data_7AKN # _model_server_result.job_id mwW2-QBtcNlXA1O6yPHUXw _model_server_result.datetime_utc '2024-11-05 22:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7akn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 7AKN # _exptl.entry_id 7AKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.146 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description VALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AKN _cell.length_a 92.408 _cell.length_b 92.408 _cell.length_c 129.33 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc4 A O GLN 61 A GLN 61 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc5 A OD2 ASP 138 A ASP 138 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc6 A NE2 HIS 142 A HIS 142 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc7 A NE2 HIS 146 A HIS 146 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc8 A OE2 GLU 166 A GLU 166 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc9 A OE1 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc10 A OE2 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc11 A O ASN 183 A ASN 183 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc12 A OD1 ASP 185 A ASP 185 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc13 A O GLU 187 A GLU 187 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc14 A OE1 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc15 A OE2 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc16 A OE2 GLU 190 A GLU 190 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc17 A O TYR 193 A TYR 193 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc18 A O THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc19 A OG1 THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc20 A O ILE 197 A ILE 197 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc21 A OD1 ASP 200 A ASP 200 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc22 B CA CA . A CA 401 1_555 I O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc23 D CA CA . A CA 403 1_555 I O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc24 D CA CA . A CA 403 1_555 I O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc25 D CA CA . A CA 403 1_555 I O HOH . A HOH 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc26 E CA CA . A CA 404 1_555 I O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc27 E CA CA . A CA 404 1_555 I O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc28 F ZN ZN . A ZN 405 1_555 I O HOH . A HOH 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id VAL _chem_comp.mon_nstd_flag y _chem_comp.name VALINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA VAL sing 345 n n N H VAL sing 346 n n N H2 VAL sing 347 n n CA C VAL sing 348 n n CA CB VAL sing 349 n n CA HA VAL sing 350 n n C O VAL doub 351 n n C OXT VAL sing 352 n n CB CG1 VAL sing 353 n n CB CG2 VAL sing 354 n n CB HB VAL sing 355 n n CG1 HG11 VAL sing 356 n n CG1 HG12 VAL sing 357 n n CG1 HG13 VAL sing 358 n n CG2 HG21 VAL sing 359 n n CG2 HG22 VAL sing 360 n n CG2 HG23 VAL sing 361 n n OXT HXT VAL sing 362 n n # _atom_sites.entry_id 7AKN _atom_sites.fract_transf_matrix[1][1] 0.010822 _atom_sites.fract_transf_matrix[1][2] 0.006248 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 2 CA A 1 403 403 CA CA . E 2 CA A 1 404 404 CA CA . F 3 ZN A 1 405 405 ZN ZN . G 4 VAL A 1 406 1001 VAL VAL . H 5 LYS A 1 407 1002 LYS LYS . I 6 HOH A 1 501 58 HOH HOH . I 6 HOH A 2 502 46 HOH HOH . I 6 HOH A 3 503 70 HOH HOH . I 6 HOH A 4 504 104 HOH HOH . I 6 HOH A 5 505 2 HOH HOH . I 6 HOH A 6 506 34 HOH HOH . I 6 HOH A 7 507 15 HOH HOH . I 6 HOH A 8 508 61 HOH HOH . I 6 HOH A 9 509 59 HOH HOH . I 6 HOH A 10 510 33 HOH HOH . I 6 HOH A 11 511 5 HOH HOH . I 6 HOH A 12 512 20 HOH HOH . I 6 HOH A 13 513 3 HOH HOH . I 6 HOH A 14 514 90 HOH HOH . I 6 HOH A 15 515 72 HOH HOH . I 6 HOH A 16 516 84 HOH HOH . I 6 HOH A 17 517 6 HOH HOH . I 6 HOH A 18 518 19 HOH HOH . I 6 HOH A 19 519 67 HOH HOH . I 6 HOH A 20 520 64 HOH HOH . I 6 HOH A 21 521 35 HOH HOH . I 6 HOH A 22 522 62 HOH HOH . I 6 HOH A 23 523 28 HOH HOH . I 6 HOH A 24 524 11 HOH HOH . I 6 HOH A 25 525 53 HOH HOH . I 6 HOH A 26 526 140 HOH HOH . I 6 HOH A 27 527 38 HOH HOH . I 6 HOH A 28 528 131 HOH HOH . I 6 HOH A 29 529 80 HOH HOH . I 6 HOH A 30 530 79 HOH HOH . I 6 HOH A 31 531 101 HOH HOH . I 6 HOH A 32 532 42 HOH HOH . I 6 HOH A 33 533 92 HOH HOH . I 6 HOH A 34 534 18 HOH HOH . I 6 HOH A 35 535 40 HOH HOH . I 6 HOH A 36 536 74 HOH HOH . I 6 HOH A 37 537 123 HOH HOH . I 6 HOH A 38 538 129 HOH HOH . I 6 HOH A 39 539 82 HOH HOH . I 6 HOH A 40 540 37 HOH HOH . I 6 HOH A 41 541 77 HOH HOH . I 6 HOH A 42 542 94 HOH HOH . I 6 HOH A 43 543 9 HOH HOH . I 6 HOH A 44 544 63 HOH HOH . I 6 HOH A 45 545 47 HOH HOH . I 6 HOH A 46 546 30 HOH HOH . I 6 HOH A 47 547 99 HOH HOH . I 6 HOH A 48 548 139 HOH HOH . I 6 HOH A 49 549 31 HOH HOH . I 6 HOH A 50 550 110 HOH HOH . I 6 HOH A 51 551 133 HOH HOH . I 6 HOH A 52 552 85 HOH HOH . I 6 HOH A 53 553 135 HOH HOH . I 6 HOH A 54 554 48 HOH HOH . I 6 HOH A 55 555 17 HOH HOH . I 6 HOH A 56 556 26 HOH HOH . I 6 HOH A 57 557 83 HOH HOH . I 6 HOH A 58 558 107 HOH HOH . I 6 HOH A 59 559 43 HOH HOH . I 6 HOH A 60 560 60 HOH HOH . I 6 HOH A 61 561 108 HOH HOH . I 6 HOH A 62 562 36 HOH HOH . I 6 HOH A 63 563 39 HOH HOH . I 6 HOH A 64 564 16 HOH HOH . I 6 HOH A 65 565 21 HOH HOH . I 6 HOH A 66 566 124 HOH HOH . I 6 HOH A 67 567 109 HOH HOH . I 6 HOH A 68 568 66 HOH HOH . I 6 HOH A 69 569 44 HOH HOH . I 6 HOH A 70 570 91 HOH HOH . I 6 HOH A 71 571 125 HOH HOH . I 6 HOH A 72 572 25 HOH HOH . I 6 HOH A 73 573 52 HOH HOH . I 6 HOH A 74 574 71 HOH HOH . I 6 HOH A 75 575 68 HOH HOH . I 6 HOH A 76 576 78 HOH HOH . I 6 HOH A 77 577 98 HOH HOH . I 6 HOH A 78 578 10 HOH HOH . I 6 HOH A 79 579 57 HOH HOH . I 6 HOH A 80 580 65 HOH HOH . I 6 HOH A 81 581 8 HOH HOH . I 6 HOH A 82 582 86 HOH HOH . I 6 HOH A 83 583 4 HOH HOH . I 6 HOH A 84 584 45 HOH HOH . I 6 HOH A 85 585 54 HOH HOH . I 6 HOH A 86 586 22 HOH HOH . I 6 HOH A 87 587 12 HOH HOH . I 6 HOH A 88 588 96 HOH HOH . I 6 HOH A 89 589 27 HOH HOH . I 6 HOH A 90 590 49 HOH HOH . I 6 HOH A 91 591 13 HOH HOH . I 6 HOH A 92 592 7 HOH HOH . I 6 HOH A 93 593 14 HOH HOH . I 6 HOH A 94 594 134 HOH HOH . I 6 HOH A 95 595 75 HOH HOH . I 6 HOH A 96 596 1 HOH HOH . I 6 HOH A 97 597 136 HOH HOH . I 6 HOH A 98 598 128 HOH HOH . I 6 HOH A 99 599 51 HOH HOH . I 6 HOH A 100 600 138 HOH HOH . I 6 HOH A 101 601 130 HOH HOH . I 6 HOH A 102 602 55 HOH HOH . I 6 HOH A 103 603 137 HOH HOH . I 6 HOH A 104 604 127 HOH HOH . I 6 HOH A 105 605 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N VAL . . . G 4 35.479 40.714 60.64 1 48.84 ? N VAL 406 A 1 HETATM 2 C CA VAL . . . G 4 36.694 41.476 61.093 1 49.29 ? CA VAL 406 A 1 HETATM 3 C C VAL . . . G 4 37.967 40.673 60.749 1 48 ? C VAL 406 A 1 HETATM 4 O O VAL . . . G 4 39.016 41.332 60.558 1 49.95 ? O VAL 406 A 1 HETATM 5 C CB VAL . . . G 4 36.596 41.9 62.584 1 44.73 ? CB VAL 406 A 1 HETATM 6 C CG1 VAL . . . G 4 36.82 40.764 63.559 1 46.79 ? CG1 VAL 406 A 1 HETATM 7 C CG2 VAL . . . G 4 37.521 43.066 62.928 1 41.43 ? CG2 VAL 406 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #