data_7AKG # _model_server_result.job_id Q5swCSaiEXQKGHo4LvTRng _model_server_result.datetime_utc '2024-11-24 17:56:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7akg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 7AKG # _exptl.entry_id 7AKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.429 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AKG _cell.length_a 84.289 _cell.length_b 84.289 _cell.length_c 114.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H21 F N6 O' _chem_comp.formula_weight 392.429 _chem_comp.id 38O _chem_comp.mon_nstd_flag . _chem_comp.name 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dovitinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 38O sing 1 n n C4 N5 38O sing 2 n n C3 N2 38O sing 3 n n F22 C21 38O sing 4 n n N2 C1 38O sing 5 n n N2 C7 38O sing 6 n n N5 C6 38O sing 7 n n N5 C8 38O sing 8 n n N19 C18 38O sing 9 n n C6 C7 38O sing 10 n n C9 C8 38O doub 11 n y C9 C10 38O sing 12 n y C8 C16 38O sing 13 n y C21 C23 38O doub 14 n y C21 C20 38O sing 15 n y N11 C10 38O sing 16 n y N11 C12 38O doub 17 n y C10 C14 38O doub 18 n y C23 C24 38O sing 19 n y C18 C20 38O sing 20 n n C18 C17 38O doub 21 n n C16 C15 38O doub 22 n y C20 C26 38O doub 23 n y C12 C17 38O sing 24 n n C12 N13 38O sing 25 n y C14 C15 38O sing 26 n y C14 N13 38O sing 27 n y C17 C28 38O sing 28 n n C24 C25 38O doub 29 n y C26 C25 38O sing 30 n y C26 N27 38O sing 31 n n C28 N27 38O sing 32 n n C28 O29 38O doub 33 n n C1 H1 38O sing 34 n n C1 H2 38O sing 35 n n C1 H3 38O sing 36 n n C3 H4 38O sing 37 n n C3 H5 38O sing 38 n n C4 H6 38O sing 39 n n C4 H7 38O sing 40 n n C6 H8 38O sing 41 n n C6 H9 38O sing 42 n n C7 H10 38O sing 43 n n C7 H11 38O sing 44 n n N13 H12 38O sing 45 n n C15 H13 38O sing 46 n n C16 H14 38O sing 47 n n C23 H15 38O sing 48 n n C24 H16 38O sing 49 n n C9 H18 38O sing 50 n n N19 H20 38O sing 51 n n N19 H21 38O sing 52 n n C25 H22 38O sing 53 n n N27 H23 38O sing 54 n n # _atom_sites.entry_id 7AKG _atom_sites.fract_transf_matrix[1][1] 0.011864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 2 EDO EDO . C 2 EDO A 1 402 3 EDO EDO . D 2 EDO A 1 403 4 EDO EDO . E 2 EDO A 1 404 5 EDO EDO . F 2 EDO A 1 405 6 EDO EDO . G 3 38O A 1 406 1 38O ZZZ . H 4 HOH A 1 501 185 HOH HOH . H 4 HOH A 2 502 188 HOH HOH . H 4 HOH A 3 503 170 HOH HOH . H 4 HOH A 4 504 201 HOH HOH . H 4 HOH A 5 505 163 HOH HOH . H 4 HOH A 6 506 204 HOH HOH . H 4 HOH A 7 507 110 HOH HOH . H 4 HOH A 8 508 79 HOH HOH . H 4 HOH A 9 509 12 HOH HOH . H 4 HOH A 10 510 141 HOH HOH . H 4 HOH A 11 511 122 HOH HOH . H 4 HOH A 12 512 22 HOH HOH . H 4 HOH A 13 513 38 HOH HOH . H 4 HOH A 14 514 20 HOH HOH . H 4 HOH A 15 515 83 HOH HOH . H 4 HOH A 16 516 142 HOH HOH . H 4 HOH A 17 517 128 HOH HOH . H 4 HOH A 18 518 71 HOH HOH . H 4 HOH A 19 519 181 HOH HOH . H 4 HOH A 20 520 36 HOH HOH . H 4 HOH A 21 521 15 HOH HOH . H 4 HOH A 22 522 18 HOH HOH . H 4 HOH A 23 523 14 HOH HOH . H 4 HOH A 24 524 78 HOH HOH . H 4 HOH A 25 525 69 HOH HOH . H 4 HOH A 26 526 68 HOH HOH . H 4 HOH A 27 527 195 HOH HOH . H 4 HOH A 28 528 179 HOH HOH . H 4 HOH A 29 529 76 HOH HOH . H 4 HOH A 30 530 56 HOH HOH . H 4 HOH A 31 531 162 HOH HOH . H 4 HOH A 32 532 4 HOH HOH . H 4 HOH A 33 533 31 HOH HOH . H 4 HOH A 34 534 24 HOH HOH . H 4 HOH A 35 535 60 HOH HOH . H 4 HOH A 36 536 189 HOH HOH . H 4 HOH A 37 537 93 HOH HOH . H 4 HOH A 38 538 178 HOH HOH . H 4 HOH A 39 539 133 HOH HOH . H 4 HOH A 40 540 111 HOH HOH . H 4 HOH A 41 541 30 HOH HOH . H 4 HOH A 42 542 57 HOH HOH . H 4 HOH A 43 543 105 HOH HOH . H 4 HOH A 44 544 126 HOH HOH . H 4 HOH A 45 545 136 HOH HOH . H 4 HOH A 46 546 145 HOH HOH . H 4 HOH A 47 547 143 HOH HOH . H 4 HOH A 48 548 9 HOH HOH . H 4 HOH A 49 549 88 HOH HOH . H 4 HOH A 50 550 28 HOH HOH . H 4 HOH A 51 551 37 HOH HOH . H 4 HOH A 52 552 44 HOH HOH . H 4 HOH A 53 553 40 HOH HOH . H 4 HOH A 54 554 160 HOH HOH . H 4 HOH A 55 555 124 HOH HOH . H 4 HOH A 56 556 84 HOH HOH . H 4 HOH A 57 557 47 HOH HOH . H 4 HOH A 58 558 81 HOH HOH . H 4 HOH A 59 559 41 HOH HOH . H 4 HOH A 60 560 61 HOH HOH . H 4 HOH A 61 561 90 HOH HOH . H 4 HOH A 62 562 62 HOH HOH . H 4 HOH A 63 563 55 HOH HOH . H 4 HOH A 64 564 10 HOH HOH . H 4 HOH A 65 565 16 HOH HOH . H 4 HOH A 66 566 33 HOH HOH . H 4 HOH A 67 567 156 HOH HOH . H 4 HOH A 68 568 53 HOH HOH . H 4 HOH A 69 569 50 HOH HOH . H 4 HOH A 70 570 120 HOH HOH . H 4 HOH A 71 571 75 HOH HOH . H 4 HOH A 72 572 107 HOH HOH . H 4 HOH A 73 573 186 HOH HOH . H 4 HOH A 74 574 52 HOH HOH . H 4 HOH A 75 575 129 HOH HOH . H 4 HOH A 76 576 151 HOH HOH . H 4 HOH A 77 577 130 HOH HOH . H 4 HOH A 78 578 35 HOH HOH . H 4 HOH A 79 579 13 HOH HOH . H 4 HOH A 80 580 21 HOH HOH . H 4 HOH A 81 581 97 HOH HOH . H 4 HOH A 82 582 70 HOH HOH . H 4 HOH A 83 583 91 HOH HOH . H 4 HOH A 84 584 17 HOH HOH . H 4 HOH A 85 585 67 HOH HOH . H 4 HOH A 86 586 65 HOH HOH . H 4 HOH A 87 587 54 HOH HOH . H 4 HOH A 88 588 48 HOH HOH . H 4 HOH A 89 589 94 HOH HOH . H 4 HOH A 90 590 74 HOH HOH . H 4 HOH A 91 591 27 HOH HOH . H 4 HOH A 92 592 6 HOH HOH . H 4 HOH A 93 593 109 HOH HOH . H 4 HOH A 94 594 45 HOH HOH . H 4 HOH A 95 595 164 HOH HOH . H 4 HOH A 96 596 43 HOH HOH . H 4 HOH A 97 597 42 HOH HOH . H 4 HOH A 98 598 32 HOH HOH . H 4 HOH A 99 599 66 HOH HOH . H 4 HOH A 100 600 187 HOH HOH . H 4 HOH A 101 601 140 HOH HOH . H 4 HOH A 102 602 11 HOH HOH . H 4 HOH A 103 603 106 HOH HOH . H 4 HOH A 104 604 191 HOH HOH . H 4 HOH A 105 605 176 HOH HOH . H 4 HOH A 106 606 150 HOH HOH . H 4 HOH A 107 607 196 HOH HOH . H 4 HOH A 108 608 8 HOH HOH . H 4 HOH A 109 609 80 HOH HOH . H 4 HOH A 110 610 159 HOH HOH . H 4 HOH A 111 611 157 HOH HOH . H 4 HOH A 112 612 200 HOH HOH . H 4 HOH A 113 613 165 HOH HOH . H 4 HOH A 114 614 23 HOH HOH . H 4 HOH A 115 615 46 HOH HOH . H 4 HOH A 116 616 5 HOH HOH . H 4 HOH A 117 617 123 HOH HOH . H 4 HOH A 118 618 2 HOH HOH . H 4 HOH A 119 619 173 HOH HOH . H 4 HOH A 120 620 158 HOH HOH . H 4 HOH A 121 621 19 HOH HOH . H 4 HOH A 122 622 127 HOH HOH . H 4 HOH A 123 623 77 HOH HOH . H 4 HOH A 124 624 3 HOH HOH . H 4 HOH A 125 625 149 HOH HOH . H 4 HOH A 126 626 89 HOH HOH . H 4 HOH A 127 627 102 HOH HOH . H 4 HOH A 128 628 51 HOH HOH . H 4 HOH A 129 629 203 HOH HOH . H 4 HOH A 130 630 26 HOH HOH . H 4 HOH A 131 631 92 HOH HOH . H 4 HOH A 132 632 146 HOH HOH . H 4 HOH A 133 633 7 HOH HOH . H 4 HOH A 134 634 73 HOH HOH . H 4 HOH A 135 635 152 HOH HOH . H 4 HOH A 136 636 87 HOH HOH . H 4 HOH A 137 637 72 HOH HOH . H 4 HOH A 138 638 147 HOH HOH . H 4 HOH A 139 639 166 HOH HOH . H 4 HOH A 140 640 49 HOH HOH . H 4 HOH A 141 641 100 HOH HOH . H 4 HOH A 142 642 25 HOH HOH . H 4 HOH A 143 643 131 HOH HOH . H 4 HOH A 144 644 180 HOH HOH . H 4 HOH A 145 645 206 HOH HOH . H 4 HOH A 146 646 59 HOH HOH . H 4 HOH A 147 647 184 HOH HOH . H 4 HOH A 148 648 135 HOH HOH . H 4 HOH A 149 649 205 HOH HOH . H 4 HOH A 150 650 169 HOH HOH . H 4 HOH A 151 651 39 HOH HOH . H 4 HOH A 152 652 34 HOH HOH . H 4 HOH A 153 653 103 HOH HOH . H 4 HOH A 154 654 63 HOH HOH . H 4 HOH A 155 655 64 HOH HOH . H 4 HOH A 156 656 117 HOH HOH . H 4 HOH A 157 657 1 HOH HOH . H 4 HOH A 158 658 154 HOH HOH . H 4 HOH A 159 659 134 HOH HOH . H 4 HOH A 160 660 182 HOH HOH . H 4 HOH A 161 661 121 HOH HOH . H 4 HOH A 162 662 95 HOH HOH . H 4 HOH A 163 663 193 HOH HOH . H 4 HOH A 164 664 161 HOH HOH . H 4 HOH A 165 665 190 HOH HOH . H 4 HOH A 166 666 125 HOH HOH . H 4 HOH A 167 667 116 HOH HOH . H 4 HOH A 168 668 199 HOH HOH . H 4 HOH A 169 669 58 HOH HOH . H 4 HOH A 170 670 175 HOH HOH . H 4 HOH A 171 671 183 HOH HOH . H 4 HOH A 172 672 112 HOH HOH . H 4 HOH A 173 673 99 HOH HOH . H 4 HOH A 174 674 192 HOH HOH . H 4 HOH A 175 675 167 HOH HOH . H 4 HOH A 176 676 172 HOH HOH . H 4 HOH A 177 677 148 HOH HOH . H 4 HOH A 178 678 144 HOH HOH . H 4 HOH A 179 679 101 HOH HOH . H 4 HOH A 180 680 153 HOH HOH . H 4 HOH A 181 681 82 HOH HOH . H 4 HOH A 182 682 137 HOH HOH . H 4 HOH A 183 683 115 HOH HOH . H 4 HOH A 184 684 198 HOH HOH . H 4 HOH A 185 685 171 HOH HOH . H 4 HOH A 186 686 194 HOH HOH . H 4 HOH A 187 687 86 HOH HOH . H 4 HOH A 188 688 96 HOH HOH . H 4 HOH A 189 689 119 HOH HOH . H 4 HOH A 190 690 118 HOH HOH . H 4 HOH A 191 691 139 HOH HOH . H 4 HOH A 192 692 138 HOH HOH . H 4 HOH A 193 693 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 38O . . . G 3 10.362 -2.375 7.987 1 71.32 ? C1 38O 406 A 1 HETATM 2 C C3 38O . . . G 3 12.494 -2.841 6.946 1 67.97 ? C3 38O 406 A 1 HETATM 3 C C4 38O . . . G 3 13.891 -2.317 6.681 1 67.52 ? C4 38O 406 A 1 HETATM 4 C C6 38O . . . G 3 12.962 -0.062 6.513 1 67.03 ? C6 38O 406 A 1 HETATM 5 C C7 38O . . . G 3 11.582 -0.644 6.814 1 67.63 ? C7 38O 406 A 1 HETATM 6 C C8 38O . . . G 3 15.008 -0.638 5.274 1 47.93 ? C8 38O 406 A 1 HETATM 7 C C12 38O . . . G 3 19.473 0.217 4.568 1 35.52 ? C12 38O 406 A 1 HETATM 8 N N13 38O . . . G 3 18.596 0.598 3.614 1 36.44 ? N13 38O 406 A 1 HETATM 9 C C15 38O . . . G 3 16.085 0.422 3.367 1 42 ? C15 38O 406 A 1 HETATM 10 C C16 38O . . . G 3 14.944 -0.05 3.999 1 44.99 ? C16 38O 406 A 1 HETATM 11 C C17 38O . . . G 3 20.905 0.414 4.526 1 31.54 ? C17 38O 406 A 1 HETATM 12 C C18 38O . . . G 3 21.582 1.171 3.539 1 32.03 ? C18 38O 406 A 1 HETATM 13 C C21 38O . . . G 3 23.724 2.245 2.759 1 31.83 ? C21 38O 406 A 1 HETATM 14 C C23 38O . . . G 3 25.043 2.582 2.936 1 32.51 ? C23 38O 406 A 1 HETATM 15 C C24 38O . . . G 3 25.71 2.083 4.044 1 30.17 ? C24 38O 406 A 1 HETATM 16 O O29 38O . . . G 3 21.215 -0.782 6.49 1 32.99 ? O29 38O 406 A 1 HETATM 17 N N2 38O . . . G 3 11.694 -1.841 7.648 1 72.75 ? N2 38O 406 A 1 HETATM 18 N N5 38O . . . G 3 13.838 -1.074 5.903 1 61.95 ? N5 38O 406 A 1 HETATM 19 C C9 38O . . . G 3 16.258 -0.758 5.911 1 43.8 ? C9 38O 406 A 1 HETATM 20 C C10 38O . . . G 3 17.4 -0.295 5.26 1 40.03 ? C10 38O 406 A 1 HETATM 21 N N11 38O . . . G 3 18.754 -0.338 5.584 1 36.59 ? N11 38O 406 A 1 HETATM 22 C C14 38O . . . G 3 17.308 0.296 4.012 1 39.56 ? C14 38O 406 A 1 HETATM 23 N N19 38O . . . G 3 20.886 1.646 2.497 1 30.81 ? N19 38O 406 A 1 HETATM 24 C C20 38O . . . G 3 23.005 1.45 3.644 1 32.05 ? C20 38O 406 A 1 HETATM 25 F F22 38O . . . G 3 23.105 2.664 1.638 1 36.35 ? F22 38O 406 A 1 HETATM 26 C C25 38O . . . G 3 25.057 1.253 4.942 1 31.88 ? C25 38O 406 A 1 HETATM 27 C C26 38O . . . G 3 23.702 0.939 4.757 1 30 ? C26 38O 406 A 1 HETATM 28 N N27 38O . . . G 3 23.065 0.171 5.697 1 32.35 ? N27 38O 406 A 1 HETATM 29 C C28 38O . . . G 3 21.709 -0.098 5.601 1 30.86 ? C28 38O 406 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #