data_7AK9 # _model_server_result.job_id 5swmyLrXbrdXUFs7e-A6Bg _model_server_result.datetime_utc '2024-11-22 18:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ak9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 7AK9 # _exptl.entry_id 7AK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 687.554 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DEPHOSPHO COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AK9 _cell.length_a 56.671 _cell.length_b 76.633 _cell.length_c 119.655 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C21 H35 N7 O13 P2 S' _chem_comp.formula_weight 687.554 _chem_comp.id COD _chem_comp.mon_nstd_flag . _chem_comp.name 'DEPHOSPHO COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 COD sing 70 n y N1 C6 COD doub 71 n y C2 N3 COD doub 72 n y C2 HC2 COD sing 73 n n N3 C4 COD sing 74 n y C4 C5 COD doub 75 n y C4 N10 COD sing 76 n y C5 C6 COD sing 77 n y C5 N8 COD sing 78 n y C6 N7 COD sing 79 n n N7 HN71 COD sing 80 n n N7 HN72 COD sing 81 n n N8 C9 COD doub 82 n y C9 N10 COD sing 83 n y C9 HC9 COD sing 84 n n N10 C11 COD sing 85 n n C11 C12 COD sing 86 n n C11 O17 COD sing 87 n n C11 HC11 COD sing 88 n n C12 O13 COD sing 89 n n C12 C14 COD sing 90 n n C12 HC12 COD sing 91 n n O13 HO13 COD sing 92 n n C14 O15 COD sing 93 n n C14 C16 COD sing 94 n n C14 HC14 COD sing 95 n n O15 HO15 COD sing 96 n n C16 O17 COD sing 97 n n C16 C18 COD sing 98 n n C16 HC16 COD sing 99 n n C18 O19 COD sing 100 n n C18 H181 COD sing 101 n n C18 H182 COD sing 102 n n O19 P20 COD sing 103 n n P20 O21 COD sing 104 n n P20 O22 COD doub 105 n n P20 O23 COD sing 106 n n O21 HO21 COD sing 107 n n O23 P24 COD sing 108 n n P24 O25 COD sing 109 n n P24 O26 COD doub 110 n n P24 O27 COD sing 111 n n O25 HO25 COD sing 112 n n O27 C28 COD sing 113 n n C28 C29 COD sing 114 n n C28 H281 COD sing 115 n n C28 H282 COD sing 116 n n C29 C30 COD sing 117 n n C29 C31 COD sing 118 n n C29 C32 COD sing 119 n n C30 H301 COD sing 120 n n C30 H302 COD sing 121 n n C30 H303 COD sing 122 n n C31 H311 COD sing 123 n n C31 H312 COD sing 124 n n C31 H313 COD sing 125 n n C32 O33 COD sing 126 n n C32 C34 COD sing 127 n n C32 HC32 COD sing 128 n n O33 HO33 COD sing 129 n n C34 O35 COD doub 130 n n C34 N36 COD sing 131 n n N36 C37 COD sing 132 n n N36 HN36 COD sing 133 n n C37 C38 COD sing 134 n n C37 H371 COD sing 135 n n C37 H372 COD sing 136 n n C38 C39 COD sing 137 n n C38 H381 COD sing 138 n n C38 H382 COD sing 139 n n C39 O40 COD doub 140 n n C39 N41 COD sing 141 n n N41 C42 COD sing 142 n n N41 HN41 COD sing 143 n n C42 C43 COD sing 144 n n C42 H421 COD sing 145 n n C42 H422 COD sing 146 n n C43 S44 COD sing 147 n n C43 H431 COD sing 148 n n C43 H432 COD sing 149 n n S44 HS44 COD sing 150 n n # _atom_sites.entry_id 7AK9 _atom_sites.fract_transf_matrix[1][1] 0.017646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013049 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 COD A 1 201 177 COD COA . F 3 COD B 1 201 177 COD COA . G 4 HOH A 1 301 44 HOH HOH . G 4 HOH A 2 302 30 HOH HOH . G 4 HOH A 3 303 5 HOH HOH . G 4 HOH A 4 304 52 HOH HOH . G 4 HOH A 5 305 61 HOH HOH . G 4 HOH A 6 306 48 HOH HOH . G 4 HOH A 7 307 60 HOH HOH . G 4 HOH A 8 308 38 HOH HOH . G 4 HOH A 9 309 16 HOH HOH . G 4 HOH A 10 310 49 HOH HOH . G 4 HOH A 11 311 54 HOH HOH . G 4 HOH A 12 312 56 HOH HOH . G 4 HOH A 13 313 43 HOH HOH . G 4 HOH A 14 314 57 HOH HOH . G 4 HOH A 15 315 8 HOH HOH . G 4 HOH A 16 316 13 HOH HOH . G 4 HOH A 17 317 20 HOH HOH . G 4 HOH A 18 318 1 HOH HOH . G 4 HOH A 19 319 41 HOH HOH . G 4 HOH A 20 320 15 HOH HOH . G 4 HOH A 21 321 7 HOH HOH . G 4 HOH A 22 322 6 HOH HOH . G 4 HOH A 23 323 68 HOH HOH . G 4 HOH A 24 324 69 HOH HOH . G 4 HOH A 25 325 17 HOH HOH . G 4 HOH A 26 326 25 HOH HOH . G 4 HOH A 27 327 37 HOH HOH . G 4 HOH A 28 328 64 HOH HOH . G 4 HOH A 29 329 10 HOH HOH . G 4 HOH A 30 330 24 HOH HOH . G 4 HOH A 31 331 55 HOH HOH . G 4 HOH A 32 332 53 HOH HOH . G 4 HOH A 33 333 59 HOH HOH . G 4 HOH A 34 334 23 HOH HOH . G 4 HOH A 35 335 50 HOH HOH . G 4 HOH A 36 336 40 HOH HOH . G 4 HOH A 37 337 51 HOH HOH . G 4 HOH A 38 338 31 HOH HOH . G 4 HOH A 39 339 39 HOH HOH . H 4 HOH B 1 301 12 HOH HOH . H 4 HOH B 2 302 29 HOH HOH . H 4 HOH B 3 303 63 HOH HOH . H 4 HOH B 4 304 65 HOH HOH . H 4 HOH B 5 305 14 HOH HOH . H 4 HOH B 6 306 9 HOH HOH . H 4 HOH B 7 307 18 HOH HOH . H 4 HOH B 8 308 21 HOH HOH . H 4 HOH B 9 309 3 HOH HOH . H 4 HOH B 10 310 26 HOH HOH . H 4 HOH B 11 311 34 HOH HOH . H 4 HOH B 12 312 58 HOH HOH . H 4 HOH B 13 313 67 HOH HOH . H 4 HOH B 14 314 19 HOH HOH . H 4 HOH B 15 315 47 HOH HOH . H 4 HOH B 16 316 28 HOH HOH . H 4 HOH B 17 317 46 HOH HOH . H 4 HOH B 18 318 27 HOH HOH . H 4 HOH B 19 319 66 HOH HOH . H 4 HOH B 20 320 22 HOH HOH . H 4 HOH B 21 321 45 HOH HOH . H 4 HOH B 22 322 35 HOH HOH . I 4 HOH C 1 101 42 HOH HOH . I 4 HOH C 2 102 11 HOH HOH . I 4 HOH C 3 103 4 HOH HOH . I 4 HOH C 4 104 36 HOH HOH . J 4 HOH D 1 101 32 HOH HOH . J 4 HOH D 2 102 62 HOH HOH . J 4 HOH D 3 103 2 HOH HOH . J 4 HOH D 4 104 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 COD . . . E 3 15.4 37.153 48.97 1 51.23 ? N1 COD 201 A 1 HETATM 2 C C2 COD . . . E 3 16.138 38.161 48.484 1 51.62 ? C2 COD 201 A 1 HETATM 3 N N3 COD . . . E 3 17.413 38.159 48.099 1 49.83 ? N3 COD 201 A 1 HETATM 4 C C4 COD . . . E 3 17.955 36.94 48.256 1 47.98 ? C4 COD 201 A 1 HETATM 5 C C5 COD . . . E 3 17.329 35.808 48.742 1 46.24 ? C5 COD 201 A 1 HETATM 6 C C6 COD . . . E 3 15.979 35.931 49.111 1 48.75 ? C6 COD 201 A 1 HETATM 7 N N7 COD . . . E 3 15.264 34.928 49.614 1 50.44 ? N7 COD 201 A 1 HETATM 8 N N8 COD . . . E 3 18.207 34.732 48.765 1 49.39 ? N8 COD 201 A 1 HETATM 9 C C9 COD . . . E 3 19.338 35.227 48.312 1 50.2 ? C9 COD 201 A 1 HETATM 10 N N10 COD . . . E 3 19.239 36.571 47.965 1 48.68 ? N10 COD 201 A 1 HETATM 11 C C11 COD . . . E 3 20.32 37.453 47.471 1 47.79 ? C11 COD 201 A 1 HETATM 12 C C12 COD . . . E 3 20.054 38.262 46.2 1 48.18 ? C12 COD 201 A 1 HETATM 13 O O13 COD . . . E 3 21.14 38.149 45.305 1 49.38 ? O13 COD 201 A 1 HETATM 14 C C14 COD . . . E 3 19.951 39.715 46.67 1 49.53 ? C14 COD 201 A 1 HETATM 15 O O15 COD . . . E 3 20.569 40.614 45.741 1 53.3 ? O15 COD 201 A 1 HETATM 16 C C16 COD . . . E 3 20.709 39.717 47.99 1 48.28 ? C16 COD 201 A 1 HETATM 17 O O17 COD . . . E 3 20.611 38.365 48.504 1 47.88 ? O17 COD 201 A 1 HETATM 18 C C18 COD . . . E 3 20.157 40.691 49.004 1 48.09 ? C18 COD 201 A 1 HETATM 19 O O19 COD . . . E 3 20.984 40.686 50.2 1 45.64 ? O19 COD 201 A 1 HETATM 20 P P20 COD . . . E 3 21.6 42.043 50.788 1 41.67 ? P20 COD 201 A 1 HETATM 21 O O21 COD . . . E 3 22.615 41.701 51.82 1 43.26 -1 O21 COD 201 A 1 HETATM 22 O O22 COD . . . E 3 21.966 42.992 49.681 1 39.87 ? O22 COD 201 A 1 HETATM 23 O O23 COD . . . E 3 20.299 42.576 51.528 1 44.24 ? O23 COD 201 A 1 HETATM 24 P P24 COD . . . E 3 19.226 43.684 51.127 1 40.47 ? P24 COD 201 A 1 HETATM 25 O O25 COD . . . E 3 18.779 43.495 49.718 1 43.96 -1 O25 COD 201 A 1 HETATM 26 O O26 COD . . . E 3 19.8 45.031 51.422 1 34.45 ? O26 COD 201 A 1 HETATM 27 O O27 COD . . . E 3 18.092 43.121 52.117 1 44.66 ? O27 COD 201 A 1 HETATM 28 C C28 COD . . . E 3 16.79 43.772 52.083 1 58.71 ? C28 COD 201 A 1 HETATM 29 C C29 COD . . . E 3 15.687 42.91 52.708 1 56.2 ? C29 COD 201 A 1 HETATM 30 C C30 COD . . . E 3 16.307 41.84 53.621 1 51.74 ? C30 COD 201 A 1 HETATM 31 C C31 COD . . . E 3 14.879 42.248 51.581 1 54.05 ? C31 COD 201 A 1 HETATM 32 C C32 COD . . . E 3 14.743 43.817 53.521 1 60.03 ? C32 COD 201 A 1 HETATM 33 O O33 COD . . . E 3 14.572 45.095 52.922 1 61.66 ? O33 COD 201 A 1 HETATM 34 C C34 COD . . . E 3 13.349 43.255 53.695 1 62.42 ? C34 COD 201 A 1 HETATM 35 O O35 COD . . . E 3 13.15 42.043 53.782 1 75.31 ? O35 COD 201 A 1 HETATM 36 N N36 COD . . . E 3 12.377 44.148 53.739 1 56.31 ? N36 COD 201 A 1 HETATM 37 C C37 COD . . . E 3 10.981 43.764 53.706 1 55.96 ? C37 COD 201 A 1 HETATM 38 C C38 COD . . . E 3 10.378 44.041 52.365 1 55.65 ? C38 COD 201 A 1 HETATM 39 C C39 COD . . . E 3 9.572 42.858 51.883 1 60.6 ? C39 COD 201 A 1 HETATM 40 O O40 COD . . . E 3 9.412 41.866 52.601 1 60.23 ? O40 COD 201 A 1 HETATM 41 N N41 COD . . . E 3 9.047 42.944 50.655 1 63.23 ? N41 COD 201 A 1 HETATM 42 C C42 COD . . . E 3 9.451 43.909 49.646 1 64.25 ? C42 COD 201 A 1 HETATM 43 C C43 COD . . . E 3 10.675 43.464 48.872 1 66.03 ? C43 COD 201 A 1 HETATM 44 S S44 COD . . . E 3 10.989 44.633 47.526 1 71.23 ? S44 COD 201 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #