data_7AKW # _model_server_result.job_id UhOo056_38Zfuvp5scA4EQ _model_server_result.datetime_utc '2024-11-16 17:36:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7akw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7AKW # _exptl.entry_id 7AKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.32 _cell.angle_gamma 90 _cell.entry_id 7AKW _cell.length_a 44.405 _cell.length_b 103.396 _cell.length_c 111.381 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 204 A LYS 204 1_555 D C15 RET . A RET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B NZ LYS 204 B LYS 204 1_555 F C15 RET . B RET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 317 n n C1 C6 RET sing 318 n n C1 C16 RET sing 319 n n C1 C17 RET sing 320 n n C2 C3 RET sing 321 n n C2 H21 RET sing 322 n n C2 H22 RET sing 323 n n C3 C4 RET sing 324 n n C3 H31 RET sing 325 n n C3 H32 RET sing 326 n n C4 C5 RET sing 327 n n C4 H41 RET sing 328 n n C4 H42 RET sing 329 n n C5 C6 RET doub 330 n n C5 C18 RET sing 331 n n C6 C7 RET sing 332 n n C7 C8 RET doub 333 e n C7 H7 RET sing 334 n n C8 C9 RET sing 335 n n C8 H8 RET sing 336 n n C9 C10 RET doub 337 e n C9 C19 RET sing 338 n n C10 C11 RET sing 339 n n C10 H10 RET sing 340 n n C11 C12 RET doub 341 e n C11 H11 RET sing 342 n n C12 C13 RET sing 343 n n C12 H12 RET sing 344 n n C13 C14 RET doub 345 e n C13 C20 RET sing 346 n n C14 C15 RET sing 347 n n C14 H14 RET sing 348 n n C15 O1 RET doub 349 n n C15 H15 RET sing 350 n n C16 H161 RET sing 351 n n C16 H162 RET sing 352 n n C16 H163 RET sing 353 n n C17 H171 RET sing 354 n n C17 H172 RET sing 355 n n C17 H173 RET sing 356 n n C18 H181 RET sing 357 n n C18 H182 RET sing 358 n n C18 H183 RET sing 359 n n C19 H191 RET sing 360 n n C19 H192 RET sing 361 n n C19 H193 RET sing 362 n n C20 H201 RET sing 363 n n C20 H202 RET sing 364 n n C20 H203 RET sing 365 n n # _atom_sites.entry_id 7AKW _atom_sites.fract_transf_matrix[1][1] 0.02252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000126 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LFA A 1 301 301 LFA LFA . D 3 RET A 1 302 204 RET LYR . E 2 LFA B 1 301 301 LFA LFA . F 3 RET B 1 302 204 RET LYR . G 4 HOH A 1 401 48 HOH HOH . G 4 HOH A 2 402 41 HOH HOH . G 4 HOH A 3 403 34 HOH HOH . G 4 HOH A 4 404 2 HOH HOH . G 4 HOH A 5 405 13 HOH HOH . G 4 HOH A 6 406 43 HOH HOH . G 4 HOH A 7 407 4 HOH HOH . G 4 HOH A 8 408 38 HOH HOH . G 4 HOH A 9 409 1 HOH HOH . G 4 HOH A 10 410 32 HOH HOH . G 4 HOH A 11 411 16 HOH HOH . G 4 HOH A 12 412 45 HOH HOH . G 4 HOH A 13 413 42 HOH HOH . G 4 HOH A 14 414 25 HOH HOH . G 4 HOH A 15 415 35 HOH HOH . G 4 HOH A 16 416 9 HOH HOH . G 4 HOH A 17 417 47 HOH HOH . G 4 HOH A 18 418 3 HOH HOH . G 4 HOH A 19 419 11 HOH HOH . G 4 HOH A 20 420 20 HOH HOH . G 4 HOH A 21 421 18 HOH HOH . G 4 HOH A 22 422 50 HOH HOH . G 4 HOH A 23 423 21 HOH HOH . H 4 HOH B 1 401 49 HOH HOH . H 4 HOH B 2 402 8 HOH HOH . H 4 HOH B 3 403 27 HOH HOH . H 4 HOH B 4 404 5 HOH HOH . H 4 HOH B 5 405 15 HOH HOH . H 4 HOH B 6 406 26 HOH HOH . H 4 HOH B 7 407 10 HOH HOH . H 4 HOH B 8 408 40 HOH HOH . H 4 HOH B 9 409 22 HOH HOH . H 4 HOH B 10 410 19 HOH HOH . H 4 HOH B 11 411 44 HOH HOH . H 4 HOH B 12 412 37 HOH HOH . H 4 HOH B 13 413 7 HOH HOH . H 4 HOH B 14 414 14 HOH HOH . H 4 HOH B 15 415 30 HOH HOH . H 4 HOH B 16 416 24 HOH HOH . H 4 HOH B 17 417 51 HOH HOH . H 4 HOH B 18 418 33 HOH HOH . H 4 HOH B 19 419 36 HOH HOH . H 4 HOH B 20 420 23 HOH HOH . H 4 HOH B 21 421 17 HOH HOH . H 4 HOH B 22 422 31 HOH HOH . H 4 HOH B 23 423 46 HOH HOH . H 4 HOH B 24 424 12 HOH HOH . H 4 HOH B 25 425 39 HOH HOH . H 4 HOH B 26 426 6 HOH HOH . H 4 HOH B 27 427 28 HOH HOH . H 4 HOH B 28 428 29 HOH HOH . H 4 HOH B 29 429 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . D 3 10.144 -7.372 21.153 1 33.48 ? C1 RET 302 A 1 HETATM 2 C C2 RET . . . D 3 9.598 -8.421 20.183 1 35.94 ? C2 RET 302 A 1 HETATM 3 C C3 RET . . . D 3 8.11 -8.284 19.914 1 40.32 ? C3 RET 302 A 1 HETATM 4 C C4 RET . . . D 3 7.349 -8.527 21.201 1 35.54 ? C4 RET 302 A 1 HETATM 5 C C5 RET . . . D 3 7.879 -7.604 22.279 1 30.98 ? C5 RET 302 A 1 HETATM 6 C C6 RET . . . D 3 9.137 -7.052 22.283 1 34.72 ? C6 RET 302 A 1 HETATM 7 C C7 RET . . . D 3 9.524 -6.173 23.384 1 34.9 ? C7 RET 302 A 1 HETATM 8 C C8 RET . . . D 3 10.752 -5.58 23.474 1 31.92 ? C8 RET 302 A 1 HETATM 9 C C9 RET . . . D 3 11.063 -4.717 24.596 1 33.62 ? C9 RET 302 A 1 HETATM 10 C C10 RET . . . D 3 12.297 -4.075 24.716 1 32.68 ? C10 RET 302 A 1 HETATM 11 C C11 RET . . . D 3 12.641 -3.219 25.793 1 33.89 ? C11 RET 302 A 1 HETATM 12 C C12 RET . . . D 3 13.816 -2.498 25.586 1 31.93 ? C12 RET 302 A 1 HETATM 13 C C13 RET . . . D 3 14.324 -1.493 26.442 1 32.77 ? C13 RET 302 A 1 HETATM 14 C C14 RET . . . D 3 15.55 -0.871 26.151 1 34.92 ? C14 RET 302 A 1 HETATM 15 C C15 RET . . . D 3 16.179 0.118 26.897 1 38.16 ? C15 RET 302 A 1 HETATM 16 C C16 RET . . . D 3 11.393 -7.964 21.8 1 35.24 ? C16 RET 302 A 1 HETATM 17 C C17 RET . . . D 3 10.484 -6.064 20.429 1 37.47 ? C17 RET 302 A 1 HETATM 18 C C18 RET . . . D 3 6.907 -7.302 23.41 1 32.9 ? C18 RET 302 A 1 HETATM 19 C C19 RET . . . D 3 10.018 -4.477 25.692 1 36.87 ? C19 RET 302 A 1 HETATM 20 C C20 RET . . . D 3 13.548 -1.102 27.703 1 35.3 ? C20 RET 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #