data_7AKH # _model_server_result.job_id Gb5OJ20zh7I11cNcxun3HA _model_server_result.datetime_utc '2025-01-26 02:33:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7akh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7AKH # _exptl.entry_id 7AKH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[3-[(2~{S})-2-(6-bromanylpyridin-2-yl)oxypropyl]-2-methyl-imidazo[4,5-b]pyridin-5-yl]pyridine-2,6-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AKH _cell.length_a 84.24 _cell.length_b 84.24 _cell.length_c 150.06 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 108 A GLY 231 1_555 A N SEP 109 A SEP 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 109 A SEP 232 1_555 A N PHE 110 A PHE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 A C THR 258 A THR 381 1_555 A N PTR 259 A PTR 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A C PTR 259 A PTR 382 1_555 A N ILE 260 A ILE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 A C SER 334 A SER 457 1_555 A N SEP 335 A SEP 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 A C SEP 335 A SEP 458 1_555 A N LYS 336 A LYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C20 H20 Br N7 O' _chem_comp.formula_weight 454.323 _chem_comp.id RK8 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[3-[(2~{S})-2-(6-bromanylpyridin-2-yl)oxypropyl]-2-methyl-imidazo[4,5-b]pyridin-5-yl]pyridine-2,6-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR1 C20 RK8 sing 306 n n N4 C13 RK8 sing 307 n n N5 C13 RK8 doub 308 n y N5 C14 RK8 sing 309 n y C13 C12 RK8 sing 310 n y N6 C14 RK8 sing 311 n n C19 C20 RK8 doub 312 n y C19 C18 RK8 sing 313 n y C20 N7 RK8 sing 314 n y C14 C15 RK8 doub 315 n y C12 C11 RK8 doub 316 n y C18 C17 RK8 doub 317 n y N7 C16 RK8 doub 318 n y C15 C11 RK8 sing 319 n y C11 C9 RK8 sing 320 n n C16 C17 RK8 sing 321 n y C16 O1 RK8 sing 322 n n C9 N3 RK8 doub 323 n y C9 C8 RK8 sing 324 n y N3 C10 RK8 sing 325 n y O1 C2 RK8 sing 326 n n C8 C7 RK8 doub 327 n y C3 C2 RK8 sing 328 n n C3 N1 RK8 sing 329 n n C10 N1 RK8 sing 330 n y C10 C6 RK8 doub 331 n y C2 C1 RK8 sing 332 n n N1 C4 RK8 sing 333 n y C7 C6 RK8 sing 334 n y C6 N2 RK8 sing 335 n y C4 N2 RK8 doub 336 n y C4 C5 RK8 sing 337 n n C1 H1 RK8 sing 338 n n C1 H2 RK8 sing 339 n n C1 H3 RK8 sing 340 n n C2 H4 RK8 sing 341 n n C3 H5 RK8 sing 342 n n C3 H6 RK8 sing 343 n n N4 H7 RK8 sing 344 n n N4 H8 RK8 sing 345 n n C5 H9 RK8 sing 346 n n C5 H10 RK8 sing 347 n n C5 H11 RK8 sing 348 n n N6 H12 RK8 sing 349 n n N6 H13 RK8 sing 350 n n C7 H14 RK8 sing 351 n n C8 H15 RK8 sing 352 n n C12 H16 RK8 sing 353 n n C15 H17 RK8 sing 354 n n C17 H18 RK8 sing 355 n n C18 H19 RK8 sing 356 n n C19 H20 RK8 sing 357 n n # _atom_sites.entry_id 7AKH _atom_sites.fract_transf_matrix[1][1] 0.011871 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RK8 A 1 601 1536 RK8 UNL . C 3 CL A 1 602 1537 CL CL . D 4 HOH A 1 701 2005 HOH HOH . D 4 HOH A 2 702 2009 HOH HOH . D 4 HOH A 3 703 2020 HOH HOH . D 4 HOH A 4 704 2004 HOH HOH . D 4 HOH A 5 705 2013 HOH HOH . D 4 HOH A 6 706 2001 HOH HOH . D 4 HOH A 7 707 2012 HOH HOH . D 4 HOH A 8 708 2017 HOH HOH . D 4 HOH A 9 709 2002 HOH HOH . D 4 HOH A 10 710 2007 HOH HOH . D 4 HOH A 11 711 2021 HOH HOH . D 4 HOH A 12 712 2019 HOH HOH . D 4 HOH A 13 713 2015 HOH HOH . D 4 HOH A 14 714 2008 HOH HOH . D 4 HOH A 15 715 2016 HOH HOH . D 4 HOH A 16 716 2011 HOH HOH . D 4 HOH A 17 717 2003 HOH HOH . D 4 HOH A 18 718 2010 HOH HOH . D 4 HOH A 19 719 2014 HOH HOH . D 4 HOH A 20 720 2006 HOH HOH . D 4 HOH A 21 721 2018 HOH HOH . D 4 HOH A 22 722 2022 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RK8 . . . B 2 33.835 19.204 21.235 1 109.17 ? C1 RK8 601 A 1 HETATM 2 N N1 RK8 . . . B 2 32.696 21.494 22.664 1 76.44 ? N1 RK8 601 A 1 HETATM 3 O O1 RK8 . . . B 2 33.387 21.162 19.81 1 106.23 ? O1 RK8 601 A 1 HETATM 4 C C2 RK8 . . . B 2 32.801 20.117 20.621 1 101.77 ? C2 RK8 601 A 1 HETATM 5 N N2 RK8 . . . B 2 33.468 21.711 24.741 1 66.61 ? N2 RK8 601 A 1 HETATM 6 C C3 RK8 . . . B 2 31.943 20.926 21.547 1 89.88 ? C3 RK8 601 A 1 HETATM 7 N N3 RK8 . . . B 2 32.854 23.832 21.965 1 56.52 ? N3 RK8 601 A 1 HETATM 8 C C4 RK8 . . . B 2 32.964 20.876 23.863 1 63.96 ? C4 RK8 601 A 1 HETATM 9 N N4 RK8 . . . B 2 33.186 27.056 17.946 1 54.64 ? N4 RK8 601 A 1 HETATM 10 C C5 RK8 . . . B 2 32.755 19.436 24.126 1 62.17 ? C5 RK8 601 A 1 HETATM 11 N N5 RK8 . . . B 2 32.912 28.411 19.742 1 46.6 ? N5 RK8 601 A 1 HETATM 12 C C6 RK8 . . . B 2 33.462 22.952 24.121 1 63.71 ? C6 RK8 601 A 1 HETATM 13 N N6 RK8 . . . B 2 32.573 29.84 21.517 1 43.58 ? N6 RK8 601 A 1 HETATM 14 C C7 RK8 . . . B 2 33.885 24.191 24.558 1 56.64 ? C7 RK8 601 A 1 HETATM 15 N N7 RK8 . . . B 2 33.425 22.039 17.8 1 128.84 ? N7 RK8 601 A 1 HETATM 16 C C8 RK8 . . . B 2 33.763 25.24 23.696 1 57.52 ? C8 RK8 601 A 1 HETATM 17 C C9 RK8 . . . B 2 33.244 25.054 22.398 1 55.32 ? C9 RK8 601 A 1 HETATM 18 C C10 RK8 . . . B 2 32.975 22.83 22.827 1 67.02 ? C10 RK8 601 A 1 HETATM 19 C C11 RK8 . . . B 2 33.114 26.206 21.468 1 54.6 ? C11 RK8 601 A 1 HETATM 20 C C12 RK8 . . . B 2 33.221 26.045 20.091 1 47.74 ? C12 RK8 601 A 1 HETATM 21 C C13 RK8 . . . B 2 33.089 27.17 19.26 1 47.16 ? C13 RK8 601 A 1 HETATM 22 C C14 RK8 . . . B 2 32.81 28.583 21.071 1 47.27 ? C14 RK8 601 A 1 HETATM 23 C C15 RK8 . . . B 2 32.909 27.494 21.961 1 49.78 ? C15 RK8 601 A 1 HETATM 24 C C16 RK8 . . . B 2 32.646 21.684 18.807 1 131.72 ? C16 RK8 601 A 1 HETATM 25 C C17 RK8 . . . B 2 31.252 21.88 18.769 1 133.9 ? C17 RK8 601 A 1 HETATM 26 C C18 RK8 . . . B 2 30.702 22.461 17.656 1 113.83 ? C18 RK8 601 A 1 HETATM 27 C C19 RK8 . . . B 2 31.519 22.843 16.607 1 131.2 ? C19 RK8 601 A 1 HETATM 28 C C20 RK8 . . . B 2 32.875 22.602 16.746 1 131 ? C20 RK8 601 A 1 HETATM 29 BR BR1 RK8 . . . B 2 34.128 23.08 15.389 0.75 137.45 ? BR1 RK8 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #