data_7AKF
#
_model_server_result.job_id            y5i9NJBCgFSHt6ZtboOh4g 
_model_server_result.datetime_utc      '2024-10-19 17:34:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7akf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    7AKF 
#
_exptl.entry_id    7AKF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              253.299 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(2,3-dimethyl-1-benzofuran-5-yl)pyridine-2,6-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AKF 
_cell.length_a            84.408 
_cell.length_b            84.408 
_cell.length_c            148.562 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AKF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 108 A GLY 231 1_555 A N SEP 109 A SEP 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale2 A C SEP 109 A SEP 232 1_555 A N PHE 110 A PHE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale3 A C THR 258 A THR 381 1_555 A N PTR 259 A PTR 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 A C PTR 259 A PTR 382 1_555 A N ILE 260 A ILE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale5 A C SER 334 A SER 457 1_555 A N SEP 335 A SEP 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C SEP 335 A SEP 458 1_555 A N LYS 336 A LYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
#
_chem_comp.formula           'C15 H15 N3 O' 
_chem_comp.formula_weight    253.299 
_chem_comp.id                RK5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(2,3-dimethyl-1-benzofuran-5-yl)pyridine-2,6-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C13 RK5 sing 306 n n 
C13 N2 RK5 doub 307 n y 
C13 C12 RK5 sing 308 n y 
N2 C14 RK5 sing 309 n y 
C12 C11 RK5 doub 310 n y 
C4 C3 RK5 sing 311 n n 
C14 N3 RK5 sing 312 n n 
C14 C15 RK5 doub 313 n y 
C11 C15 RK5 sing 314 n y 
C11 C7 RK5 sing 315 n n 
C6 C7 RK5 doub 316 n y 
C6 C5 RK5 sing 317 n y 
C7 C8 RK5 sing 318 n y 
C3 C5 RK5 sing 319 n y 
C3 C2 RK5 doub 320 n y 
C5 C10 RK5 doub 321 n y 
C2 C1 RK5 sing 322 n n 
C2 O1 RK5 sing 323 n y 
C8 C9 RK5 doub 324 n y 
C10 O1 RK5 sing 325 n y 
C10 C9 RK5 sing 326 n y 
C1 H1 RK5 sing 327 n n 
C1 H2 RK5 sing 328 n n 
C1 H3 RK5 sing 329 n n 
C4 H4 RK5 sing 330 n n 
C4 H5 RK5 sing 331 n n 
C4 H6 RK5 sing 332 n n 
C6 H7 RK5 sing 333 n n 
C8 H8 RK5 sing 334 n n 
C9 H9 RK5 sing 335 n n 
C12 H10 RK5 sing 336 n n 
N1 H11 RK5 sing 337 n n 
N1 H12 RK5 sing 338 n n 
N3 H13 RK5 sing 339 n n 
N3 H14 RK5 sing 340 n n 
C15 H15 RK5 sing 341 n n 
#
_atom_sites.entry_id                     7AKF 
_atom_sites.fract_transf_matrix[1][1]    0.011847 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011847 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RK5 A 1 601 1536 RK5 UNL . 
C 3 CL A 1 602 1537 CL CL . 
D 4 HOH A 1 701 2016 HOH HOH . 
D 4 HOH A 2 702 2075 HOH HOH . 
D 4 HOH A 3 703 2015 HOH HOH . 
D 4 HOH A 4 704 2084 HOH HOH . 
D 4 HOH A 5 705 2056 HOH HOH . 
D 4 HOH A 6 706 2006 HOH HOH . 
D 4 HOH A 7 707 2010 HOH HOH . 
D 4 HOH A 8 708 2002 HOH HOH . 
D 4 HOH A 9 709 2003 HOH HOH . 
D 4 HOH A 10 710 2017 HOH HOH . 
D 4 HOH A 11 711 2041 HOH HOH . 
D 4 HOH A 12 712 2004 HOH HOH . 
D 4 HOH A 13 713 2012 HOH HOH . 
D 4 HOH A 14 714 2064 HOH HOH . 
D 4 HOH A 15 715 2065 HOH HOH . 
D 4 HOH A 16 716 2076 HOH HOH . 
D 4 HOH A 17 717 2037 HOH HOH . 
D 4 HOH A 18 718 2088 HOH HOH . 
D 4 HOH A 19 719 2069 HOH HOH . 
D 4 HOH A 20 720 2050 HOH HOH . 
D 4 HOH A 21 721 2040 HOH HOH . 
D 4 HOH A 22 722 2087 HOH HOH . 
D 4 HOH A 23 723 2009 HOH HOH . 
D 4 HOH A 24 724 2027 HOH HOH . 
D 4 HOH A 25 725 2079 HOH HOH . 
D 4 HOH A 26 726 2080 HOH HOH . 
D 4 HOH A 27 727 2034 HOH HOH . 
D 4 HOH A 28 728 2072 HOH HOH . 
D 4 HOH A 29 729 2020 HOH HOH . 
D 4 HOH A 30 730 2060 HOH HOH . 
D 4 HOH A 31 731 2054 HOH HOH . 
D 4 HOH A 32 732 2029 HOH HOH . 
D 4 HOH A 33 733 2013 HOH HOH . 
D 4 HOH A 34 734 2018 HOH HOH . 
D 4 HOH A 35 735 2083 HOH HOH . 
D 4 HOH A 36 736 2032 HOH HOH . 
D 4 HOH A 37 737 2066 HOH HOH . 
D 4 HOH A 38 738 2049 HOH HOH . 
D 4 HOH A 39 739 2038 HOH HOH . 
D 4 HOH A 40 740 2031 HOH HOH . 
D 4 HOH A 41 741 2033 HOH HOH . 
D 4 HOH A 42 742 2055 HOH HOH . 
D 4 HOH A 43 743 2058 HOH HOH . 
D 4 HOH A 44 744 2082 HOH HOH . 
D 4 HOH A 45 745 2014 HOH HOH . 
D 4 HOH A 46 746 2030 HOH HOH . 
D 4 HOH A 47 747 2025 HOH HOH . 
D 4 HOH A 48 748 2063 HOH HOH . 
D 4 HOH A 49 749 2028 HOH HOH . 
D 4 HOH A 50 750 2044 HOH HOH . 
D 4 HOH A 51 751 2074 HOH HOH . 
D 4 HOH A 52 752 2023 HOH HOH . 
D 4 HOH A 53 753 2077 HOH HOH . 
D 4 HOH A 54 754 2007 HOH HOH . 
D 4 HOH A 55 755 2086 HOH HOH . 
D 4 HOH A 56 756 2042 HOH HOH . 
D 4 HOH A 57 757 2005 HOH HOH . 
D 4 HOH A 58 758 2001 HOH HOH . 
D 4 HOH A 59 759 2048 HOH HOH . 
D 4 HOH A 60 760 2024 HOH HOH . 
D 4 HOH A 61 761 2019 HOH HOH . 
D 4 HOH A 62 762 2052 HOH HOH . 
D 4 HOH A 63 763 2059 HOH HOH . 
D 4 HOH A 64 764 2011 HOH HOH . 
D 4 HOH A 65 765 2039 HOH HOH . 
D 4 HOH A 66 766 2035 HOH HOH . 
D 4 HOH A 67 767 2043 HOH HOH . 
D 4 HOH A 68 768 2073 HOH HOH . 
D 4 HOH A 69 769 2026 HOH HOH . 
D 4 HOH A 70 770 2047 HOH HOH . 
D 4 HOH A 71 771 2051 HOH HOH . 
D 4 HOH A 72 772 2071 HOH HOH . 
D 4 HOH A 73 773 2057 HOH HOH . 
D 4 HOH A 74 774 2046 HOH HOH . 
D 4 HOH A 75 775 2021 HOH HOH . 
D 4 HOH A 76 776 2081 HOH HOH . 
D 4 HOH A 77 777 2085 HOH HOH . 
D 4 HOH A 78 778 2078 HOH HOH . 
D 4 HOH A 79 779 2045 HOH HOH . 
D 4 HOH A 80 780 2053 HOH HOH . 
D 4 HOH A 81 781 2068 HOH HOH . 
D 4 HOH A 82 782 2067 HOH HOH . 
D 4 HOH A 83 783 2022 HOH HOH . 
D 4 HOH A 84 784 2062 HOH HOH . 
D 4 HOH A 85 785 2008 HOH HOH . 
D 4 HOH A 86 786 2070 HOH HOH . 
D 4 HOH A 87 787 2061 HOH HOH . 
D 4 HOH A 88 788 2036 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RK5 . . . B 2 32.851 19.533 23.933 1 29.94 ? C1 RK5 601 A 1 
HETATM 2 C C2 RK5 . . . B 2 32.886 20.964 23.53 1 33.35 ? C2 RK5 601 A 1 
HETATM 3 C C3 RK5 . . . B 2 32.85 21.552 22.303 1 31.5 ? C3 RK5 601 A 1 
HETATM 4 C C4 RK5 . . . B 2 32.771 20.894 20.957 1 32.45 ? C4 RK5 601 A 1 
HETATM 5 C C5 RK5 . . . B 2 32.885 22.968 22.536 1 28.55 ? C5 RK5 601 A 1 
HETATM 6 C C6 RK5 . . . B 2 32.871 24.084 21.72 1 28.64 ? C6 RK5 601 A 1 
HETATM 7 C C7 RK5 . . . B 2 32.96 25.347 22.301 1 29.49 ? C7 RK5 601 A 1 
HETATM 8 C C8 RK5 . . . B 2 33.009 25.45 23.712 1 28.89 ? C8 RK5 601 A 1 
HETATM 9 C C9 RK5 . . . B 2 32.999 24.352 24.538 1 27.11 ? C9 RK5 601 A 1 
HETATM 10 C C10 RK5 . . . B 2 32.943 23.137 23.908 1 27.56 ? C10 RK5 601 A 1 
HETATM 11 O O1 RK5 . . . B 2 32.94 21.913 24.532 1 34.85 ? O1 RK5 601 A 1 
HETATM 12 C C11 RK5 . . . B 2 32.86 26.558 21.441 1 28.39 ? C11 RK5 601 A 1 
HETATM 13 C C12 RK5 . . . B 2 32.851 26.42 20.058 1 28.27 ? C12 RK5 601 A 1 
HETATM 14 C C13 RK5 . . . B 2 32.69 27.534 19.227 1 27.73 ? C13 RK5 601 A 1 
HETATM 15 N N1 RK5 . . . B 2 32.735 27.363 17.903 1 29.92 ? N1 RK5 601 A 1 
HETATM 16 N N2 RK5 . . . B 2 32.533 28.778 19.726 1 26.89 ? N2 RK5 601 A 1 
HETATM 17 C C14 RK5 . . . B 2 32.45 28.907 21.07 1 31.3 ? C14 RK5 601 A 1 
HETATM 18 N N3 RK5 . . . B 2 32.241 30.115 21.553 1 34.42 ? N3 RK5 601 A 1 
HETATM 19 C C15 RK5 . . . B 2 32.584 27.82 21.957 1 29.33 ? C15 RK5 601 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           19 
#