data_7AKB
#
_model_server_result.job_id            h9xE0Nc8QNPUIOtiz_wNaw 
_model_server_result.datetime_utc      '2025-01-12 01:02:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7akb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    7AKB 
#
_exptl.entry_id    7AKB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              440.297 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[3-[2-(6-bromanylpyridin-2-yl)oxyethyl]-2-methyl-imidazo[4,5-b]pyridin-5-yl]pyridine-2,6-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.81 
_cell.angle_gamma         90 
_cell.entry_id            7AKB 
_cell.length_a            57.48 
_cell.length_b            83.82 
_cell.length_c            83.73 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AKB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 18 A GLY 144 1_555 A N SEP 19 A SEP 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C SEP 19 A SEP 145 1_555 A N HIS 20 A HIS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale3 A C GLN 194 A GLN 320 1_555 A N PTR 195 A PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale4 A C PTR 195 A PTR 321 1_555 A N ILE 196 A ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale5 B C GLY 18 B GLY 144 1_555 B N SEP 19 B SEP 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale6 B C SEP 19 B SEP 145 1_555 B N HIS 20 B HIS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale7 B C GLN 194 B GLN 320 1_555 B N PTR 195 B PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale8 B C PTR 195 B PTR 321 1_555 B N ILE 196 B ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
#
_chem_comp.formula           'C19 H18 Br N7 O' 
_chem_comp.formula_weight    440.297 
_chem_comp.id                RJZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[3-[2-(6-bromanylpyridin-2-yl)oxyethyl]-2-methyl-imidazo[4,5-b]pyridin-5-yl]pyridine-2,6-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N7 C18 RJZ sing 306 n n 
N6 C18 RJZ doub 307 n y 
N6 C17 RJZ sing 308 n y 
BR1 C14 RJZ sing 309 n n 
C18 C19 RJZ sing 310 n y 
N5 C17 RJZ sing 311 n n 
C17 C16 RJZ doub 312 n y 
C13 C14 RJZ doub 313 n y 
C13 C12 RJZ sing 314 n y 
C14 N4 RJZ sing 315 n y 
C19 C15 RJZ doub 316 n y 
C12 C11 RJZ doub 317 n y 
C16 C15 RJZ sing 318 n y 
C15 C6 RJZ sing 319 n n 
N4 C10 RJZ doub 320 n y 
C11 C10 RJZ sing 321 n y 
C10 O1 RJZ sing 322 n n 
C6 N2 RJZ doub 323 n y 
C6 C5 RJZ sing 324 n y 
N2 C7 RJZ sing 325 n y 
C8 C9 RJZ sing 326 n n 
C8 N3 RJZ sing 327 n n 
C5 C4 RJZ doub 328 n y 
O1 C9 RJZ sing 329 n n 
C7 N3 RJZ sing 330 n y 
C7 C3 RJZ doub 331 n y 
N3 C2 RJZ sing 332 n y 
C4 C3 RJZ sing 333 n y 
C3 N1 RJZ sing 334 n y 
C2 N1 RJZ doub 335 n y 
C2 C1 RJZ sing 336 n n 
C1 H1 RJZ sing 337 n n 
C1 H2 RJZ sing 338 n n 
C1 H3 RJZ sing 339 n n 
C4 H4 RJZ sing 340 n n 
C5 H5 RJZ sing 341 n n 
N5 H6 RJZ sing 342 n n 
N5 H7 RJZ sing 343 n n 
N7 H8 RJZ sing 344 n n 
N7 H9 RJZ sing 345 n n 
C8 H10 RJZ sing 346 n n 
C8 H11 RJZ sing 347 n n 
C9 H12 RJZ sing 348 n n 
C9 H13 RJZ sing 349 n n 
C11 H14 RJZ sing 350 n n 
C12 H15 RJZ sing 351 n n 
C13 H16 RJZ sing 352 n n 
C16 H17 RJZ sing 353 n n 
C19 H18 RJZ sing 354 n n 
#
_atom_sites.entry_id                     7AKB 
_atom_sites.fract_transf_matrix[1][1]    0.017397 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005589 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01193 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012544 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RJZ A 1 501 1482 RJZ UNL . 
D 2 RJZ B 1 501 1482 RJZ UNL . 
E 3 HOH A 1 601 2003 HOH HOH . 
E 3 HOH A 2 602 2011 HOH HOH . 
E 3 HOH A 3 603 2013 HOH HOH . 
E 3 HOH A 4 604 2021 HOH HOH . 
E 3 HOH A 5 605 2042 HOH HOH . 
E 3 HOH A 6 606 2015 HOH HOH . 
E 3 HOH A 7 607 2036 HOH HOH . 
E 3 HOH A 8 608 2035 HOH HOH . 
E 3 HOH A 9 609 2037 HOH HOH . 
E 3 HOH A 10 610 2017 HOH HOH . 
E 3 HOH A 11 611 2018 HOH HOH . 
E 3 HOH A 12 612 2033 HOH HOH . 
E 3 HOH A 13 613 2005 HOH HOH . 
E 3 HOH A 14 614 2031 HOH HOH . 
E 3 HOH A 15 615 2039 HOH HOH . 
E 3 HOH A 16 616 2041 HOH HOH . 
E 3 HOH A 17 617 2022 HOH HOH . 
E 3 HOH A 18 618 2002 HOH HOH . 
E 3 HOH A 19 619 2025 HOH HOH . 
E 3 HOH A 20 620 2016 HOH HOH . 
E 3 HOH A 21 621 2023 HOH HOH . 
E 3 HOH A 22 622 2027 HOH HOH . 
E 3 HOH A 23 623 2007 HOH HOH . 
E 3 HOH A 24 624 2019 HOH HOH . 
E 3 HOH A 25 625 2004 HOH HOH . 
E 3 HOH A 26 626 2026 HOH HOH . 
E 3 HOH A 27 627 2043 HOH HOH . 
E 3 HOH A 28 628 2001 HOH HOH . 
E 3 HOH A 29 629 2044 HOH HOH . 
E 3 HOH A 30 630 2024 HOH HOH . 
E 3 HOH A 31 631 2038 HOH HOH . 
E 3 HOH A 32 632 2014 HOH HOH . 
E 3 HOH A 33 633 2028 HOH HOH . 
E 3 HOH A 34 634 2012 HOH HOH . 
E 3 HOH A 35 635 2010 HOH HOH . 
E 3 HOH A 36 636 2029 HOH HOH . 
E 3 HOH A 37 637 2020 HOH HOH . 
E 3 HOH A 38 638 2040 HOH HOH . 
E 3 HOH A 39 639 2032 HOH HOH . 
E 3 HOH A 40 640 2008 HOH HOH . 
E 3 HOH A 41 641 2028 HOH HOH . 
E 3 HOH A 42 642 2030 HOH HOH . 
E 3 HOH A 43 643 2034 HOH HOH . 
F 3 HOH B 1 601 2038 HOH HOH . 
F 3 HOH B 2 602 2031 HOH HOH . 
F 3 HOH B 3 603 2006 HOH HOH . 
F 3 HOH B 4 604 2009 HOH HOH . 
F 3 HOH B 5 605 2008 HOH HOH . 
F 3 HOH B 6 606 2011 HOH HOH . 
F 3 HOH B 7 607 2033 HOH HOH . 
F 3 HOH B 8 608 2022 HOH HOH . 
F 3 HOH B 9 609 2002 HOH HOH . 
F 3 HOH B 10 610 2030 HOH HOH . 
F 3 HOH B 11 611 2005 HOH HOH . 
F 3 HOH B 12 612 2026 HOH HOH . 
F 3 HOH B 13 613 2021 HOH HOH . 
F 3 HOH B 14 614 2017 HOH HOH . 
F 3 HOH B 15 615 2027 HOH HOH . 
F 3 HOH B 16 616 2003 HOH HOH . 
F 3 HOH B 17 617 2004 HOH HOH . 
F 3 HOH B 18 618 2014 HOH HOH . 
F 3 HOH B 19 619 2025 HOH HOH . 
F 3 HOH B 20 620 2012 HOH HOH . 
F 3 HOH B 21 621 2010 HOH HOH . 
F 3 HOH B 22 622 2024 HOH HOH . 
F 3 HOH B 23 623 2023 HOH HOH . 
F 3 HOH B 24 624 2036 HOH HOH . 
F 3 HOH B 25 625 2032 HOH HOH . 
F 3 HOH B 26 626 2034 HOH HOH . 
F 3 HOH B 27 627 2007 HOH HOH . 
F 3 HOH B 28 628 2001 HOH HOH . 
F 3 HOH B 29 629 2020 HOH HOH . 
F 3 HOH B 30 630 2037 HOH HOH . 
F 3 HOH B 31 631 2009 HOH HOH . 
F 3 HOH B 32 632 2039 HOH HOH . 
F 3 HOH B 33 633 2019 HOH HOH . 
F 3 HOH B 34 634 2015 HOH HOH . 
F 3 HOH B 35 635 2029 HOH HOH . 
F 3 HOH B 36 636 2035 HOH HOH . 
F 3 HOH B 37 637 2016 HOH HOH . 
F 3 HOH B 38 638 2018 HOH HOH . 
F 3 HOH B 39 639 2013 HOH HOH . 
F 3 HOH B 40 640 2006 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RJZ . . . C 2 4.14 6.933 38.77 1 41.61 ? C1 RJZ 501 A 1 
HETATM 2 N N1 RJZ . . . C 2 1.837 6.121 38.426 1 41.81 ? N1 RJZ 501 A 1 
HETATM 3 O O1 RJZ . . . C 2 5.105 3.38 36.366 1 67.74 ? O1 RJZ 501 A 1 
HETATM 4 C C2 RJZ . . . C 2 3.074 6.257 38.003 1 40.32 ? C2 RJZ 501 A 1 
HETATM 5 N N2 RJZ . . . C 2 1.769 4.532 35.272 1 36.76 ? N2 RJZ 501 A 1 
HETATM 6 C C3 RJZ . . . C 2 1.18 5.432 37.41 1 38.16 ? C3 RJZ 501 A 1 
HETATM 7 N N3 RJZ . . . C 2 3.265 5.685 36.736 1 44.03 ? N3 RJZ 501 A 1 
HETATM 8 C C4 RJZ . . . C 2 -0.136 5.01 37.289 1 34.93 ? C4 RJZ 501 A 1 
HETATM 9 N N4 RJZ . . . C 2 5.481 3.723 34.144 1 65.99 ? N4 RJZ 501 A 1 
HETATM 10 C C5 RJZ . . . C 2 -0.472 4.342 36.143 1 37.41 ? C5 RJZ 501 A 1 
HETATM 11 N N5 RJZ . . . C 2 -2.369 1.425 32.205 1 33.77 ? N5 RJZ 501 A 1 
HETATM 12 C C6 RJZ . . . C 2 0.494 4.128 35.126 1 36.11 ? C6 RJZ 501 A 1 
HETATM 13 N N6 RJZ . . . C 2 -0.203 1.892 31.537 1 39.78 ? N6 RJZ 501 A 1 
HETATM 14 C C7 RJZ . . . C 2 2.063 5.167 36.383 1 37.63 ? C7 RJZ 501 A 1 
HETATM 15 N N7 RJZ . . . C 2 1.94 2.333 30.841 1 36.81 ? N7 RJZ 501 A 1 
HETATM 16 C C8 RJZ . . . C 2 4.484 5.634 35.921 1 52.15 ? C8 RJZ 501 A 1 
HETATM 17 C C9 RJZ . . . C 2 5.534 4.731 36.529 1 63.65 ? C9 RJZ 501 A 1 
HETATM 18 C C10 RJZ . . . C 2 4.972 2.942 35.087 1 67.75 ? C10 RJZ 501 A 1 
HETATM 19 C C11 RJZ . . . C 2 4.338 1.737 34.797 1 66.89 ? C11 RJZ 501 A 1 
HETATM 20 C C12 RJZ . . . C 2 4.238 1.353 33.495 1 58.83 ? C12 RJZ 501 A 1 
HETATM 21 C C13 RJZ . . . C 2 4.755 2.154 32.5 1 61.5 ? C13 RJZ 501 A 1 
HETATM 22 C C14 RJZ . . . C 2 5.363 3.326 32.894 1 64.92 ? C14 RJZ 501 A 1 
HETATM 23 C C15 RJZ . . . C 2 0.228 3.38 33.876 1 34.08 ? C15 RJZ 501 A 1 
HETATM 24 C C16 RJZ . . . C 2 -0.99 2.755 33.644 1 34.02 ? C16 RJZ 501 A 1 
HETATM 25 C C17 RJZ . . . C 2 -1.185 2.024 32.457 1 36.17 ? C17 RJZ 501 A 1 
HETATM 26 C C18 RJZ . . . C 2 0.989 2.485 31.76 1 38.22 ? C18 RJZ 501 A 1 
HETATM 27 C C19 RJZ . . . C 2 1.23 3.24 32.92 1 37.57 ? C19 RJZ 501 A 1 
HETATM 28 BR BR1 RJZ . . . C 2 6.081 4.516 31.594 0.5 65.64 ? BR1 RJZ 501 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#