ? O1 AMV 101 C 1 
HETATM 13 O O3 AMV . . . F 4 94.712 117.148 291.456 1 212.29 ? O3 AMV 101 C 1 
HETATM 14 O O4 AMV . . . F 4 95.106 114.497 292.811 1 214.53 ? O4 AMV 101 C 1 
HETATM 15 O O5 AMV . . . F 4 98.286 115.186 291.157 1 221.94 ? O5 AMV 101 C 1 
HETATM 16 O O6 AMV . . . F 4 96.161 112.479 291.887 1 135.95 ? O6 AMV 101 C 1 
HETATM 17 O O7 AMV . . . F 4 98.016 118.514 293.44 1 150.65 ? O7 AMV 101 C 1 
HETATM 18 O O11 AMV . . . F 4 92.629 114.757 292.622 1 191.99 ? O11 AMV 101 C 1 
HETATM 19 N N2 AMV . . . F 4 97.164 118.69 291.377 1 180.84 ? N2 AMV 101 C 1 
HETATM 20 C C12 AMV . . . F 4 100.637 117.301 291.256 1 163.51 ? C12 AMV 101 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           20 
#