data_7AKC # _model_server_result.job_id PqswD04ypGXmVix-nW_6JA _model_server_result.datetime_utc '2024-11-14 20:48:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7akc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 7AKC # _exptl.entry_id 7AKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AKC _cell.length_a 94.029 _cell.length_b 94.029 _cell.length_c 73.236 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 164 A ILE 772 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc2 A O PHE 167 A PHE 775 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A O VAL 170 A VAL 778 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc4 A O SER 276 A SER 884 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc5 A O ALA 277 A ALA 885 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? metalc ? metalc6 A O SER 279 A SER 887 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 A O ALA 281 A ALA 889 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc8 A O GLY 283 A GLY 891 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc9 B NA NA . A NA 1001 1_555 D O HOH . A HOH 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc10 B NA NA . A NA 1001 1_555 D O HOH . A HOH 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc11 B NA NA . A NA 1001 1_555 D O HOH . A HOH 1251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc12 C NA NA . A NA 1002 1_555 D O HOH . A HOH 1240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7AKC _atom_sites.fract_transf_matrix[1][1] 0.010635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1001 1 NA NA . C 2 NA A 1 1002 2 NA NA . D 3 HOH A 1 1101 213 HOH HOH . D 3 HOH A 2 1102 225 HOH HOH . D 3 HOH A 3 1103 87 HOH HOH . D 3 HOH A 4 1104 229 HOH HOH . D 3 HOH A 5 1105 143 HOH HOH . D 3 HOH A 6 1106 35 HOH HOH . D 3 HOH A 7 1107 100 HOH HOH . D 3 HOH A 8 1108 126 HOH HOH . D 3 HOH A 9 1109 214 HOH HOH . D 3 HOH A 10 1110 21 HOH HOH . D 3 HOH A 11 1111 80 HOH HOH . D 3 HOH A 12 1112 227 HOH HOH . D 3 HOH A 13 1113 104 HOH HOH . D 3 HOH A 14 1114 155 HOH HOH . D 3 HOH A 15 1115 105 HOH HOH . D 3 HOH A 16 1116 202 HOH HOH . D 3 HOH A 17 1117 92 HOH HOH . D 3 HOH A 18 1118 119 HOH HOH . D 3 HOH A 19 1119 83 HOH HOH . D 3 HOH A 20 1120 15 HOH HOH . D 3 HOH A 21 1121 7 HOH HOH . D 3 HOH A 22 1122 120 HOH HOH . D 3 HOH A 23 1123 121 HOH HOH . D 3 HOH A 24 1124 194 HOH HOH . D 3 HOH A 25 1125 12 HOH HOH . D 3 HOH A 26 1126 207 HOH HOH . D 3 HOH A 27 1127 50 HOH HOH . D 3 HOH A 28 1128 93 HOH HOH . D 3 HOH A 29 1129 123 HOH HOH . D 3 HOH A 30 1130 114 HOH HOH . D 3 HOH A 31 1131 118 HOH HOH . D 3 HOH A 32 1132 73 HOH HOH . D 3 HOH A 33 1133 96 HOH HOH . D 3 HOH A 34 1134 74 HOH HOH . D 3 HOH A 35 1135 75 HOH HOH . D 3 HOH A 36 1136 117 HOH HOH . D 3 HOH A 37 1137 164 HOH HOH . D 3 HOH A 38 1138 72 HOH HOH . D 3 HOH A 39 1139 103 HOH HOH . D 3 HOH A 40 1140 156 HOH HOH . D 3 HOH A 41 1141 76 HOH HOH . D 3 HOH A 42 1142 142 HOH HOH . D 3 HOH A 43 1143 55 HOH HOH . D 3 HOH A 44 1144 71 HOH HOH . D 3 HOH A 45 1145 68 HOH HOH . D 3 HOH A 46 1146 141 HOH HOH . D 3 HOH A 47 1147 159 HOH HOH . D 3 HOH A 48 1148 2 HOH HOH . D 3 HOH A 49 1149 228 HOH HOH . D 3 HOH A 50 1150 84 HOH HOH . D 3 HOH A 51 1151 95 HOH HOH . D 3 HOH A 52 1152 146 HOH HOH . D 3 HOH A 53 1153 122 HOH HOH . D 3 HOH A 54 1154 209 HOH HOH . D 3 HOH A 55 1155 222 HOH HOH . D 3 HOH A 56 1156 78 HOH HOH . D 3 HOH A 57 1157 52 HOH HOH . D 3 HOH A 58 1158 157 HOH HOH . D 3 HOH A 59 1159 116 HOH HOH . D 3 HOH A 60 1160 3 HOH HOH . D 3 HOH A 61 1161 16 HOH HOH . D 3 HOH A 62 1162 82 HOH HOH . D 3 HOH A 63 1163 111 HOH HOH . D 3 HOH A 64 1164 79 HOH HOH . D 3 HOH A 65 1165 145 HOH HOH . D 3 HOH A 66 1166 28 HOH HOH . D 3 HOH A 67 1167 26 HOH HOH . D 3 HOH A 68 1168 135 HOH HOH . D 3 HOH A 69 1169 150 HOH HOH . D 3 HOH A 70 1170 85 HOH HOH . D 3 HOH A 71 1171 138 HOH HOH . D 3 HOH A 72 1172 232 HOH HOH . D 3 HOH A 73 1173 46 HOH HOH . D 3 HOH A 74 1174 101 HOH HOH . D 3 HOH A 75 1175 102 HOH HOH . D 3 HOH A 76 1176 130 HOH HOH . D 3 HOH A 77 1177 128 HOH HOH . D 3 HOH A 78 1178 153 HOH HOH . D 3 HOH A 79 1179 109 HOH HOH . D 3 HOH A 80 1180 98 HOH HOH . D 3 HOH A 81 1181 215 HOH HOH . D 3 HOH A 82 1182 69 HOH HOH . D 3 HOH A 83 1183 129 HOH HOH . D 3 HOH A 84 1184 89 HOH HOH . D 3 HOH A 85 1185 97 HOH HOH . D 3 HOH A 86 1186 24 HOH HOH . D 3 HOH A 87 1187 136 HOH HOH . D 3 HOH A 88 1188 91 HOH HOH . D 3 HOH A 89 1189 132 HOH HOH . D 3 HOH A 90 1190 115 HOH HOH . D 3 HOH A 91 1191 77 HOH HOH . D 3 HOH A 92 1192 66 HOH HOH . D 3 HOH A 93 1193 4 HOH HOH . D 3 HOH A 94 1194 45 HOH HOH . D 3 HOH A 95 1195 70 HOH HOH . D 3 HOH A 96 1196 67 HOH HOH . D 3 HOH A 97 1197 14 HOH HOH . D 3 HOH A 98 1198 88 HOH HOH . D 3 HOH A 99 1199 154 HOH HOH . D 3 HOH A 100 1200 90 HOH HOH . D 3 HOH A 101 1201 195 HOH HOH . D 3 HOH A 102 1202 17 HOH HOH . D 3 HOH A 103 1203 8 HOH HOH . D 3 HOH A 104 1204 190 HOH HOH . D 3 HOH A 105 1205 20 HOH HOH . D 3 HOH A 106 1206 23 HOH HOH . D 3 HOH A 107 1207 134 HOH HOH . D 3 HOH A 108 1208 44 HOH HOH . D 3 HOH A 109 1209 13 HOH HOH . D 3 HOH A 110 1210 99 HOH HOH . D 3 HOH A 111 1211 239 HOH HOH . D 3 HOH A 112 1212 9 HOH HOH . D 3 HOH A 113 1213 231 HOH HOH . D 3 HOH A 114 1214 127 HOH HOH . D 3 HOH A 115 1215 58 HOH HOH . D 3 HOH A 116 1216 1 HOH HOH . D 3 HOH A 117 1217 137 HOH HOH . D 3 HOH A 118 1218 25 HOH HOH . D 3 HOH A 119 1219 110 HOH HOH . D 3 HOH A 120 1220 112 HOH HOH . D 3 HOH A 121 1221 166 HOH HOH . D 3 HOH A 122 1222 221 HOH HOH . D 3 HOH A 123 1223 22 HOH HOH . D 3 HOH A 124 1224 60 HOH HOH . D 3 HOH A 125 1225 162 HOH HOH . D 3 HOH A 126 1226 5 HOH HOH . D 3 HOH A 127 1227 206 HOH HOH . D 3 HOH A 128 1228 18 HOH HOH . D 3 HOH A 129 1229 19 HOH HOH . D 3 HOH A 130 1230 147 HOH HOH . D 3 HOH A 131 1231 108 HOH HOH . D 3 HOH A 132 1232 39 HOH HOH . D 3 HOH A 133 1233 167 HOH HOH . D 3 HOH A 134 1234 133 HOH HOH . D 3 HOH A 135 1235 48 HOH HOH . D 3 HOH A 136 1236 212 HOH HOH . D 3 HOH A 137 1237 33 HOH HOH . D 3 HOH A 138 1238 163 HOH HOH . D 3 HOH A 139 1239 165 HOH HOH . D 3 HOH A 140 1240 148 HOH HOH . D 3 HOH A 141 1241 51 HOH HOH . D 3 HOH A 142 1242 113 HOH HOH . D 3 HOH A 143 1243 64 HOH HOH . D 3 HOH A 144 1244 236 HOH HOH . D 3 HOH A 145 1245 131 HOH HOH . D 3 HOH A 146 1246 47 HOH HOH . D 3 HOH A 147 1247 27 HOH HOH . D 3 HOH A 148 1248 208 HOH HOH . D 3 HOH A 149 1249 197 HOH HOH . D 3 HOH A 150 1250 81 HOH HOH . D 3 HOH A 151 1251 161 HOH HOH . D 3 HOH A 152 1252 171 HOH HOH . D 3 HOH A 153 1253 36 HOH HOH . D 3 HOH A 154 1254 61 HOH HOH . D 3 HOH A 155 1255 152 HOH HOH . D 3 HOH A 156 1256 43 HOH HOH . D 3 HOH A 157 1257 217 HOH HOH . D 3 HOH A 158 1258 29 HOH HOH . D 3 HOH A 159 1259 34 HOH HOH . D 3 HOH A 160 1260 125 HOH HOH . D 3 HOH A 161 1261 41 HOH HOH . D 3 HOH A 162 1262 234 HOH HOH . D 3 HOH A 163 1263 218 HOH HOH . D 3 HOH A 164 1264 31 HOH HOH . D 3 HOH A 165 1265 56 HOH HOH . D 3 HOH A 166 1266 176 HOH HOH . D 3 HOH A 167 1267 151 HOH HOH . D 3 HOH A 168 1268 140 HOH HOH . D 3 HOH A 169 1269 178 HOH HOH . D 3 HOH A 170 1270 149 HOH HOH . D 3 HOH A 171 1271 226 HOH HOH . D 3 HOH A 172 1272 54 HOH HOH . D 3 HOH A 173 1273 174 HOH HOH . D 3 HOH A 174 1274 182 HOH HOH . D 3 HOH A 175 1275 235 HOH HOH . D 3 HOH A 176 1276 175 HOH HOH . D 3 HOH A 177 1277 181 HOH HOH . D 3 HOH A 178 1278 237 HOH HOH . D 3 HOH A 179 1279 106 HOH HOH . D 3 HOH A 180 1280 179 HOH HOH . D 3 HOH A 181 1281 219 HOH HOH . D 3 HOH A 182 1282 94 HOH HOH . D 3 HOH A 183 1283 180 HOH HOH . D 3 HOH A 184 1284 124 HOH HOH . D 3 HOH A 185 1285 240 HOH HOH . D 3 HOH A 186 1286 177 HOH HOH . D 3 HOH A 187 1287 169 HOH HOH . D 3 HOH A 188 1288 40 HOH HOH . D 3 HOH A 189 1289 144 HOH HOH . D 3 HOH A 190 1290 139 HOH HOH . D 3 HOH A 191 1291 238 HOH HOH . D 3 HOH A 192 1292 170 HOH HOH . D 3 HOH A 193 1293 216 HOH HOH . D 3 HOH A 194 1294 223 HOH HOH . D 3 HOH A 195 1295 220 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -2.135 _atom_site.Cartn_y -30.472 _atom_site.Cartn_z 5.408 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.41 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #