data_7AK2 # _model_server_result.job_id 1QpTxAWiHk296pBoh5LmEA _model_server_result.datetime_utc '2024-11-27 01:14:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ak2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 7AK2 # _exptl.entry_id 7AK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.94 _cell.angle_gamma 90 _cell.entry_id 7AK2 _cell.length_a 58.25 _cell.length_b 85.05 _cell.length_c 84.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 18 A GLY 144 1_555 A N SEP 19 A SEP 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C SEP 19 A SEP 145 1_555 A N HIS 20 A HIS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale3 A C GLN 194 A GLN 320 1_555 A N PTR 195 A PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C PTR 195 A PTR 321 1_555 A N ILE 196 A ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 B C GLY 18 B GLY 144 1_555 B N SEP 19 B SEP 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 B C SEP 19 B SEP 145 1_555 B N HIS 20 B HIS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale7 B C GLN 194 B GLN 320 1_555 B N PTR 195 B PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale8 B C PTR 195 B PTR 321 1_555 B N ILE 196 B ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7AK2 _atom_sites.fract_transf_matrix[1][1] 0.017167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005557 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RHH A 1 501 1482 RHH UNL . D 3 PO4 A 1 502 1483 PO4 PO4 . E 4 DMS A 1 503 1484 DMS DMS . F 2 RHH B 1 501 1482 RHH UNL . G 5 HOH A 1 601 2100 HOH HOH . G 5 HOH A 2 602 2004 HOH HOH . G 5 HOH A 3 603 2124 HOH HOH . G 5 HOH A 4 604 2064 HOH HOH . G 5 HOH A 5 605 2083 HOH HOH . G 5 HOH A 6 606 2065 HOH HOH . G 5 HOH A 7 607 2105 HOH HOH . G 5 HOH A 8 608 2066 HOH HOH . G 5 HOH A 9 609 2141 HOH HOH . G 5 HOH A 10 610 2117 HOH HOH . G 5 HOH A 11 611 2009 HOH HOH . G 5 HOH A 12 612 2115 HOH HOH . G 5 HOH A 13 613 2008 HOH HOH . G 5 HOH A 14 614 2094 HOH HOH . G 5 HOH A 15 615 2075 HOH HOH . G 5 HOH A 16 616 2119 HOH HOH . G 5 HOH A 17 617 2085 HOH HOH . G 5 HOH A 18 618 2138 HOH HOH . G 5 HOH A 19 619 2056 HOH HOH . G 5 HOH A 20 620 2095 HOH HOH . G 5 HOH A 21 621 2036 HOH HOH . G 5 HOH A 22 622 2048 HOH HOH . G 5 HOH A 23 623 2091 HOH HOH . G 5 HOH A 24 624 2003 HOH HOH . G 5 HOH A 25 625 2072 HOH HOH . G 5 HOH A 26 626 2017 HOH HOH . G 5 HOH A 27 627 2146 HOH HOH . G 5 HOH A 28 628 2040 HOH HOH . G 5 HOH A 29 629 2096 HOH HOH . G 5 HOH A 30 630 2029 HOH HOH . G 5 HOH A 31 631 2136 HOH HOH . G 5 HOH A 32 632 2145 HOH HOH . G 5 HOH A 33 633 2139 HOH HOH . G 5 HOH A 34 634 2025 HOH HOH . G 5 HOH A 35 635 2104 HOH HOH . G 5 HOH A 36 636 2016 HOH HOH . G 5 HOH A 37 637 2127 HOH HOH . G 5 HOH A 38 638 2125 HOH HOH . G 5 HOH A 39 639 2019 HOH HOH . G 5 HOH A 40 640 2093 HOH HOH . G 5 HOH A 41 641 2022 HOH HOH . G 5 HOH A 42 642 2122 HOH HOH . G 5 HOH A 43 643 2028 HOH HOH . G 5 HOH A 44 644 2070 HOH HOH . G 5 HOH A 45 645 2063 HOH HOH . G 5 HOH A 46 646 2067 HOH HOH . G 5 HOH A 47 647 2079 HOH HOH . G 5 HOH A 48 648 2031 HOH HOH . G 5 HOH A 49 649 2132 HOH HOH . G 5 HOH A 50 650 2052 HOH HOH . G 5 HOH A 51 651 2015 HOH HOH . G 5 HOH A 52 652 2077 HOH HOH . G 5 HOH A 53 653 2042 HOH HOH . G 5 HOH A 54 654 2101 HOH HOH . G 5 HOH A 55 655 2110 HOH HOH . G 5 HOH A 56 656 2038 HOH HOH . G 5 HOH A 57 657 2014 HOH HOH . G 5 HOH A 58 658 2088 HOH HOH . G 5 HOH A 59 659 2142 HOH HOH . G 5 HOH A 60 660 2006 HOH HOH . G 5 HOH A 61 661 2062 HOH HOH . G 5 HOH A 62 662 2123 HOH HOH . G 5 HOH A 63 663 2001 HOH HOH . G 5 HOH A 64 664 2007 HOH HOH . G 5 HOH A 65 665 2106 HOH HOH . G 5 HOH A 66 666 2013 HOH HOH . G 5 HOH A 67 667 2050 HOH HOH . G 5 HOH A 68 668 2045 HOH HOH . G 5 HOH A 69 669 2020 HOH HOH . G 5 HOH A 70 670 2078 HOH HOH . G 5 HOH A 71 671 2137 HOH HOH . G 5 HOH A 72 672 2057 HOH HOH . G 5 HOH A 73 673 2071 HOH HOH . G 5 HOH A 74 674 2133 HOH HOH . G 5 HOH A 75 675 2073 HOH HOH . G 5 HOH A 76 676 2106 HOH HOH . G 5 HOH A 77 677 2069 HOH HOH . G 5 HOH A 78 678 2005 HOH HOH . G 5 HOH A 79 679 2047 HOH HOH . G 5 HOH A 80 680 2002 HOH HOH . G 5 HOH A 81 681 2084 HOH HOH . G 5 HOH A 82 682 2018 HOH HOH . G 5 HOH A 83 683 2010 HOH HOH . G 5 HOH A 84 684 2034 HOH HOH . G 5 HOH A 85 685 2060 HOH HOH . G 5 HOH A 86 686 2027 HOH HOH . G 5 HOH A 87 687 2032 HOH HOH . G 5 HOH A 88 688 2131 HOH HOH . G 5 HOH A 89 689 2043 HOH HOH . G 5 HOH A 90 690 2053 HOH HOH . G 5 HOH A 91 691 2011 HOH HOH . G 5 HOH A 92 692 2116 HOH HOH . G 5 HOH A 93 693 2128 HOH HOH . G 5 HOH A 94 694 2089 HOH HOH . G 5 HOH A 95 695 2120 HOH HOH . G 5 HOH A 96 696 2107 HOH HOH . G 5 HOH A 97 697 2024 HOH HOH . G 5 HOH A 98 698 2046 HOH HOH . G 5 HOH A 99 699 2026 HOH HOH . G 5 HOH A 100 700 2058 HOH HOH . G 5 HOH A 101 701 2041 HOH HOH . G 5 HOH A 102 702 2061 HOH HOH . G 5 HOH A 103 703 2126 HOH HOH . G 5 HOH A 104 704 2074 HOH HOH . G 5 HOH A 105 705 2130 HOH HOH . G 5 HOH A 106 706 2021 HOH HOH . G 5 HOH A 107 707 2108 HOH HOH . G 5 HOH A 108 708 2086 HOH HOH . G 5 HOH A 109 709 2099 HOH HOH . G 5 HOH A 110 710 2113 HOH HOH . G 5 HOH A 111 711 2023 HOH HOH . G 5 HOH A 112 712 2037 HOH HOH . G 5 HOH A 113 713 2049 HOH HOH . G 5 HOH A 114 714 2114 HOH HOH . G 5 HOH A 115 715 2030 HOH HOH . G 5 HOH A 116 716 2143 HOH HOH . G 5 HOH A 117 717 2059 HOH HOH . G 5 HOH A 118 718 2012 HOH HOH . G 5 HOH A 119 719 2090 HOH HOH . G 5 HOH A 120 720 2097 HOH HOH . G 5 HOH A 121 721 2092 HOH HOH . G 5 HOH A 122 722 2076 HOH HOH . G 5 HOH A 123 723 2111 HOH HOH . G 5 HOH A 124 724 2135 HOH HOH . G 5 HOH A 125 725 2118 HOH HOH . G 5 HOH A 126 726 2112 HOH HOH . G 5 HOH A 127 727 2140 HOH HOH . G 5 HOH A 128 728 2080 HOH HOH . G 5 HOH A 129 729 2103 HOH HOH . G 5 HOH A 130 730 2129 HOH HOH . G 5 HOH A 131 731 2098 HOH HOH . G 5 HOH A 132 732 2054 HOH HOH . G 5 HOH A 133 733 2095 HOH HOH . G 5 HOH A 134 734 2109 HOH HOH . G 5 HOH A 135 735 2103 HOH HOH . G 5 HOH A 136 736 2096 HOH HOH . G 5 HOH A 137 737 2102 HOH HOH . G 5 HOH A 138 738 2044 HOH HOH . G 5 HOH A 139 739 2082 HOH HOH . G 5 HOH A 140 740 2068 HOH HOH . G 5 HOH A 141 741 2087 HOH HOH . H 5 HOH B 1 601 2046 HOH HOH . H 5 HOH B 2 602 2033 HOH HOH . H 5 HOH B 3 603 2094 HOH HOH . H 5 HOH B 4 604 2061 HOH HOH . H 5 HOH B 5 605 2028 HOH HOH . H 5 HOH B 6 606 2078 HOH HOH . H 5 HOH B 7 607 2079 HOH HOH . H 5 HOH B 8 608 2090 HOH HOH . H 5 HOH B 9 609 2041 HOH HOH . H 5 HOH B 10 610 2020 HOH HOH . H 5 HOH B 11 611 2086 HOH HOH . H 5 HOH B 12 612 2081 HOH HOH . H 5 HOH B 13 613 2024 HOH HOH . H 5 HOH B 14 614 2042 HOH HOH . H 5 HOH B 15 615 2048 HOH HOH . H 5 HOH B 16 616 2065 HOH HOH . H 5 HOH B 17 617 2053 HOH HOH . H 5 HOH B 18 618 2005 HOH HOH . H 5 HOH B 19 619 2003 HOH HOH . H 5 HOH B 20 620 2060 HOH HOH . H 5 HOH B 21 621 2089 HOH HOH . H 5 HOH B 22 622 2084 HOH HOH . H 5 HOH B 23 623 2049 HOH HOH . H 5 HOH B 24 624 2054 HOH HOH . H 5 HOH B 25 625 2016 HOH HOH . H 5 HOH B 26 626 2044 HOH HOH . H 5 HOH B 27 627 2099 HOH HOH . H 5 HOH B 28 628 2008 HOH HOH . H 5 HOH B 29 629 2074 HOH HOH . H 5 HOH B 30 630 2077 HOH HOH . H 5 HOH B 31 631 2051 HOH HOH . H 5 HOH B 32 632 2004 HOH HOH . H 5 HOH B 33 633 2073 HOH HOH . H 5 HOH B 34 634 2064 HOH HOH . H 5 HOH B 35 635 2051 HOH HOH . H 5 HOH B 36 636 2057 HOH HOH . H 5 HOH B 37 637 2013 HOH HOH . H 5 HOH B 38 638 2063 HOH HOH . H 5 HOH B 39 639 2014 HOH HOH . H 5 HOH B 40 640 2002 HOH HOH . H 5 HOH B 41 641 2022 HOH HOH . H 5 HOH B 42 642 2025 HOH HOH . H 5 HOH B 43 643 2062 HOH HOH . H 5 HOH B 44 644 2055 HOH HOH . H 5 HOH B 45 645 2066 HOH HOH . H 5 HOH B 46 646 2001 HOH HOH . H 5 HOH B 47 647 2012 HOH HOH . H 5 HOH B 48 648 2027 HOH HOH . H 5 HOH B 49 649 2045 HOH HOH . H 5 HOH B 50 650 2098 HOH HOH . H 5 HOH B 51 651 2021 HOH HOH . H 5 HOH B 52 652 2007 HOH HOH . H 5 HOH B 53 653 2033 HOH HOH . H 5 HOH B 54 654 2011 HOH HOH . H 5 HOH B 55 655 2047 HOH HOH . H 5 HOH B 56 656 2026 HOH HOH . H 5 HOH B 57 657 2070 HOH HOH . H 5 HOH B 58 658 2009 HOH HOH . H 5 HOH B 59 659 2056 HOH HOH . H 5 HOH B 60 660 2034 HOH HOH . H 5 HOH B 61 661 2059 HOH HOH . H 5 HOH B 62 662 2102 HOH HOH . H 5 HOH B 63 663 2036 HOH HOH . H 5 HOH B 64 664 2050 HOH HOH . H 5 HOH B 65 665 2058 HOH HOH . H 5 HOH B 66 666 2031 HOH HOH . H 5 HOH B 67 667 2037 HOH HOH . H 5 HOH B 68 668 2018 HOH HOH . H 5 HOH B 69 669 2068 HOH HOH . H 5 HOH B 70 670 2019 HOH HOH . H 5 HOH B 71 671 2085 HOH HOH . H 5 HOH B 72 672 2010 HOH HOH . H 5 HOH B 73 673 2093 HOH HOH . H 5 HOH B 74 674 2072 HOH HOH . H 5 HOH B 75 675 2038 HOH HOH . H 5 HOH B 76 676 2023 HOH HOH . H 5 HOH B 77 677 2035 HOH HOH . H 5 HOH B 78 678 2035 HOH HOH . H 5 HOH B 79 679 2083 HOH HOH . H 5 HOH B 80 680 2092 HOH HOH . H 5 HOH B 81 681 2040 HOH HOH . H 5 HOH B 82 682 2105 HOH HOH . H 5 HOH B 83 683 2080 HOH HOH . H 5 HOH B 84 684 2043 HOH HOH . H 5 HOH B 85 685 2032 HOH HOH . H 5 HOH B 86 686 2006 HOH HOH . H 5 HOH B 87 687 2088 HOH HOH . H 5 HOH B 88 688 2039 HOH HOH . H 5 HOH B 89 689 2144 HOH HOH . H 5 HOH B 90 690 2075 HOH HOH . H 5 HOH B 91 691 2082 HOH HOH . H 5 HOH B 92 692 2055 HOH HOH . H 5 HOH B 93 693 2030 HOH HOH . H 5 HOH B 94 694 2015 HOH HOH . H 5 HOH B 95 695 2052 HOH HOH . H 5 HOH B 96 696 2087 HOH HOH . H 5 HOH B 97 697 2039 HOH HOH . H 5 HOH B 98 698 2104 HOH HOH . H 5 HOH B 99 699 2097 HOH HOH . H 5 HOH B 100 700 2071 HOH HOH . H 5 HOH B 101 701 2121 HOH HOH . H 5 HOH B 102 702 2076 HOH HOH . H 5 HOH B 103 703 2091 HOH HOH . H 5 HOH B 104 704 2067 HOH HOH . H 5 HOH B 105 705 2100 HOH HOH . H 5 HOH B 106 706 2081 HOH HOH . H 5 HOH B 107 707 2029 HOH HOH . H 5 HOH B 108 708 2101 HOH HOH . H 5 HOH B 109 709 2017 HOH HOH . H 5 HOH B 110 710 2134 HOH HOH . H 5 HOH B 111 711 2069 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 -11.009 12.117 44.734 1 58.33 ? S DMS 503 A 1 HETATM 2 O O DMS . . . E 4 -11.259 10.849 44.012 1 56.24 ? O DMS 503 A 1 HETATM 3 C C1 DMS . . . E 4 -12.226 13.231 44.082 1 65.61 ? C1 DMS 503 A 1 HETATM 4 C C2 DMS . . . E 4 -9.602 12.862 43.991 1 61.32 ? C2 DMS 503 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 4 #